Wall clock time and date at job start Tue Mar 31 2020 16:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47032 * 2 1 4 4 C 1.38231 * 119.99922 * 90.00188 * 3 2 1 5 5 C 1.38242 * 119.99768 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99784 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99820 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47060 * 75.25031 * 7 6 5 9 9 C 1.53000 * 109.47070 * 315.25097 * 7 6 5 10 10 C 1.50696 * 109.47024 * 195.24968 * 7 6 5 11 11 O 1.21276 * 119.99931 * 231.99975 * 10 7 6 12 12 N 1.34778 * 119.99879 * 52.00725 * 10 7 6 13 13 C 1.46969 * 120.58965 * 183.93770 * 12 10 7 14 14 C 1.53369 * 108.63554 * 235.24173 * 13 12 10 15 15 N 1.46965 * 108.63414 * 310.58362 * 14 13 12 16 16 C 1.36934 * 120.58777 * 235.19858 * 15 14 13 17 17 H 1.08002 * 119.99829 * 148.15061 * 16 15 14 18 18 C 1.38813 * 120.00165 * 327.87256 * 16 15 14 19 19 N 1.31610 * 120.00230 * 349.95429 * 18 16 15 20 20 Si 1.86803 * 119.99856 * 169.95190 * 18 16 15 21 21 H 1.48502 * 109.47316 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47144 * 120.00105 * 20 18 16 23 23 H 1.48507 * 109.46993 * 240.00110 * 20 18 16 24 24 C 1.46961 * 118.81328 * 55.47684 * 15 14 13 25 25 C 1.46959 * 120.59520 * 3.95656 * 12 10 7 26 26 C 1.38239 * 120.00165 * 0.25514 * 6 5 4 27 27 C 1.38234 * 119.99630 * 270.01593 * 3 2 1 28 28 H 1.08995 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47387 * 300.00736 * 1 2 3 30 30 H 1.09011 * 109.46688 * 60.00285 * 1 2 3 31 31 H 1.08995 * 109.47387 * 239.99264 * 2 1 3 32 32 H 1.08997 * 109.46456 * 119.99827 * 2 1 3 33 33 H 1.08001 * 120.00480 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99730 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47293 * 184.84479 * 8 7 6 36 36 H 1.09004 * 109.47071 * 304.84602 * 8 7 6 37 37 H 1.08995 * 109.46986 * 64.84284 * 8 7 6 38 38 H 1.08999 * 109.47501 * 304.04101 * 9 7 6 39 39 H 1.09007 * 109.47257 * 64.04687 * 9 7 6 40 40 H 1.09005 * 109.47056 * 184.04192 * 9 7 6 41 41 H 1.09006 * 109.60455 * 115.49905 * 13 12 10 42 42 H 1.08998 * 109.61220 * 354.99135 * 13 12 10 43 43 H 1.08993 * 109.61012 * 190.83019 * 14 13 12 44 44 H 1.09003 * 109.74633 * 70.40542 * 14 13 12 45 45 H 0.97006 * 120.00405 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.61185 * 64.26712 * 24 15 14 47 47 H 1.09001 * 109.60729 * 184.77790 * 24 15 14 48 48 H 1.09002 * 109.61110 * 244.49715 * 25 12 10 49 49 H 1.08998 * 109.61218 * 4.84501 * 25 12 10 50 50 H 1.07997 * 119.99388 * 179.72827 * 26 6 5 51 51 H 1.07998 * 120.00078 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9533 4.0275 -0.0001 7 6 3.4546 5.4488 -0.0001 8 6 4.9396 5.4658 0.3677 9 6 2.6661 6.2677 1.0239 10 6 3.2697 6.0465 -1.3711 11 8 4.2046 6.5776 -1.9321 12 7 2.0654 5.9911 -1.9736 13 6 1.8910 6.4924 -3.3441 14 6 0.7662 7.5350 -3.3452 15 7 -0.3961 6.9727 -2.6433 16 6 -1.6198 6.9172 -3.2552 17 1 -2.3035 6.1139 -3.0235 18 6 -1.9840 7.8967 -4.1689 19 7 -1.2470 8.9789 -4.3024 20 14 -3.5201 7.6786 -5.2093 21 1 -4.1674 6.3855 -4.8714 22 1 -4.4646 8.7917 -4.9368 23 1 -3.1491 7.6850 -6.6472 24 6 -0.2228 6.4767 -1.2708 25 6 0.9031 5.4288 -1.2718 26 6 2.7184 3.3775 -1.1973 27 6 2.2624 2.0725 -1.1972 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.0824 1.5635 2.1325 34 1 2.9026 3.8852 2.1324 35 1 5.2812 6.4974 0.4519 36 1 5.0838 4.9564 1.3205 37 1 5.5117 4.9557 -0.4072 38 1 1.6010 6.1966 0.8035 39 1 2.8569 5.8792 2.0244 40 1 2.9787 7.3107 0.9734 41 1 1.6251 5.6668 -4.0044 42 1 2.8176 6.9535 -3.6857 43 1 0.4920 7.7763 -4.3721 44 1 1.1005 8.4379 -2.8341 45 1 -1.5013 9.6632 -4.9412 46 1 0.0445 7.3043 -0.6137 47 1 -1.1505 6.0187 -0.9275 48 1 0.5669 4.5276 -1.7846 49 1 1.1781 5.1848 -0.2457 50 1 2.8942 3.8881 -2.1325 51 1 2.0817 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176680227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:51 Heat of formation + Delta-G solvation = 2.805805 kcal Electronic energy + Delta-G solvation = -30216.159743 eV Core-core repulsion = 26501.542735 eV Total energy + Delta-G solvation = -3714.617008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.23165 -39.97735 -38.56315 -36.87975 -35.60481 -33.99152 -33.09144 -32.16402 -31.59733 -29.60586 -28.83110 -28.21179 -26.02793 -25.09875 -24.53561 -23.77893 -23.05238 -22.00435 -21.22853 -19.88176 -18.74100 -18.13621 -17.15933 -16.99070 -16.77940 -16.19272 -16.09553 -15.81964 -15.43084 -15.29075 -15.25358 -14.92197 -14.76929 -14.49708 -14.43800 -14.17592 -13.99905 -13.69371 -13.44500 -13.33353 -13.07385 -13.03241 -12.95777 -12.71018 -12.65197 -12.41727 -12.34587 -12.24302 -12.10212 -12.05343 -11.98950 -11.85999 -11.66960 -11.61092 -11.49097 -10.68435 -10.62063 -9.82600 -9.73959 -9.33326 -8.62082 -7.88910 -5.44669 0.41727 0.55256 1.45684 1.47647 1.57514 1.57996 2.01743 2.48611 2.84331 3.26936 3.35670 3.55076 3.59069 3.93434 3.98513 4.05270 4.07167 4.18722 4.21198 4.23654 4.37173 4.40555 4.46346 4.55474 4.59164 4.63251 4.66508 4.71143 4.75229 4.76121 4.77949 4.85411 4.89364 4.96253 5.01106 5.09367 5.13999 5.17568 5.19126 5.24136 5.25924 5.30607 5.45092 5.45394 5.57301 5.59800 5.65955 5.69794 5.79571 6.14485 6.35988 6.48919 7.08567 7.13741 7.75774 8.31391 9.15503 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.004205 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.590646 B = 6656.973025 C = 8265.779761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.084 4.084 4 C -0.114 4.114 5 C -0.103 4.103 6 C -0.085 4.085 7 C -0.034 4.034 8 C -0.116 4.116 9 C -0.148 4.148 10 C 0.515 3.485 11 O -0.590 6.590 12 N -0.593 5.593 13 C 0.099 3.901 14 C 0.174 3.826 15 N -0.606 5.606 16 C -0.263 4.263 17 H 0.072 0.928 18 C -0.047 4.047 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.263 1.263 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.126 3.874 25 C 0.099 3.901 26 C -0.123 4.123 27 C -0.124 4.124 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.070 0.930 44 H -0.009 1.009 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.119 0.881 50 H 0.094 0.906 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.204 -17.566 14.867 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.084 4.084 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.086 4.086 7 C -0.037 4.037 8 C -0.173 4.173 9 C -0.204 4.204 10 C 0.305 3.695 11 O -0.471 6.471 12 N -0.324 5.324 13 C -0.026 4.026 14 C 0.047 3.953 15 N -0.330 5.330 16 C -0.393 4.393 17 H 0.090 0.910 18 C -0.242 4.242 19 N -0.583 5.583 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.000 4.000 25 C -0.024 4.024 26 C -0.142 4.142 27 C -0.142 4.142 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.009 0.991 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.136 0.864 50 H 0.113 0.887 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.618 -17.167 14.465 23.707 hybrid contribution -0.743 0.874 -1.539 1.920 sum 6.875 -16.293 12.926 21.905 Atomic orbital electron populations 1.21743 0.94538 1.02257 1.01830 1.20571 0.96210 0.91527 1.03610 1.20154 0.98250 0.97165 0.92838 1.21290 0.99133 0.94510 0.98233 1.21162 0.98725 0.94927 0.97209 1.19436 1.01144 0.93705 0.94276 1.19753 0.99371 0.93038 0.91521 1.21633 0.91004 1.02537 1.02166 1.22194 0.99872 0.99268 0.99116 1.21158 0.81536 0.78495 0.88334 1.90615 1.41667 1.47257 1.67566 1.48066 1.09262 1.59899 1.15154 1.22131 0.99400 0.98014 0.83007 1.20837 0.85299 0.91051 0.98066 1.44166 1.05734 1.72240 1.10833 1.19559 0.93735 1.05180 1.20787 0.91037 1.25971 1.00934 0.94528 1.02789 1.70133 1.41197 1.08937 1.38044 0.85157 0.79238 0.77744 0.77987 1.18695 1.21905 1.21845 1.21596 0.97331 0.94798 0.86268 1.22800 0.85349 0.95968 0.98311 1.21121 1.00212 0.95536 0.97318 1.21059 1.00411 0.94187 0.98590 0.91254 0.92321 0.93871 0.91050 0.89386 0.83304 0.83122 0.92387 0.88728 0.93753 0.91285 0.87455 0.92695 0.91936 0.90911 0.91131 0.99077 0.94016 0.96502 0.90587 0.91913 0.86373 0.88749 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.89 71.98 0.71 -1.30 16 2 C -0.08 -1.10 6.06 29.85 0.18 -0.92 16 3 C -0.08 -1.51 5.13 -19.87 -0.10 -1.61 16 4 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 5 C -0.10 -1.73 9.01 22.27 0.20 -1.53 16 6 C -0.09 -1.96 2.83 -19.86 -0.06 -2.02 16 7 C -0.03 -0.87 0.61 -53.67 -0.03 -0.90 16 8 C -0.12 -2.70 7.74 71.98 0.56 -2.15 16 9 C -0.15 -3.19 7.75 71.98 0.56 -2.63 16 10 C 0.52 18.51 5.22 87.66 0.46 18.97 16 11 O -0.59 -25.44 15.42 -3.02 -0.05 -25.49 16 12 N -0.59 -22.08 1.98 -817.16 -1.62 -23.69 16 13 C 0.10 4.23 6.60 86.41 0.57 4.80 16 14 C 0.17 8.81 5.45 86.41 0.47 9.28 16 15 N -0.61 -30.32 2.95 -697.36 -2.06 -32.37 16 16 C -0.26 -14.12 9.57 84.03 0.80 -13.32 16 17 H 0.07 3.70 7.85 -2.91 -0.02 3.67 16 18 C -0.05 -2.58 5.06 84.86 0.43 -2.15 16 19 N -0.94 -55.50 11.04 21.65 0.24 -55.27 16 20 Si 0.97 44.26 29.57 68.60 2.03 46.29 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 C 0.13 5.07 6.58 86.57 0.57 5.64 16 25 C 0.10 3.29 3.94 86.57 0.34 3.63 16 26 C -0.12 -3.27 6.68 22.27 0.15 -3.12 16 27 C -0.12 -2.82 9.70 22.27 0.22 -2.61 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 32 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.15 1.70 6.81 -2.91 -0.02 1.68 16 35 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 36 H 0.09 1.54 8.01 -2.39 -0.02 1.52 16 37 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 38 H 0.07 1.60 5.12 -2.39 -0.01 1.59 16 39 H 0.11 1.49 6.90 -2.38 -0.02 1.47 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 42 H 0.07 3.18 6.99 -2.39 -0.02 3.17 16 43 H 0.07 3.98 6.05 -2.39 -0.01 3.96 16 44 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.25 14.39 8.31 -92.70 -0.77 13.61 16 46 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16 47 H 0.08 2.86 7.93 -2.39 -0.02 2.84 16 48 H 0.06 2.14 7.43 -2.39 -0.02 2.12 16 49 H 0.12 3.24 2.94 -2.39 -0.01 3.24 16 50 H 0.09 3.03 5.98 -2.91 -0.02 3.02 16 51 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -69.06 385.53 5.70 -63.36 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.91 Total: 20.66 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 6.24 Total: 6.51 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -3.43 Total: -111.33 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.06 5.70 -63.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176680227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.170 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds