Wall clock time and date at job start Tue Mar 31 2020 16:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.45994 * 2 1 4 4 C 1.38242 * 119.99752 * 60.00323 * 3 2 1 5 5 C 1.38236 * 119.99756 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00328 * 0.02562 * 5 4 3 7 7 C 1.38241 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.38234 * 120.00332 * 240.02418 * 3 2 1 9 9 C 1.53032 * 109.46242 * 119.97960 * 2 1 3 10 10 C 1.53191 * 109.31445 * 58.62589 * 9 2 1 11 11 N 1.46924 * 108.76422 * 54.65802 * 10 9 2 12 12 C 1.34778 * 120.62733 * 126.40804 * 11 10 9 13 13 O 1.21588 * 119.99563 * 174.94192 * 12 11 10 14 14 N 1.34773 * 120.00393 * 354.93790 * 12 11 10 15 15 C 1.46495 * 120.00241 * 185.07629 * 14 12 11 16 16 C 1.52997 * 109.47570 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47385 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47161 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99810 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00059 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99985 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99894 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47103 * 90.00280 * 22 20 18 24 24 H 1.48503 * 109.46806 * 210.00109 * 22 20 18 25 25 H 1.48497 * 109.47298 * 329.99767 * 22 20 18 26 26 C 1.46917 * 118.73756 * 306.38225 * 11 10 9 27 27 C 1.53044 * 109.45940 * 240.03257 * 2 1 3 28 28 H 1.09002 * 109.47604 * 59.99778 * 1 2 3 29 29 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46708 * 299.99682 * 1 2 3 31 31 H 1.07991 * 119.99812 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.99772 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.00006 * 179.70573 * 6 5 4 34 34 H 1.07991 * 119.99867 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.99860 * 0.02562 * 8 3 2 36 36 H 1.09002 * 109.50228 * 178.59625 * 9 2 1 37 37 H 1.09007 * 109.49510 * 298.68833 * 9 2 1 38 38 H 1.08996 * 109.59974 * 294.86592 * 10 9 2 39 39 H 1.09004 * 109.58380 * 174.44133 * 10 9 2 40 40 H 0.97001 * 119.99624 * 5.07615 * 14 12 11 41 41 H 1.09004 * 109.47203 * 300.00080 * 15 14 12 42 42 H 1.09005 * 109.47221 * 59.99786 * 15 14 12 43 43 H 1.09004 * 109.46747 * 300.00144 * 16 15 14 44 44 H 1.08996 * 109.46995 * 59.99508 * 16 15 14 45 45 H 1.08996 * 109.47038 * 299.99735 * 17 16 15 46 46 H 1.08996 * 109.47065 * 60.00138 * 17 16 15 47 47 H 0.97000 * 120.00014 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.59069 * 293.81959 * 26 11 10 49 49 H 1.09002 * 109.70578 * 173.47125 * 26 11 10 50 50 H 1.09001 * 109.49845 * 61.30270 * 27 2 1 51 51 H 1.08995 * 109.50017 * 181.37195 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4209 0.0000 4 6 1.6979 2.2720 1.0369 5 6 2.1580 3.5755 1.0366 6 6 2.9517 4.0282 -0.0007 7 6 3.2858 3.1771 -1.0376 8 6 2.8263 1.8734 -1.0370 9 6 2.0399 -0.7210 1.2498 10 6 1.4990 -2.1542 1.2641 11 7 1.8620 -2.8089 -0.0001 12 6 2.5149 -3.9880 0.0000 13 8 2.7284 -4.5647 -1.0490 14 7 2.9310 -4.5278 1.1626 15 6 3.7366 -5.7514 1.1553 16 6 4.0729 -6.1493 2.5938 17 6 4.9147 -7.4269 2.5861 18 6 5.2465 -7.8184 4.0030 19 1 4.8920 -7.2165 4.8267 20 6 6.0017 -8.9457 4.2479 21 7 6.2917 -9.2871 5.4844 22 14 6.6131 -9.9879 2.8233 23 1 7.9432 -9.4949 2.3844 24 1 6.7287 -11.4028 3.2592 25 1 5.6532 -9.8948 1.6941 26 6 1.4993 -2.1541 -1.2643 27 6 2.0398 -0.7208 -1.2501 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.0775 1.9184 1.8470 32 1 1.8967 4.2405 1.8464 33 1 3.3072 5.0480 -0.0032 34 1 3.9056 3.5309 -1.8481 35 1 3.0867 1.2087 -1.8474 36 1 3.1296 -0.7432 1.2380 37 1 1.6960 -0.1937 2.1397 38 1 0.4142 -2.1346 1.3672 39 1 1.9375 -2.7019 2.0984 40 1 2.6972 -4.1061 2.0043 41 1 3.1737 -6.5542 0.6788 42 1 4.6589 -5.5760 0.6013 43 1 4.6356 -5.3467 3.0706 44 1 3.1505 -6.3249 3.1473 45 1 4.3525 -8.2296 2.1091 46 1 5.8372 -7.2508 2.0327 47 1 6.8227 -10.0803 5.6567 48 1 0.4143 -2.1345 -1.3676 49 1 1.9358 -2.7011 -2.1000 50 1 1.6958 -0.1935 -2.1399 51 1 3.1295 -0.7425 -1.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178760696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:24 Heat of formation + Delta-G solvation = -34.111051 kcal Electronic energy + Delta-G solvation = -27966.298416 eV Core-core repulsion = 24250.080573 eV Total energy + Delta-G solvation = -3716.217843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83937 -40.57058 -38.64907 -37.00996 -35.41632 -35.01540 -33.31877 -32.39779 -31.45709 -30.92463 -29.09094 -28.37104 -25.85751 -24.95286 -24.30252 -22.99845 -22.60912 -22.19670 -21.15369 -19.78259 -19.01168 -18.72530 -17.79471 -17.34847 -16.91838 -16.34449 -16.14278 -16.01737 -15.80134 -15.51750 -15.38010 -15.06052 -14.90203 -14.74934 -14.60144 -14.43555 -14.21636 -13.78815 -13.64178 -13.40963 -13.19538 -12.92072 -12.76086 -12.70035 -12.63227 -12.54035 -12.18664 -12.05645 -11.89898 -11.77907 -11.70803 -11.59144 -11.49671 -11.32658 -11.21078 -11.10043 -10.75626 -10.21348 -9.75925 -9.54258 -9.44343 -8.28887 -6.32477 0.51300 0.55738 1.37187 1.38854 1.50807 1.63599 2.11722 2.36803 2.92935 2.93366 3.06798 3.59050 3.64260 3.83162 4.07912 4.09935 4.17038 4.19694 4.20340 4.21878 4.29524 4.36246 4.38605 4.50286 4.56206 4.61575 4.69439 4.74648 4.78318 4.86874 4.88229 4.90454 4.94465 4.99847 5.04042 5.05367 5.15548 5.22121 5.23465 5.25288 5.41646 5.47635 5.51578 5.56435 5.58346 5.66101 5.66453 5.69140 5.78564 5.93658 6.18224 6.28043 6.75157 6.95532 7.32184 7.53908 8.87365 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.002060 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.423763 B =13589.171126 C =14132.871474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.013 4.013 3 C -0.075 4.075 4 C -0.123 4.123 5 C -0.128 4.128 6 C -0.137 4.137 7 C -0.131 4.131 8 C -0.136 4.136 9 C -0.116 4.116 10 C 0.106 3.894 11 N -0.624 5.624 12 C 0.699 3.301 13 O -0.638 6.638 14 N -0.735 5.735 15 C 0.146 3.854 16 C -0.098 4.098 17 C -0.012 4.012 18 C -0.529 4.529 19 H 0.038 0.962 20 C 0.004 3.996 21 N -0.950 5.950 22 Si 0.946 3.054 23 H -0.268 1.268 24 H -0.284 1.284 25 H -0.248 1.248 26 C 0.127 3.873 27 C -0.118 4.118 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.407 0.593 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.019 0.981 47 H 0.266 0.734 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 29.412 -12.926 35.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.014 4.014 3 C -0.075 4.075 4 C -0.140 4.140 5 C -0.146 4.146 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.154 4.154 9 C -0.154 4.154 10 C -0.017 4.017 11 N -0.361 5.361 12 C 0.401 3.599 13 O -0.520 6.520 14 N -0.393 5.393 15 C 0.022 3.978 16 C -0.136 4.136 17 C -0.050 4.050 18 C -0.567 4.567 19 H 0.057 0.943 20 C -0.193 4.193 21 N -0.590 5.590 22 Si 0.770 3.230 23 H -0.193 1.193 24 H -0.210 1.210 25 H -0.172 1.172 26 C 0.005 3.995 27 C -0.156 4.156 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.246 0.754 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.075 0.925 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.110 0.890 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.887 28.875 -13.569 34.796 hybrid contribution 0.689 -0.567 0.228 0.921 sum -13.198 28.308 -13.340 33.963 Atomic orbital electron populations 1.21975 0.92277 1.02600 1.02834 1.19403 0.96604 0.90317 0.95034 1.19909 0.97422 0.95239 0.94891 1.21209 1.00504 0.93727 0.98596 1.21432 0.97844 0.96278 0.99014 1.21429 0.98895 1.00528 0.94664 1.21407 1.00178 0.94045 0.99239 1.21383 0.98476 0.96370 0.99198 1.21975 1.00569 0.94547 0.98339 1.21931 1.01691 0.93291 0.84748 1.47308 1.60103 1.19972 1.08712 1.16075 0.78546 0.81457 0.83840 1.90865 1.64750 1.63954 1.32436 1.45251 1.57223 1.29180 1.07606 1.21141 0.93915 0.85222 0.97562 1.21464 1.00165 0.98061 0.93917 1.19463 0.95759 0.94694 0.95089 1.21449 1.32489 1.09848 0.92894 0.94318 1.25978 0.96057 0.98954 0.98291 1.70057 1.40436 1.27108 1.21428 0.85709 0.79637 0.77630 0.80009 1.19279 1.21001 1.17201 1.21566 1.00531 0.92392 0.85034 1.22036 1.00481 0.94358 0.98740 0.92283 0.91469 0.91245 0.84671 0.84562 0.84845 0.85120 0.85453 0.92795 0.88509 0.88796 0.89728 0.75381 0.92801 0.92851 0.91768 0.91685 0.96078 0.96244 0.92527 0.89735 0.91166 0.89019 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.53 71.98 0.54 -0.74 16 2 C -0.01 -0.16 0.60 -52.90 -0.03 -0.19 16 3 C -0.07 -1.01 4.76 -19.87 -0.09 -1.10 16 4 C -0.12 -1.50 8.70 22.27 0.19 -1.31 16 5 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 6 C -0.14 -1.73 10.05 22.27 0.22 -1.51 16 7 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 8 C -0.14 -1.99 8.98 22.27 0.20 -1.79 16 9 C -0.12 -1.44 4.74 30.67 0.15 -1.30 16 10 C 0.11 1.46 5.96 86.36 0.52 1.98 16 11 N -0.62 -13.12 2.97 -836.92 -2.49 -15.61 16 12 C 0.70 20.92 8.30 179.06 1.49 22.41 16 13 O -0.64 -24.74 15.79 -3.99 -0.06 -24.80 16 14 N -0.73 -20.41 5.47 -478.54 -2.62 -23.03 16 15 C 0.15 4.86 5.68 86.38 0.49 5.35 16 16 C -0.10 -3.60 5.27 30.59 0.16 -3.43 16 17 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 18 C -0.53 -30.11 9.66 25.60 0.25 -29.87 16 19 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 20 C 0.00 0.24 5.47 84.65 0.46 0.70 16 21 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 22 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 26 C 0.13 2.32 5.95 86.37 0.51 2.83 16 27 C -0.12 -1.68 3.56 30.67 0.11 -1.58 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.61 4.98 -2.39 -0.01 0.60 16 30 H 0.07 0.51 7.39 -2.39 -0.02 0.49 16 31 H 0.14 1.17 7.09 -2.92 -0.02 1.15 16 32 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 33 H 0.13 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.13 1.37 8.06 -2.92 -0.02 1.34 16 35 H 0.13 1.69 5.90 -2.91 -0.02 1.68 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 0.87 7.34 -2.38 -0.02 0.85 16 38 H 0.09 0.97 6.69 -2.39 -0.02 0.95 16 39 H 0.08 1.11 5.57 -2.38 -0.01 1.10 16 40 H 0.41 8.95 5.93 -92.71 -0.55 8.40 16 41 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 46 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 47 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 48 H 0.08 1.23 6.69 -2.38 -0.02 1.21 16 49 H 0.07 1.64 7.04 -2.39 -0.02 1.62 16 50 H 0.09 1.06 7.43 -2.39 -0.02 1.04 16 51 H 0.06 0.98 7.60 -2.39 -0.02 0.97 16 Total: -1.00 -73.95 389.47 3.06 -70.89 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.32 Total: 17.95 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 5.73 Total: -12.87 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.80 Total: -97.77 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -73.95 3.06 -70.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178760696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.775 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds