Wall clock time and date at job start Tue Mar 31 2020 16:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.45994 * 2 1 4 4 C 1.38242 * 119.99752 * 60.00323 * 3 2 1 5 5 C 1.38236 * 119.99756 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00328 * 0.02562 * 5 4 3 7 7 C 1.38241 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.38234 * 120.00332 * 240.02418 * 3 2 1 9 9 C 1.53032 * 109.46242 * 119.97960 * 2 1 3 10 10 C 1.53191 * 109.31445 * 58.62589 * 9 2 1 11 11 N 1.46924 * 108.76422 * 54.65802 * 10 9 2 12 12 C 1.34778 * 120.62733 * 126.40804 * 11 10 9 13 13 O 1.21588 * 119.99563 * 174.94192 * 12 11 10 14 14 N 1.34773 * 120.00393 * 354.93790 * 12 11 10 15 15 C 1.46495 * 120.00241 * 185.07629 * 14 12 11 16 16 C 1.52997 * 109.47570 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47385 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47161 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99810 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00059 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99985 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99894 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47103 * 90.00280 * 22 20 18 24 24 H 1.48503 * 109.46806 * 210.00109 * 22 20 18 25 25 H 1.48497 * 109.47298 * 329.99767 * 22 20 18 26 26 C 1.46917 * 118.73756 * 306.38225 * 11 10 9 27 27 C 1.53044 * 109.45940 * 240.03257 * 2 1 3 28 28 H 1.09002 * 109.47604 * 59.99778 * 1 2 3 29 29 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46708 * 299.99682 * 1 2 3 31 31 H 1.07991 * 119.99812 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.99772 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.00006 * 179.70573 * 6 5 4 34 34 H 1.07991 * 119.99867 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.99860 * 0.02562 * 8 3 2 36 36 H 1.09002 * 109.50228 * 178.59625 * 9 2 1 37 37 H 1.09007 * 109.49510 * 298.68833 * 9 2 1 38 38 H 1.08996 * 109.59974 * 294.86592 * 10 9 2 39 39 H 1.09004 * 109.58380 * 174.44133 * 10 9 2 40 40 H 0.97001 * 119.99624 * 5.07615 * 14 12 11 41 41 H 1.09004 * 109.47203 * 300.00080 * 15 14 12 42 42 H 1.09005 * 109.47221 * 59.99786 * 15 14 12 43 43 H 1.09004 * 109.46747 * 300.00144 * 16 15 14 44 44 H 1.08996 * 109.46995 * 59.99508 * 16 15 14 45 45 H 1.08996 * 109.47038 * 299.99735 * 17 16 15 46 46 H 1.08996 * 109.47065 * 60.00138 * 17 16 15 47 47 H 0.97000 * 120.00014 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.59069 * 293.81959 * 26 11 10 49 49 H 1.09002 * 109.70578 * 173.47125 * 26 11 10 50 50 H 1.09001 * 109.49845 * 61.30270 * 27 2 1 51 51 H 1.08995 * 109.50017 * 181.37195 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4209 0.0000 4 6 1.6979 2.2720 1.0369 5 6 2.1580 3.5755 1.0366 6 6 2.9517 4.0282 -0.0007 7 6 3.2858 3.1771 -1.0376 8 6 2.8263 1.8734 -1.0370 9 6 2.0399 -0.7210 1.2498 10 6 1.4990 -2.1542 1.2641 11 7 1.8620 -2.8089 -0.0001 12 6 2.5149 -3.9880 0.0000 13 8 2.7284 -4.5647 -1.0490 14 7 2.9310 -4.5278 1.1626 15 6 3.7366 -5.7514 1.1553 16 6 4.0729 -6.1493 2.5938 17 6 4.9147 -7.4269 2.5861 18 6 5.2465 -7.8184 4.0030 19 1 4.8920 -7.2165 4.8267 20 6 6.0017 -8.9457 4.2479 21 7 6.2917 -9.2871 5.4844 22 14 6.6131 -9.9879 2.8233 23 1 7.9432 -9.4949 2.3844 24 1 6.7287 -11.4028 3.2592 25 1 5.6532 -9.8948 1.6941 26 6 1.4993 -2.1541 -1.2643 27 6 2.0398 -0.7208 -1.2501 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.0775 1.9184 1.8470 32 1 1.8967 4.2405 1.8464 33 1 3.3072 5.0480 -0.0032 34 1 3.9056 3.5309 -1.8481 35 1 3.0867 1.2087 -1.8474 36 1 3.1296 -0.7432 1.2380 37 1 1.6960 -0.1937 2.1397 38 1 0.4142 -2.1346 1.3672 39 1 1.9375 -2.7019 2.0984 40 1 2.6972 -4.1061 2.0043 41 1 3.1737 -6.5542 0.6788 42 1 4.6589 -5.5760 0.6013 43 1 4.6356 -5.3467 3.0706 44 1 3.1505 -6.3249 3.1473 45 1 4.3525 -8.2296 2.1091 46 1 5.8372 -7.2508 2.0327 47 1 6.8227 -10.0803 5.6567 48 1 0.4143 -2.1345 -1.3676 49 1 1.9358 -2.7011 -2.1000 50 1 1.6958 -0.1935 -2.1399 51 1 3.1295 -0.7425 -1.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178760696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:25 Heat of formation + Delta-G solvation = -15.085319 kcal Electronic energy + Delta-G solvation = -27965.473398 eV Core-core repulsion = 24250.080573 eV Total energy + Delta-G solvation = -3715.392826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04922 -39.72124 -37.88620 -35.54222 -34.45566 -33.29499 -31.96710 -31.37518 -30.80592 -30.23687 -28.15421 -27.03906 -25.01934 -24.18349 -22.88877 -22.33846 -21.91843 -20.59994 -20.13175 -18.78247 -18.10661 -17.23173 -16.73938 -16.22166 -15.81707 -15.52893 -15.33939 -14.83392 -14.71503 -14.54969 -14.36223 -14.27481 -13.92126 -13.82902 -13.55441 -13.49872 -12.85489 -12.68951 -12.54679 -12.37230 -12.15709 -12.04977 -11.93005 -11.85415 -11.53753 -11.48992 -11.13203 -11.03586 -10.88127 -10.86901 -10.57989 -10.20281 -9.98976 -9.79936 -9.65894 -9.23587 -9.21708 -9.01932 -8.97363 -8.54725 -8.49663 -6.05514 -4.04080 1.03694 1.08113 2.65714 3.28646 3.32362 3.39822 3.44638 3.45540 3.92868 4.17360 4.21891 4.45457 4.46084 4.67399 4.69805 4.74228 4.75906 4.81714 4.96270 4.98846 5.11892 5.15933 5.24719 5.28693 5.31997 5.37094 5.44112 5.53980 5.55811 5.56886 5.64489 5.70297 5.71274 5.72446 5.78904 5.80639 6.02117 6.05688 6.17799 6.20251 6.30694 6.35785 6.44470 6.48575 6.68211 6.71755 6.84402 6.97236 7.24716 7.38180 7.76619 8.03273 8.51013 8.69390 8.98247 9.56853 11.07678 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.002060 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.423763 B =13589.171126 C =14132.871474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.019 4.019 3 C -0.067 4.067 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.127 4.127 7 C -0.119 4.119 8 C -0.121 4.121 9 C -0.121 4.121 10 C 0.110 3.890 11 N -0.631 5.631 12 C 0.705 3.295 13 O -0.593 6.593 14 N -0.742 5.742 15 C 0.132 3.868 16 C -0.112 4.112 17 C -0.011 4.011 18 C -0.521 4.521 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 C 0.130 3.870 27 C -0.126 4.126 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.394 0.606 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.263 0.737 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 27.977 -12.180 33.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 C -0.067 4.067 4 C -0.133 4.133 5 C -0.137 4.137 6 C -0.145 4.145 7 C -0.137 4.137 8 C -0.138 4.138 9 C -0.159 4.159 10 C -0.013 4.013 11 N -0.370 5.370 12 C 0.407 3.593 13 O -0.471 6.471 14 N -0.399 5.399 15 C 0.009 3.991 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.189 1.189 26 C 0.006 3.994 27 C -0.164 4.164 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.112 0.888 50 H 0.096 0.904 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.727 27.377 -12.843 32.809 hybrid contribution 0.373 -0.239 -0.068 0.448 sum -12.354 27.138 -12.911 32.493 Atomic orbital electron populations 1.22000 0.93438 1.02395 1.02209 1.19458 0.95828 0.90770 0.95878 1.19823 0.97230 0.94972 0.94662 1.20991 1.00353 0.93632 0.98354 1.21140 0.98082 0.95924 0.98566 1.21152 0.98911 0.99733 0.94733 1.21172 0.99911 0.93985 0.98600 1.21222 0.97955 0.95936 0.98734 1.22008 1.01701 0.94934 0.97276 1.21668 1.00279 0.93122 0.86251 1.47237 1.61548 1.21299 1.06920 1.15898 0.78330 0.80557 0.84556 1.90899 1.62900 1.62381 1.30940 1.45511 1.57578 1.29880 1.06909 1.21514 0.93952 0.84358 0.99318 1.21700 1.00711 1.00048 0.92597 1.19500 0.94741 0.92491 0.98163 1.21095 1.33102 1.10355 0.91354 0.91031 1.25033 0.95634 0.97335 0.95539 1.69915 1.39113 1.26165 1.19033 0.86772 0.79702 0.79580 0.83238 1.20253 1.21388 1.18858 1.21445 0.99527 0.91953 0.86441 1.22112 1.01541 0.95393 0.97401 0.92361 0.91574 0.92303 0.86133 0.86209 0.86333 0.86213 0.85622 0.91005 0.90435 0.90985 0.90130 0.77003 0.91912 0.92092 0.92230 0.92166 0.96256 0.96724 0.92720 0.91653 0.88805 0.90396 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 7.53 37.16 0.28 -0.58 16 2 C -0.02 -0.13 0.60 -155.62 -0.09 -0.23 16 3 C -0.07 -0.51 4.76 -104.62 -0.50 -1.00 16 4 C -0.12 -0.83 8.70 -39.58 -0.34 -1.17 16 5 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 6 C -0.13 -0.90 10.05 -39.58 -0.40 -1.29 16 7 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 8 C -0.12 -0.93 8.98 -39.58 -0.36 -1.29 16 9 C -0.12 -0.88 4.74 -26.62 -0.13 -1.01 16 10 C 0.11 0.89 5.96 -3.71 -0.02 0.87 16 11 N -0.63 -7.02 2.97 -178.50 -0.53 -7.56 16 12 C 0.71 10.77 8.30 -86.92 -0.72 10.04 16 13 O -0.59 -11.42 15.79 5.29 0.08 -11.34 16 14 N -0.74 -10.73 5.47 -65.23 -0.36 -11.09 16 15 C 0.13 2.26 5.68 -4.05 -0.02 2.23 16 16 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 17 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 18 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 19 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 22 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 26 C 0.13 1.24 5.95 -3.71 -0.02 1.21 16 27 C -0.13 -0.97 3.56 -26.61 -0.09 -1.06 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.40 4.98 -51.93 -0.26 0.14 16 30 H 0.06 0.32 7.39 -51.93 -0.38 -0.07 16 31 H 0.12 0.70 7.09 -52.49 -0.37 0.33 16 32 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.86 5.90 -52.49 -0.31 0.55 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.46 7.34 -51.93 -0.38 0.08 16 38 H 0.07 0.49 6.69 -51.93 -0.35 0.14 16 39 H 0.08 0.63 5.57 -51.93 -0.29 0.34 16 40 H 0.39 4.67 5.93 -40.82 -0.24 4.43 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 46 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 49 H 0.09 1.08 7.04 -51.93 -0.37 0.72 16 50 H 0.08 0.50 7.43 -51.93 -0.39 0.11 16 51 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -33.89 389.47 -10.96 -44.86 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.24 Total: 0.72 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.90 Total: -11.63 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.11 Total: -45.68 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.89 -10.96 -44.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178760696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.770 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds