Wall clock time and date at job start Tue Mar 31 2020 16:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.49904 * 2 1 4 4 C 1.38231 * 119.99990 * 119.65619 * 3 2 1 5 5 C 1.38242 * 119.99708 * 179.80798 * 4 3 2 6 6 C 1.38235 * 119.99597 * 0.40414 * 5 4 3 7 7 C 1.38236 * 120.00314 * 359.85373 * 6 5 4 8 8 C 1.38231 * 119.99868 * 359.95486 * 7 6 5 9 9 C 1.53049 * 109.49719 * 120.09455 * 2 1 3 10 10 C 1.53037 * 109.53809 * 58.58693 * 9 2 1 11 11 C 1.52760 * 109.38212 * 61.23822 * 10 9 2 12 12 N 1.46923 * 109.01335 * 305.59174 * 11 10 9 13 13 C 1.34781 * 120.63081 * 233.58744 * 12 11 10 14 14 O 1.21582 * 119.99859 * 184.74045 * 13 12 11 15 15 N 1.34778 * 119.99804 * 4.73849 * 13 12 11 16 16 C 1.46500 * 119.99846 * 174.92738 * 15 13 12 17 17 C 1.52994 * 109.47063 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47207 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47189 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00493 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99780 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00145 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99802 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47105 * 60.00346 * 23 21 19 25 25 H 1.48504 * 109.47157 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47319 * 300.00143 * 23 21 19 27 27 C 1.46924 * 118.73842 * 53.30351 * 12 11 10 28 28 H 1.08999 * 109.46751 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47535 * 300.06319 * 1 2 3 30 30 H 1.08994 * 109.47160 * 60.06698 * 1 2 3 31 31 H 1.07999 * 120.00377 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.99949 * 180.23067 * 5 4 3 33 33 H 1.08001 * 119.99806 * 179.82592 * 6 5 4 34 34 H 1.08003 * 119.99659 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.99861 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.45893 * 178.61109 * 9 2 1 37 37 H 1.09000 * 109.45690 * 298.57761 * 9 2 1 38 38 H 1.08992 * 109.49792 * 181.31719 * 10 9 2 39 39 H 1.08999 * 109.49631 * 301.38575 * 10 9 2 40 40 H 1.09002 * 109.51285 * 185.70677 * 11 10 9 41 41 H 1.09003 * 109.43223 * 65.42883 * 11 10 9 42 42 H 0.97000 * 120.00223 * 354.92380 * 15 13 12 43 43 H 1.09003 * 109.47148 * 59.99891 * 16 15 13 44 44 H 1.09004 * 109.47035 * 299.99653 * 16 15 13 45 45 H 1.09000 * 109.47739 * 299.99973 * 17 16 15 46 46 H 1.09003 * 109.47102 * 60.00016 * 17 16 15 47 47 H 1.09000 * 109.47538 * 300.00508 * 18 17 16 48 48 H 1.09003 * 109.46745 * 60.00204 * 18 17 16 49 49 H 0.97002 * 119.99682 * 179.97438 * 22 21 19 50 50 H 1.08993 * 109.58635 * 66.43610 * 27 12 11 51 51 H 1.09002 * 109.58496 * 186.85864 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4206 0.0000 4 6 2.8221 1.8744 1.0403 5 6 3.2868 3.1764 1.0383 6 6 2.9554 4.0268 0.0001 7 6 2.1619 3.5745 -1.0376 8 6 1.7005 2.2715 -1.0375 9 6 2.0408 -0.7234 1.2483 10 6 1.5030 -2.1561 1.2656 11 6 2.0091 -2.9025 0.0325 12 7 1.6517 -2.1379 -1.1700 13 6 0.9740 -2.7213 -2.1785 14 8 0.7593 -2.1040 -3.2038 15 7 0.5346 -3.9889 -2.0505 16 6 -0.2965 -4.5855 -3.0991 17 6 -0.6560 -6.0208 -2.7101 18 6 -1.5245 -6.6437 -3.8050 19 6 -1.8791 -8.0573 -3.4215 20 1 -1.5213 -8.4701 -2.4899 21 6 -2.6604 -8.8237 -4.2601 22 7 -3.0958 -8.3213 -5.3948 23 14 -3.0994 -10.5762 -3.7851 24 1 -3.8494 -10.5685 -2.5035 25 1 -3.9414 -11.1811 -4.8483 26 1 -1.8560 -11.3723 -3.6263 27 6 2.0414 -0.7235 -1.2497 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5148 0.8894 30 1 -0.3633 0.5128 -0.8905 31 1 3.0784 1.2109 1.8529 32 1 3.9063 3.5299 1.8491 33 1 3.3161 5.0448 -0.0001 34 1 1.9027 4.2392 -1.8484 35 1 1.0802 1.9182 -1.8480 36 1 3.1305 -0.7447 1.2352 37 1 1.6985 -0.1964 2.1389 38 1 1.8480 -2.6633 2.1664 39 1 0.4133 -2.1358 1.2541 40 1 1.5473 -3.8889 -0.0110 41 1 3.0926 -3.0063 0.0909 42 1 0.7685 -4.5063 -1.2640 43 1 0.2542 -4.5915 -4.0398 44 1 -1.2091 -4.0010 -3.2160 45 1 0.2567 -6.6052 -2.5935 46 1 -1.2066 -6.0153 -1.7694 47 1 -2.4372 -6.0593 -3.9213 48 1 -0.9743 -6.6492 -4.7459 49 1 -3.6452 -8.8606 -5.9849 50 1 3.1275 -0.6459 -1.2981 51 1 1.6008 -0.2726 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172148587.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:55 Heat of formation + Delta-G solvation = -18.745889 kcal Electronic energy + Delta-G solvation = -28111.105010 eV Core-core repulsion = 24395.553450 eV Total energy + Delta-G solvation = -3715.551560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01530 -39.58632 -37.78285 -35.39383 -34.43649 -33.18390 -32.34610 -31.20226 -31.04409 -29.69560 -27.49930 -26.74577 -25.42592 -23.89020 -23.08993 -22.46327 -21.75188 -20.61876 -19.96651 -18.76165 -18.22083 -17.07652 -16.48179 -15.99009 -15.90208 -15.43937 -15.21490 -14.82146 -14.61630 -14.50088 -14.27690 -14.22565 -13.89365 -13.65465 -13.58880 -13.20143 -13.16734 -12.74948 -12.43350 -12.25887 -11.98723 -11.79875 -11.70612 -11.54503 -11.43411 -11.38059 -11.23024 -10.87804 -10.80626 -10.65435 -10.61152 -10.53011 -10.00120 -9.84499 -9.42695 -9.18595 -9.13060 -9.08571 -8.85405 -8.42050 -8.35985 -6.00720 -4.03862 1.07279 1.13144 2.70084 3.32358 3.34461 3.37186 3.38971 3.51829 3.96038 4.26210 4.29763 4.45033 4.57225 4.69950 4.71859 4.74382 4.77888 4.87322 4.92981 5.09729 5.17777 5.24948 5.34831 5.35887 5.44369 5.47196 5.53074 5.57641 5.63727 5.65282 5.73999 5.76929 5.80196 5.83003 5.87592 5.88470 6.10224 6.20015 6.21589 6.25152 6.36088 6.43118 6.56486 6.63901 6.73103 6.82610 7.03891 7.05421 7.64714 7.77970 7.98087 8.09661 8.39010 8.75850 9.02562 9.60049 11.10483 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029702 B = 0.001957 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.457730 B =14304.840068 C =14839.828349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 C -0.066 4.066 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.108 4.108 10 C -0.139 4.139 11 C 0.110 3.890 12 N -0.631 5.631 13 C 0.705 3.295 14 O -0.591 6.591 15 N -0.742 5.742 16 C 0.134 3.866 17 C -0.120 4.120 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.146 3.854 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.392 0.608 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.262 0.738 50 H 0.063 0.937 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.067 22.542 17.075 31.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.037 4.037 3 C -0.067 4.067 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.144 4.144 7 C -0.136 4.136 8 C -0.130 4.130 9 C -0.146 4.146 10 C -0.177 4.177 11 C -0.013 4.013 12 N -0.369 5.369 13 C 0.407 3.593 14 O -0.469 6.469 15 N -0.399 5.399 16 C 0.011 3.989 17 C -0.158 4.158 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.022 3.978 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.228 0.772 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.761 22.916 16.116 31.213 hybrid contribution -0.149 -1.205 0.635 1.370 sum 13.613 21.711 16.751 30.615 Atomic orbital electron populations 1.21866 0.92968 1.02523 1.01886 1.19881 0.96610 0.90942 0.96271 1.19714 0.97410 0.94723 0.94839 1.21167 0.98047 0.95969 0.98545 1.21141 1.00132 0.94002 0.98613 1.21152 0.98870 0.99689 0.94713 1.21160 0.97937 0.95883 0.98572 1.21098 0.99915 0.93628 0.98404 1.21653 1.00593 0.95252 0.97090 1.21933 1.02108 0.95915 0.97770 1.21537 1.00255 0.94922 0.84607 1.47205 1.60343 1.11270 1.18062 1.15893 0.78339 0.82010 0.83104 1.90901 1.63246 1.64378 1.28341 1.45570 1.56087 1.12759 1.25464 1.21510 0.93325 0.94590 0.89465 1.21885 1.00527 0.92000 1.01387 1.19021 0.94296 0.95147 0.92867 1.21165 1.31710 0.98005 1.05231 0.92723 1.25032 0.96007 0.98414 0.95025 1.69957 1.35580 1.36966 1.10719 0.86642 0.78408 0.84759 0.78065 1.20271 1.21275 1.20272 1.21434 0.99039 0.79558 0.97736 0.91692 0.92631 0.92342 0.85669 0.86258 0.86332 0.86090 0.85847 0.91387 0.91254 0.90494 0.90783 0.90206 0.91394 0.77160 0.91914 0.92067 0.92811 0.92846 0.96261 0.96232 0.92880 0.91882 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.80 37.16 0.29 -1.01 16 2 C -0.04 -0.31 0.60 -155.54 -0.09 -0.40 16 3 C -0.07 -0.57 4.76 -104.62 -0.50 -1.07 16 4 C -0.12 -0.91 8.98 -39.58 -0.36 -1.27 16 5 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 6 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 7 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 8 C -0.11 -1.01 8.77 -39.59 -0.35 -1.35 16 9 C -0.11 -0.74 3.38 -26.69 -0.09 -0.83 16 10 C -0.14 -0.95 5.72 -26.84 -0.15 -1.11 16 11 C 0.11 0.92 6.40 -3.93 -0.03 0.90 16 12 N -0.63 -7.36 2.42 -178.77 -0.43 -7.79 16 13 C 0.71 11.12 8.30 -86.91 -0.72 10.40 16 14 O -0.59 -11.72 15.78 5.29 0.08 -11.64 16 15 N -0.74 -11.13 5.47 -65.22 -0.36 -11.49 16 16 C 0.13 2.43 5.68 -4.04 -0.02 2.41 16 17 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 18 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 19 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 23 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.15 1.57 4.83 -3.71 -0.02 1.55 16 28 H 0.06 0.70 5.97 -51.93 -0.31 0.39 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.61 7.40 -51.93 -0.38 0.23 16 31 H 0.13 0.76 5.90 -52.49 -0.31 0.45 16 32 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.12 1.11 7.19 -52.48 -0.38 0.73 16 36 H 0.07 0.43 7.62 -51.93 -0.40 0.03 16 37 H 0.07 0.43 7.41 -51.93 -0.38 0.04 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.59 6.33 -51.93 -0.33 0.26 16 40 H 0.08 0.63 5.57 -51.93 -0.29 0.34 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.39 4.80 5.93 -40.82 -0.24 4.55 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.09 1.22 6.50 -51.93 -0.34 0.88 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -33.04 395.44 -11.35 -44.39 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.40 Total: 1.37 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.92 Total: -11.15 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.05 Total: -45.41 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.04 -11.35 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172148587.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.643 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds