Wall clock time and date at job start Tue Mar 31 2020 15:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99998 * 2 1 4 4 N 1.46498 * 109.47294 * 125.00617 * 3 2 1 5 5 C 1.36489 * 124.78408 * 90.02017 * 4 3 2 6 6 C 1.50708 * 125.41170 * 359.97076 * 5 4 3 7 7 C 1.34345 * 109.16882 * 180.02562 * 5 4 3 8 8 C 1.46904 * 106.35460 * 0.02562 * 7 5 4 9 9 C 1.46453 * 127.05976 * 180.02562 * 8 7 5 10 10 O 1.21347 * 119.99842 * 180.02562 * 9 8 7 11 11 C 1.50699 * 120.00231 * 0.02562 * 9 8 7 12 12 N 1.46900 * 109.47122 * 180.02562 * 11 9 8 13 13 C 1.46904 * 110.99791 * 190.00353 * 12 11 9 14 14 C 1.50698 * 109.47512 * 75.51624 * 13 12 11 15 15 H 1.07997 * 119.99626 * 355.06418 * 14 13 12 16 16 C 1.37878 * 119.99858 * 175.07083 * 14 13 12 17 17 N 1.31518 * 120.00096 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99685 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47378 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47198 * 120.00103 * 18 16 14 21 21 H 1.48505 * 109.47372 * 239.99975 * 18 16 14 22 22 C 1.46900 * 111.00105 * 66.04614 * 12 11 9 23 23 C 1.52996 * 109.46840 * 199.83716 * 22 12 11 24 24 C 1.53009 * 117.49713 * 243.48620 * 23 22 12 25 25 C 1.53004 * 59.99990 * 252.51132 * 24 23 22 26 26 C 1.34495 * 124.77087 * 270.33943 * 4 3 2 27 27 C 1.50703 * 125.92595 * 0.03701 * 26 4 3 28 28 H 1.07994 * 120.00076 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99709 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00176 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47352 * 5.00220 * 3 2 1 32 32 H 1.09006 * 109.47391 * 245.00338 * 3 2 1 33 33 H 1.08999 * 109.46655 * 270.00992 * 6 5 4 34 34 H 1.08990 * 109.47314 * 30.00890 * 6 5 4 35 35 H 1.08996 * 109.47114 * 150.01178 * 6 5 4 36 36 H 1.08002 * 126.82503 * 180.02562 * 7 5 4 37 37 H 1.09002 * 109.46924 * 59.99842 * 11 9 8 38 38 H 1.08997 * 109.46963 * 300.00060 * 11 9 8 39 39 H 1.09007 * 109.46816 * 315.51198 * 13 12 11 40 40 H 1.09006 * 109.47052 * 195.51810 * 13 12 11 41 41 H 0.96994 * 119.99724 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.47080 * 319.83462 * 22 12 11 43 43 H 1.08996 * 109.47119 * 79.83649 * 22 12 11 44 44 H 1.08997 * 115.55438 * 29.19376 * 23 22 12 45 45 H 1.09003 * 117.49618 * 0.02562 * 24 23 22 46 46 H 1.08998 * 117.49931 * 145.02118 * 24 23 22 47 47 H 1.08992 * 117.49880 * 252.50938 * 25 24 23 48 48 H 1.09004 * 117.49467 * 107.48550 * 25 24 23 49 49 H 1.09007 * 109.46788 * 270.18005 * 27 26 4 50 50 H 1.08997 * 109.46722 * 30.17643 * 27 26 4 51 51 H 1.08994 * 109.46822 * 150.18004 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.2836 0.8874 1.0894 6 6 4.9652 0.2972 -0.1183 7 6 4.8486 1.0585 2.2962 8 6 3.8182 1.6590 3.1540 9 6 3.9521 2.0352 4.5630 10 8 3.0111 2.5251 5.1522 11 6 5.2583 1.8140 5.2812 12 7 5.1355 2.2697 6.6723 13 6 6.4457 2.2920 7.3365 14 6 7.2327 3.4837 6.8553 15 1 6.8362 4.1117 6.0713 16 6 8.4589 3.7720 7.4159 17 7 8.9415 3.0073 8.3709 18 14 9.4347 5.2487 6.8189 19 1 8.6776 5.9413 5.7455 20 1 9.6576 6.1849 7.9499 21 1 10.7447 4.7943 6.2871 22 6 4.1818 1.4368 7.4170 23 6 3.7035 2.1941 8.6574 24 6 4.0477 1.5996 10.0245 25 6 2.6097 1.5417 9.5053 26 6 2.6953 1.7924 2.3592 27 6 1.3672 2.3573 2.7929 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 4.8153 -0.7824 -0.1285 34 1 4.5408 0.7315 -1.0234 35 1 6.0322 0.5156 -0.0762 36 1 5.8595 0.8049 2.5796 37 1 6.0471 2.3769 4.7823 38 1 5.5051 0.7524 5.2675 39 1 6.9891 1.3775 7.0987 40 1 6.3050 2.3610 8.4152 41 1 9.8040 3.2104 8.7655 42 1 3.3276 1.2053 6.7808 43 1 4.6691 0.5108 7.7221 44 1 3.6912 3.2805 8.5693 45 1 4.6153 0.6691 10.0402 46 1 4.2622 2.2948 10.8361 47 1 1.8781 2.1989 9.9753 48 1 2.2309 0.5730 9.1793 49 1 1.3552 3.4331 2.6172 50 1 0.5679 1.8867 2.2205 51 1 1.2181 2.1609 3.8546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177653173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:28 Heat of formation + Delta-G solvation = 58.977632 kcal Electronic energy + Delta-G solvation = -28413.057976 eV Core-core repulsion = 24700.876761 eV Total energy + Delta-G solvation = -3712.181215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.43848 -38.71931 -37.07867 -35.45729 -34.96110 -32.69665 -32.34703 -31.59049 -29.32100 -28.29608 -27.48597 -26.09978 -24.78342 -23.85565 -21.96877 -21.70073 -20.95581 -20.60037 -19.57922 -19.00563 -18.12065 -16.57434 -16.28700 -15.99459 -15.59117 -15.16209 -14.66033 -14.59741 -14.31453 -14.14793 -13.99686 -13.65359 -13.55721 -13.39875 -13.23313 -13.07382 -12.66488 -12.51179 -12.40941 -12.25548 -12.22865 -12.08239 -11.76490 -11.49693 -11.31375 -11.15733 -11.11487 -10.97980 -10.64163 -10.59347 -10.55442 -10.06837 -9.89978 -9.69146 -9.28202 -9.11047 -8.71200 -8.52474 -8.31826 -7.89100 -7.09696 -5.92763 -3.93077 1.56486 1.75292 2.38742 2.84757 3.36993 3.44455 3.50392 3.65288 4.26236 4.37704 4.40001 4.51282 4.58433 4.68374 4.76475 4.83875 4.97833 5.07649 5.09499 5.23241 5.35078 5.39406 5.42046 5.46236 5.53981 5.57420 5.67458 5.71546 5.77815 5.88475 5.97556 6.02569 6.04515 6.06800 6.10353 6.12140 6.15409 6.37706 6.38932 6.42197 6.49155 6.54992 6.63777 6.91856 6.99816 7.15666 7.24896 7.37227 7.46986 7.93412 8.19288 8.29690 8.43454 8.67801 9.15231 9.70525 11.17745 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.003314 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.125356 B = 8446.460518 C =10355.849208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.126 3.874 4 N -0.434 5.434 5 C -0.002 4.002 6 C -0.081 4.081 7 C -0.146 4.146 8 C -0.253 4.253 9 C 0.423 3.577 10 O -0.457 6.457 11 C 0.028 3.972 12 N -0.521 5.521 13 C 0.193 3.807 14 C -0.500 4.500 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.088 3.912 23 C -0.118 4.118 24 C -0.182 4.182 25 C -0.190 4.190 26 C 0.100 3.900 27 C -0.092 4.092 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.112 0.888 38 H 0.049 0.951 39 H -0.013 1.013 40 H 0.041 0.959 41 H 0.259 0.741 42 H 0.070 0.930 43 H 0.019 0.981 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.059 0.941 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 -7.619 -17.424 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.005 3.995 4 N -0.111 5.111 5 C -0.109 4.109 6 C -0.138 4.138 7 C -0.170 4.170 8 C -0.261 4.261 9 C 0.302 3.698 10 O -0.333 6.333 11 C -0.101 4.101 12 N -0.246 5.246 13 C 0.068 3.932 14 C -0.539 4.539 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.041 4.041 23 C -0.136 4.136 24 C -0.219 4.219 25 C -0.227 4.227 26 C -0.016 4.016 27 C -0.149 4.149 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.166 0.834 37 H 0.129 0.871 38 H 0.067 0.933 39 H 0.005 0.995 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.129 0.871 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.028 -6.906 -17.290 24.567 hybrid contribution 1.163 -0.165 -0.313 1.216 sum -14.865 -7.070 -17.603 24.100 Atomic orbital electron populations 1.23957 0.95593 1.02552 0.98292 1.23159 0.96327 0.98334 1.01805 1.20947 0.92429 0.96917 0.89252 1.43494 1.10198 1.48412 1.09045 1.20128 0.84718 1.08009 0.98020 1.20301 1.00458 1.00078 0.93005 1.21915 0.99237 1.04131 0.91696 1.21228 0.94434 1.14106 0.96359 1.21661 0.89222 0.73746 0.85205 1.90434 1.40735 1.33779 1.68331 1.22189 0.96437 0.99355 0.92157 1.61873 1.12507 1.50608 0.99577 1.19804 0.82562 0.95720 0.95132 1.21233 1.01716 1.11064 1.19912 0.91944 1.24966 0.97684 0.96762 0.95191 1.69973 1.19133 1.38595 1.26250 0.86504 0.79750 0.82852 0.78698 1.19666 1.21137 1.21224 1.21617 0.95837 0.92753 0.93855 1.22176 1.00406 1.00244 0.90799 1.22971 0.97447 1.02877 0.98642 1.22899 0.92035 1.02140 1.05663 1.20800 0.96972 0.99882 0.83922 1.20540 0.89999 1.00443 1.03936 0.88128 0.87703 0.86645 0.88830 0.88337 0.91353 0.92168 0.90025 0.83398 0.87055 0.93312 0.99525 0.94091 0.93144 0.91192 0.96326 0.87127 0.89386 0.89328 0.89507 0.89705 0.90608 0.92224 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 14.32 29.01 0.42 -0.54 16 2 C -0.18 -1.22 9.85 -36.03 -0.35 -1.57 16 3 C 0.13 0.93 5.79 -5.20 -0.03 0.90 16 4 N -0.43 -4.85 2.66 -108.89 -0.29 -5.14 16 5 C 0.00 -0.03 6.84 -81.89 -0.56 -0.59 16 6 C -0.08 -0.64 10.05 36.01 0.36 -0.28 16 7 C -0.15 -2.05 10.58 -37.45 -0.40 -2.44 16 8 C -0.25 -4.06 6.29 -103.09 -0.65 -4.71 16 9 C 0.42 7.93 6.63 -31.00 -0.21 7.72 16 10 O -0.46 -9.31 13.08 5.50 0.07 -9.24 16 11 C 0.03 0.56 4.83 -4.98 -0.02 0.53 16 12 N -0.52 -12.00 4.09 -237.51 -0.97 -12.97 16 13 C 0.19 5.13 4.57 -4.97 -0.02 5.11 16 14 C -0.50 -14.33 8.61 -34.44 -0.30 -14.63 16 15 H 0.06 1.80 7.64 -52.49 -0.40 1.40 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.09 1.80 4.75 -3.83 -0.02 1.78 16 23 C -0.12 -2.29 5.17 -90.61 -0.47 -2.76 16 24 C -0.18 -3.21 10.10 -26.72 -0.27 -3.48 16 25 C -0.19 -3.02 10.25 -26.73 -0.27 -3.29 16 26 C 0.10 1.37 6.94 -81.43 -0.56 0.80 16 27 C -0.09 -1.08 9.28 36.01 0.33 -0.74 16 28 H 0.10 0.48 7.84 -52.49 -0.41 0.07 16 29 H 0.10 0.51 8.06 -52.48 -0.42 0.09 16 30 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.09 0.60 7.16 -51.93 -0.37 0.23 16 32 H 0.10 0.57 6.88 -51.93 -0.36 0.21 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.38 6.92 -51.93 -0.36 0.02 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.11 2.35 7.30 -51.93 -0.38 1.98 16 38 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 39 H -0.01 -0.36 8.00 -51.93 -0.42 -0.78 16 40 H 0.04 1.17 7.25 -51.93 -0.38 0.80 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.07 1.40 5.85 -51.93 -0.30 1.09 16 43 H 0.02 0.38 7.73 -51.93 -0.40 -0.02 16 44 H 0.11 2.35 8.14 -51.93 -0.42 1.93 16 45 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 46 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 51 H 0.10 1.36 6.53 -51.93 -0.34 1.03 16 LS Contribution 416.60 15.07 6.28 6.28 Total: -1.00 -33.26 416.60 -11.03 -44.28 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.71 Total: 2.76 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -3.12 Total: -16.70 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.53 Total: -44.42 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.26 -11.03 -44.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177653173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.261 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds