Wall clock time and date at job start Tue Mar 31 2020 15:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99998 * 2 1 4 4 N 1.46498 * 109.47294 * 125.00617 * 3 2 1 5 5 C 1.36489 * 124.78408 * 90.02017 * 4 3 2 6 6 C 1.50708 * 125.41170 * 359.97076 * 5 4 3 7 7 C 1.34345 * 109.16882 * 180.02562 * 5 4 3 8 8 C 1.46904 * 106.35460 * 0.02562 * 7 5 4 9 9 C 1.46453 * 127.05976 * 180.02562 * 8 7 5 10 10 O 1.21347 * 119.99842 * 180.02562 * 9 8 7 11 11 C 1.50699 * 120.00231 * 0.02562 * 9 8 7 12 12 N 1.46900 * 109.47122 * 180.02562 * 11 9 8 13 13 C 1.46904 * 110.99791 * 190.00353 * 12 11 9 14 14 C 1.50698 * 109.47512 * 75.51624 * 13 12 11 15 15 H 1.07997 * 119.99626 * 355.06418 * 14 13 12 16 16 C 1.37878 * 119.99858 * 175.07083 * 14 13 12 17 17 N 1.31518 * 120.00096 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99685 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47378 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47198 * 120.00103 * 18 16 14 21 21 H 1.48505 * 109.47372 * 239.99975 * 18 16 14 22 22 C 1.46900 * 111.00105 * 66.04614 * 12 11 9 23 23 C 1.52996 * 109.46840 * 199.83716 * 22 12 11 24 24 C 1.53009 * 117.49713 * 243.48620 * 23 22 12 25 25 C 1.53004 * 59.99990 * 252.51132 * 24 23 22 26 26 C 1.34495 * 124.77087 * 270.33943 * 4 3 2 27 27 C 1.50703 * 125.92595 * 0.03701 * 26 4 3 28 28 H 1.07994 * 120.00076 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99709 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00176 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47352 * 5.00220 * 3 2 1 32 32 H 1.09006 * 109.47391 * 245.00338 * 3 2 1 33 33 H 1.08999 * 109.46655 * 270.00992 * 6 5 4 34 34 H 1.08990 * 109.47314 * 30.00890 * 6 5 4 35 35 H 1.08996 * 109.47114 * 150.01178 * 6 5 4 36 36 H 1.08002 * 126.82503 * 180.02562 * 7 5 4 37 37 H 1.09002 * 109.46924 * 59.99842 * 11 9 8 38 38 H 1.08997 * 109.46963 * 300.00060 * 11 9 8 39 39 H 1.09007 * 109.46816 * 315.51198 * 13 12 11 40 40 H 1.09006 * 109.47052 * 195.51810 * 13 12 11 41 41 H 0.96994 * 119.99724 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.47080 * 319.83462 * 22 12 11 43 43 H 1.08996 * 109.47119 * 79.83649 * 22 12 11 44 44 H 1.08997 * 115.55438 * 29.19376 * 23 22 12 45 45 H 1.09003 * 117.49618 * 0.02562 * 24 23 22 46 46 H 1.08998 * 117.49931 * 145.02118 * 24 23 22 47 47 H 1.08992 * 117.49880 * 252.50938 * 25 24 23 48 48 H 1.09004 * 117.49467 * 107.48550 * 25 24 23 49 49 H 1.09007 * 109.46788 * 270.18005 * 27 26 4 50 50 H 1.08997 * 109.46722 * 30.17643 * 27 26 4 51 51 H 1.08994 * 109.46822 * 150.18004 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.2836 0.8874 1.0894 6 6 4.9652 0.2972 -0.1183 7 6 4.8486 1.0585 2.2962 8 6 3.8182 1.6590 3.1540 9 6 3.9521 2.0352 4.5630 10 8 3.0111 2.5251 5.1522 11 6 5.2583 1.8140 5.2812 12 7 5.1355 2.2697 6.6723 13 6 6.4457 2.2920 7.3365 14 6 7.2327 3.4837 6.8553 15 1 6.8362 4.1117 6.0713 16 6 8.4589 3.7720 7.4159 17 7 8.9415 3.0073 8.3709 18 14 9.4347 5.2487 6.8189 19 1 8.6776 5.9413 5.7455 20 1 9.6576 6.1849 7.9499 21 1 10.7447 4.7943 6.2871 22 6 4.1818 1.4368 7.4170 23 6 3.7035 2.1941 8.6574 24 6 4.0477 1.5996 10.0245 25 6 2.6097 1.5417 9.5053 26 6 2.6953 1.7924 2.3592 27 6 1.3672 2.3573 2.7929 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 4.8153 -0.7824 -0.1285 34 1 4.5408 0.7315 -1.0234 35 1 6.0322 0.5156 -0.0762 36 1 5.8595 0.8049 2.5796 37 1 6.0471 2.3769 4.7823 38 1 5.5051 0.7524 5.2675 39 1 6.9891 1.3775 7.0987 40 1 6.3050 2.3610 8.4152 41 1 9.8040 3.2104 8.7655 42 1 3.3276 1.2053 6.7808 43 1 4.6691 0.5108 7.7221 44 1 3.6912 3.2805 8.5693 45 1 4.6153 0.6691 10.0402 46 1 4.2622 2.2948 10.8361 47 1 1.8781 2.1989 9.9753 48 1 2.2309 0.5730 9.1793 49 1 1.3552 3.4331 2.6172 50 1 0.5679 1.8867 2.2205 51 1 1.2181 2.1609 3.8546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177653173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:27 Heat of formation + Delta-G solvation = 41.667741 kcal Electronic energy + Delta-G solvation = -28413.808589 eV Core-core repulsion = 24700.876761 eV Total energy + Delta-G solvation = -3712.931828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.41087 -40.25602 -38.60356 -36.70303 -36.06748 -34.54763 -33.57530 -32.48031 -30.29849 -29.71286 -29.39886 -27.10471 -25.98780 -25.49761 -23.39884 -23.13955 -22.25734 -21.39527 -21.11706 -20.10897 -19.27374 -18.49328 -17.60468 -17.05034 -16.78163 -16.53661 -16.30375 -16.11436 -15.57785 -15.40289 -15.09230 -14.98079 -14.77387 -14.49135 -14.24556 -14.19099 -14.06787 -13.94950 -13.52114 -13.39354 -13.19374 -13.04057 -12.98450 -12.87396 -12.84785 -12.62742 -12.51289 -12.34161 -12.30793 -12.24431 -12.04777 -11.95214 -11.40201 -11.06857 -10.75603 -10.60127 -10.53751 -10.22541 -9.55579 -8.98748 -8.89665 -8.16397 -6.25927 0.48344 1.07423 1.40290 1.40520 1.41707 1.55485 2.04996 2.34383 2.42210 2.92666 3.10943 3.18524 3.52437 3.76413 3.82822 3.87401 3.94473 3.99205 4.07606 4.16870 4.22625 4.23691 4.43249 4.46140 4.51217 4.56146 4.64645 4.67179 4.69140 4.74749 4.77108 4.77385 4.82074 4.87136 4.92605 5.00228 5.03980 5.05698 5.14454 5.19350 5.26188 5.29506 5.36842 5.43050 5.58187 5.64389 5.69838 5.85508 6.10974 6.15671 6.34068 6.40023 6.62995 6.88624 6.94887 7.42857 8.94202 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.003314 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.125356 B = 8446.460518 C =10355.849208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.193 4.193 3 C 0.119 3.881 4 N -0.426 5.426 5 C 0.012 3.988 6 C -0.080 4.080 7 C -0.177 4.177 8 C -0.294 4.294 9 C 0.428 3.572 10 O -0.482 6.482 11 C 0.029 3.971 12 N -0.533 5.533 13 C 0.213 3.787 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.274 1.274 22 C 0.096 3.904 23 C -0.150 4.150 24 C -0.186 4.186 25 C -0.152 4.152 26 C 0.106 3.894 27 C -0.088 4.088 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.055 0.945 39 H -0.038 1.038 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.075 0.925 43 H 0.014 0.986 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.951 -7.646 -19.968 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.212 4.212 3 C 0.000 4.000 4 N -0.102 5.102 5 C -0.095 4.095 6 C -0.137 4.137 7 C -0.200 4.200 8 C -0.302 4.302 9 C 0.309 3.691 10 O -0.361 6.361 11 C -0.100 4.100 12 N -0.257 5.257 13 C 0.087 3.913 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.193 4.193 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.200 1.200 22 C -0.032 4.032 23 C -0.169 4.169 24 C -0.223 4.223 25 C -0.189 4.189 26 C -0.013 4.013 27 C -0.145 4.145 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.163 0.837 37 H 0.114 0.886 38 H 0.073 0.927 39 H -0.020 1.020 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.033 0.967 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.127 0.873 48 H 0.120 0.880 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.643 -6.952 -19.869 27.466 hybrid contribution 1.586 -0.223 0.388 1.648 sum -16.057 -7.175 -19.480 26.245 Atomic orbital electron populations 1.24176 0.95312 1.03615 0.96246 1.23083 0.96697 0.97783 1.03626 1.21307 0.92389 0.97880 0.88439 1.43788 1.10624 1.46643 1.09152 1.20638 0.84727 1.05886 0.98259 1.20432 1.00447 1.00788 0.92014 1.22021 0.99307 1.05859 0.92801 1.21044 0.96728 1.17111 0.95320 1.21540 0.87818 0.73270 0.86497 1.90409 1.41027 1.35457 1.69208 1.22179 0.97699 0.99341 0.90782 1.61818 1.10927 1.52100 1.00879 1.19401 0.84020 0.94086 0.93785 1.21447 1.02538 1.11640 1.20054 0.92695 1.25839 0.98600 0.99749 0.95131 1.70090 1.19705 1.40282 1.27190 0.85394 0.78303 0.78971 0.78308 1.19171 1.20478 1.19967 1.21585 0.95112 0.92302 0.94239 1.22071 1.04469 0.99005 0.91363 1.23002 0.99344 1.02574 0.97418 1.22996 0.91104 1.02604 1.02239 1.20993 0.96806 0.98866 0.84592 1.20533 0.89997 1.01002 1.03005 0.86841 0.86949 0.87139 0.87386 0.86205 0.89970 0.89878 0.89587 0.83715 0.88646 0.92676 1.02020 0.96668 0.92730 0.90657 0.96749 0.89570 0.89689 0.88995 0.87287 0.87953 0.89989 0.89131 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 14.32 67.78 0.97 -0.29 16 2 C -0.19 -2.05 9.85 25.65 0.25 -1.80 16 3 C 0.12 1.36 5.79 85.63 0.50 1.86 16 4 N -0.43 -8.64 2.66 -498.42 -1.33 -9.97 16 5 C 0.01 0.27 6.84 40.95 0.28 0.55 16 6 C -0.08 -1.04 10.05 71.24 0.72 -0.32 16 7 C -0.18 -5.04 10.58 23.65 0.25 -4.79 16 8 C -0.29 -9.69 6.29 -18.87 -0.12 -9.81 16 9 C 0.43 16.88 6.63 27.83 0.18 17.06 16 10 O -0.48 -20.55 13.08 -3.24 -0.04 -20.59 16 11 C 0.03 1.24 4.83 85.56 0.41 1.66 16 12 N -0.53 -26.08 4.09 -905.36 -3.70 -29.78 16 13 C 0.21 12.06 4.57 85.56 0.39 12.45 16 14 C -0.52 -30.96 8.61 25.60 0.22 -30.74 16 15 H 0.05 3.29 7.64 -2.91 -0.02 3.27 16 16 C 0.00 0.28 5.46 84.65 0.46 0.74 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 18 Si 0.97 46.01 29.54 68.60 2.03 48.03 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 22 C 0.10 4.10 4.75 86.30 0.41 4.51 16 23 C -0.15 -6.05 5.17 -10.79 -0.06 -6.10 16 24 C -0.19 -6.66 10.10 30.60 0.31 -6.35 16 25 C -0.15 -4.66 10.25 30.60 0.31 -4.35 16 26 C 0.11 2.80 6.94 42.15 0.29 3.09 16 27 C -0.09 -1.96 9.28 71.24 0.66 -1.30 16 28 H 0.11 0.63 7.84 -2.91 -0.02 0.61 16 29 H 0.11 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.11 0.95 7.16 -2.39 -0.02 0.94 16 32 H 0.12 0.88 6.88 -2.38 -0.02 0.86 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.73 6.92 -2.39 -0.02 0.71 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.10 4.37 7.30 -2.39 -0.02 4.35 16 38 H 0.06 2.27 8.12 -2.39 -0.02 2.25 16 39 H -0.04 -2.27 8.00 -2.38 -0.02 -2.29 16 40 H 0.02 0.93 7.25 -2.38 -0.02 0.91 16 41 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.08 3.12 5.85 -2.39 -0.01 3.11 16 43 H 0.01 0.62 7.73 -2.39 -0.02 0.60 16 44 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 45 H 0.08 3.06 8.03 -2.39 -0.02 3.04 16 46 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 47 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 48 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 49 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 50 H 0.09 1.39 7.60 -2.39 -0.02 1.37 16 51 H 0.08 2.12 6.53 -2.39 -0.02 2.11 16 Total: -1.00 -75.23 416.60 4.57 -70.66 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.89 Total: 22.79 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 6.45 Total: -23.93 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -4.75 Total: -96.96 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.04 Total: -20.59 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.23 4.57 -70.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177653173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.325 kcal (2) G-P(sol) polarization free energy of solvation -75.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds