Wall clock time and date at job start Tue Mar 31 2020 15:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00159 * 2 1 4 4 N 1.46498 * 109.47855 * 124.99459 * 3 2 1 5 5 C 1.36498 * 124.77728 * 269.70518 * 4 3 2 6 6 C 1.50704 * 125.41777 * 359.95811 * 5 4 3 7 7 C 1.34352 * 109.16224 * 179.81404 * 5 4 3 8 8 C 1.46896 * 106.35671 * 0.42065 * 7 5 4 9 9 C 1.46450 * 127.06405 * 179.71651 * 8 7 5 10 10 O 1.21349 * 120.00334 * 180.02562 * 9 8 7 11 11 C 1.50706 * 119.99999 * 0.02870 * 9 8 7 12 12 N 1.46499 * 109.47308 * 179.97438 * 11 9 8 13 13 C 1.36940 * 120.00063 * 269.99927 * 12 11 9 14 14 H 1.07994 * 119.99872 * 141.96185 * 13 12 11 15 15 C 1.38815 * 119.99609 * 321.96418 * 13 12 11 16 16 N 1.31625 * 119.99298 * 156.37640 * 15 13 12 17 17 Si 1.86793 * 120.00349 * 336.37619 * 15 13 12 18 18 H 1.48494 * 109.47180 * 95.30247 * 17 15 13 19 19 H 1.48500 * 109.47041 * 215.30432 * 17 15 13 20 20 H 1.48507 * 109.47046 * 335.30247 * 17 15 13 21 21 C 1.46498 * 120.00217 * 89.99498 * 12 11 9 22 22 C 1.54260 * 110.03741 * 242.52514 * 21 12 11 23 23 C 1.54964 * 104.16117 * 217.13546 * 22 21 12 24 24 C 1.54887 * 102.77740 * 37.88589 * 23 22 21 25 25 C 1.53870 * 110.03252 * 125.30071 * 21 12 11 26 26 C 1.34489 * 124.77799 * 89.99730 * 4 3 2 27 27 C 1.50701 * 125.91850 * 0.02562 * 26 4 3 28 28 H 1.08000 * 119.99798 * 359.73088 * 1 2 3 29 29 H 1.08001 * 119.99976 * 179.72587 * 1 2 3 30 30 H 1.08000 * 120.00547 * 180.26854 * 2 1 3 31 31 H 1.09001 * 109.47377 * 245.00003 * 3 2 1 32 32 H 1.09009 * 109.47008 * 4.99780 * 3 2 1 33 33 H 1.08997 * 109.47167 * 90.00167 * 6 5 4 34 34 H 1.08996 * 109.46981 * 210.00286 * 6 5 4 35 35 H 1.09003 * 109.46571 * 330.00185 * 6 5 4 36 36 H 1.08001 * 126.82401 * 180.15972 * 7 5 4 37 37 H 1.08995 * 109.46841 * 300.00234 * 11 9 8 38 38 H 1.09003 * 109.46861 * 59.99877 * 11 9 8 39 39 H 0.96997 * 119.99455 * 180.02562 * 16 15 13 40 40 H 1.09001 * 110.01214 * 3.91753 * 21 12 11 41 41 H 1.09002 * 110.48642 * 335.78178 * 22 21 12 42 42 H 1.09003 * 110.48745 * 98.42486 * 22 21 12 43 43 H 1.08999 * 110.72085 * 279.56951 * 23 22 21 44 44 H 1.09002 * 110.92129 * 156.29153 * 23 22 21 45 45 H 1.08997 * 110.48852 * 203.40875 * 24 23 22 46 46 H 1.09006 * 110.60181 * 80.81830 * 24 23 22 47 47 H 1.08998 * 110.04214 * 238.57298 * 25 21 12 48 48 H 1.09003 * 110.03280 * 359.95825 * 25 21 12 49 49 H 1.09000 * 109.46394 * 90.00118 * 27 26 4 50 50 H 1.09002 * 109.47100 * 209.99636 * 27 26 4 51 51 H 1.09001 * 109.47089 * 330.00289 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.6945 1.8109 2.3741 6 6 1.3669 2.3898 2.7907 7 6 3.7708 1.6812 3.1677 8 6 4.8249 1.0799 2.3401 9 6 6.1897 0.7467 2.7538 10 8 6.9607 0.2505 1.9588 11 6 6.6366 1.0198 4.1669 12 7 8.0310 0.6003 4.3278 13 6 8.3199 -0.6774 4.7269 14 1 9.1664 -1.1971 4.3030 15 6 7.5247 -1.3045 5.6762 16 7 7.4805 -2.6188 5.7331 17 14 6.5175 -0.2834 6.8729 18 1 5.1376 -0.1240 6.3481 19 1 6.4703 -0.9679 8.1899 20 1 7.1441 1.0535 7.0321 21 6 9.1163 1.5477 4.0618 22 6 9.9850 1.0413 2.8920 23 6 11.4282 1.4410 3.2907 24 6 11.4413 1.1963 4.8200 25 6 10.0417 1.6467 5.2872 26 6 4.2645 0.8937 1.0904 27 6 4.9573 0.3023 -0.1102 28 1 -0.5400 0.9353 0.0044 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8501 -0.9352 -0.0044 31 1 2.6213 1.4026 -0.9314 32 1 1.3585 2.1317 0.0895 33 1 0.7281 1.5944 3.1747 34 1 1.5243 3.1369 3.5686 35 1 0.8881 2.8568 1.9300 36 1 3.8473 1.9666 4.2065 37 1 6.5512 2.0862 4.3752 38 1 6.0075 0.4625 4.8610 39 1 6.9245 -3.0571 6.3962 40 1 8.7052 2.5288 3.8242 41 1 9.9020 -0.0413 2.7959 42 1 9.6958 1.5310 1.9621 43 1 11.6134 2.4913 3.0659 44 1 12.1599 0.8058 2.7916 45 1 12.2146 1.7990 5.2962 46 1 11.5944 0.1393 5.0381 47 1 10.0804 2.6760 5.6438 48 1 9.6828 0.9905 6.0801 49 1 5.4387 1.0972 -0.6798 50 1 5.7093 -0.4142 0.2206 51 1 4.2252 -0.2036 -0.7395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177647609.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:31 Heat of formation + Delta-G solvation = 49.002099 kcal Electronic energy + Delta-G solvation = -29327.802067 eV Core-core repulsion = 25615.188281 eV Total energy + Delta-G solvation = -3712.613787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24457 -38.34784 -37.18818 -35.29052 -34.02541 -32.55946 -31.46513 -31.22975 -29.14740 -28.13603 -27.76317 -26.60799 -25.65340 -24.51739 -22.64994 -21.36549 -20.44788 -19.93380 -19.35348 -18.79693 -17.89483 -16.58947 -16.08232 -15.77871 -15.32403 -15.27921 -15.07372 -14.61201 -14.08813 -13.89954 -13.73807 -13.45766 -13.38926 -13.22588 -13.02178 -12.72138 -12.57636 -12.45581 -12.34063 -12.21303 -12.13203 -12.04364 -11.87101 -11.34450 -11.18342 -11.11509 -10.93543 -10.63432 -10.35520 -10.30707 -10.20532 -9.95233 -9.94255 -9.82818 -9.61876 -9.36496 -8.74039 -8.34031 -8.31680 -7.69857 -6.63007 -5.87929 -3.25981 1.69418 2.02128 2.56400 3.01253 3.35898 3.52115 3.57166 3.97171 4.38059 4.50893 4.61042 4.73586 4.81669 4.94509 4.99324 5.07319 5.20294 5.28826 5.38085 5.41158 5.44481 5.51294 5.51790 5.60360 5.73180 5.76130 5.76269 5.86573 6.10727 6.14410 6.15143 6.16944 6.22995 6.24423 6.31046 6.33495 6.37443 6.45450 6.53411 6.59510 6.65364 6.71170 6.78228 6.92044 7.09430 7.10946 7.29353 7.35012 7.37242 7.43040 8.16823 8.56671 8.73452 9.14392 9.84362 10.25325 11.28140 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.003749 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.452676 B = 7466.894738 C = 8309.674663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.175 4.175 3 C 0.127 3.873 4 N -0.436 5.436 5 C -0.001 4.001 6 C -0.079 4.079 7 C -0.153 4.153 8 C -0.247 4.247 9 C 0.396 3.604 10 O -0.449 6.449 11 C 0.100 3.900 12 N -0.583 5.583 13 C -0.245 4.245 14 H 0.080 0.920 15 C 0.034 3.966 16 N -0.898 5.898 17 Si 0.860 3.140 18 H -0.284 1.284 19 H -0.301 1.301 20 H -0.265 1.265 21 C 0.177 3.823 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.133 4.133 26 C 0.090 3.910 27 C -0.090 4.090 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.143 0.857 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.261 0.739 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.102 0.898 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.533 11.239 -10.260 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.006 3.994 4 N -0.113 5.113 5 C -0.108 4.108 6 C -0.136 4.136 7 C -0.176 4.176 8 C -0.255 4.255 9 C 0.271 3.729 10 O -0.323 6.323 11 C -0.027 4.027 12 N -0.303 5.303 13 C -0.374 4.374 14 H 0.097 0.903 15 C -0.166 4.166 16 N -0.540 5.540 17 Si 0.689 3.311 18 H -0.212 1.212 19 H -0.229 1.229 20 H -0.190 1.190 21 C 0.070 3.930 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.154 4.154 25 C -0.172 4.172 26 C -0.025 4.025 27 C -0.148 4.148 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.161 0.839 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.120 0.880 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.390 10.839 -10.809 19.080 hybrid contribution -0.984 0.360 0.824 1.334 sum -12.374 11.200 -9.985 19.449 Atomic orbital electron populations 1.23902 0.95525 1.02347 0.98862 1.23214 0.96386 0.98511 1.01260 1.20918 0.92477 0.96777 0.89265 1.43468 1.09848 1.48424 1.09596 1.20052 0.97945 1.07846 0.84970 1.20272 0.91758 1.00355 1.01238 1.21854 0.91985 1.04978 0.98814 1.21624 0.97814 1.12807 0.93290 1.22962 0.84122 0.74194 0.91616 1.90397 1.54917 1.32673 1.54340 1.21563 0.88560 0.98877 0.93700 1.43980 0.98257 1.10624 1.77456 1.18609 1.14648 0.87596 1.16523 0.90266 1.25465 0.98298 0.95038 0.97803 1.69906 1.40723 1.07754 1.35588 0.87154 0.80023 0.81818 0.82072 1.21215 1.22915 1.18969 1.21019 0.88443 0.91041 0.92481 1.22749 0.93150 1.02816 0.97854 1.22465 0.97878 0.99571 0.96327 1.22234 0.96804 1.01055 0.95294 1.22531 0.94899 0.99449 1.00303 1.20855 0.83937 1.00511 0.97179 1.20521 1.00043 1.01239 0.92953 0.88307 0.87774 0.86555 0.88509 0.88933 0.91364 0.90305 0.92362 0.83943 0.91474 0.90016 0.92951 0.93415 0.90162 0.93419 0.92885 0.92814 0.93411 0.91623 0.93838 0.90069 0.90919 0.87990 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 14.32 29.02 0.42 -0.80 16 2 C -0.17 -1.57 9.85 -36.02 -0.35 -1.93 16 3 C 0.13 1.16 5.80 -5.19 -0.03 1.13 16 4 N -0.44 -5.80 2.66 -108.89 -0.29 -6.09 16 5 C 0.00 -0.02 6.84 -81.89 -0.56 -0.58 16 6 C -0.08 -0.76 10.05 36.01 0.36 -0.40 16 7 C -0.15 -2.52 10.58 -37.45 -0.40 -2.91 16 8 C -0.25 -4.67 6.29 -103.10 -0.65 -5.32 16 9 C 0.40 8.73 7.19 -31.00 -0.22 8.51 16 10 O -0.45 -10.79 14.97 5.50 0.08 -10.71 16 11 C 0.10 2.26 4.55 -5.19 -0.02 2.23 16 12 N -0.58 -14.14 1.51 -165.76 -0.25 -14.39 16 13 C -0.25 -6.88 8.20 -15.06 -0.12 -7.00 16 14 H 0.08 2.45 7.09 -52.49 -0.37 2.08 16 15 C 0.03 0.98 5.28 -17.43 -0.09 0.88 16 16 N -0.90 -27.86 13.97 55.49 0.78 -27.08 16 17 Si 0.86 21.88 25.17 -169.99 -4.28 17.60 16 18 H -0.28 -7.01 6.65 56.52 0.38 -6.63 16 19 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.18 3.72 3.42 -66.82 -0.23 3.49 16 22 C -0.13 -2.55 6.43 -25.03 -0.16 -2.71 16 23 C -0.12 -2.10 6.91 -24.70 -0.17 -2.28 16 24 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 25 C -0.13 -2.62 6.24 -25.61 -0.16 -2.78 16 26 C 0.09 1.46 6.94 -81.44 -0.56 0.89 16 27 C -0.09 -1.28 9.28 36.01 0.33 -0.94 16 28 H 0.10 0.56 7.84 -52.49 -0.41 0.15 16 29 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.10 0.76 7.49 -51.93 -0.39 0.38 16 32 H 0.09 0.67 6.52 -51.92 -0.34 0.33 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.45 6.92 -51.93 -0.36 0.09 16 36 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 38 H 0.08 1.99 3.43 -51.93 -0.18 1.81 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.05 0.93 7.81 -51.93 -0.41 0.53 16 41 H 0.08 1.88 6.64 -51.93 -0.34 1.54 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 1.83 7.17 -51.93 -0.37 1.46 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.10 1.74 6.52 -51.93 -0.34 1.40 16 51 H 0.06 0.66 7.58 -51.93 -0.39 0.26 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -33.42 402.79 -9.23 -42.65 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.55 Total: 4.68 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.80 Total: -12.72 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.23 Total: -47.56 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.28 Total: 17.60 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.42 -9.23 -42.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177647609.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.653 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds