Wall clock time and date at job start Tue Mar 31 2020 15:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46950 * 2 1 4 4 C 1.53004 * 109.46883 * 240.00406 * 2 1 3 5 5 C 1.53002 * 109.46883 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47477 * 59.99991 * 5 4 2 7 7 C 1.53004 * 109.47071 * 299.99894 * 6 5 4 8 8 H 1.09002 * 109.46694 * 300.00355 * 7 6 5 9 9 C 1.50694 * 109.47579 * 179.97438 * 7 6 5 10 10 O 1.21276 * 120.00208 * 255.95366 * 9 7 6 11 11 N 1.34782 * 119.99829 * 75.67749 * 9 7 6 12 12 C 1.46502 * 120.00006 * 5.04887 * 11 9 7 13 13 C 1.50695 * 109.46990 * 83.71084 * 12 11 9 14 14 H 1.08008 * 120.00317 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99960 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00073 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47351 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46677 * 120.00318 * 17 15 13 20 20 H 1.48502 * 109.47430 * 239.99881 * 17 15 13 21 21 C 1.46494 * 120.00135 * 185.05141 * 11 9 7 22 22 C 1.50699 * 109.47267 * 89.99530 * 21 11 9 23 23 C 1.38677 * 120.42290 * 269.72199 * 22 21 11 24 24 C 1.38626 * 118.42114 * 179.78099 * 23 22 21 25 25 C 1.38231 * 119.15982 * 0.51782 * 24 23 22 26 26 N 1.31852 * 120.76636 * 359.72428 * 25 24 23 27 27 C 1.31890 * 121.72446 * 359.97438 * 26 25 24 28 28 C 1.52995 * 109.47477 * 120.00397 * 2 1 3 29 29 H 1.08996 * 109.47101 * 299.99763 * 1 2 3 30 30 H 1.09001 * 109.47194 * 60.00280 * 1 2 3 31 31 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47169 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47405 * 300.00128 * 3 2 1 34 34 H 1.09003 * 109.47373 * 60.00145 * 3 2 1 35 35 H 1.09002 * 109.46694 * 299.99388 * 4 2 1 36 36 H 1.08991 * 109.47682 * 59.99660 * 4 2 1 37 37 H 1.09003 * 109.46964 * 179.97438 * 5 4 2 38 38 H 1.08999 * 109.47142 * 299.99728 * 5 4 2 39 39 H 1.09000 * 109.47608 * 180.02562 * 6 5 4 40 40 H 1.09002 * 109.47651 * 59.99663 * 6 5 4 41 41 H 1.08997 * 109.46926 * 203.71014 * 12 11 9 42 42 H 1.09000 * 109.46942 * 323.71327 * 12 11 9 43 43 H 0.96993 * 120.00110 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.47727 * 209.99843 * 21 11 9 45 45 H 1.09006 * 109.46871 * 330.00004 * 21 11 9 46 46 H 1.07998 * 120.78562 * 0.02562 * 23 22 21 47 47 H 1.08002 * 120.42152 * 180.26008 * 24 23 22 48 48 H 1.07999 * 119.61425 * 179.70349 * 25 24 23 49 49 H 1.07993 * 119.61857 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.47149 * 59.99742 * 28 2 1 51 51 H 1.09003 * 109.46613 * 299.99712 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5706 -0.7204 1.2488 8 1 3.9336 0.3075 1.2485 9 6 4.0730 -1.4307 2.4792 10 8 3.3231 -2.1349 3.1215 11 7 5.3572 -1.2879 2.8627 12 6 6.2354 -0.3570 2.1496 13 6 6.0402 1.0346 2.6940 14 1 5.3324 1.2084 3.4911 15 6 6.7651 2.0861 2.1745 16 7 7.6266 1.8746 1.2035 17 14 6.5226 3.8111 2.8488 18 1 5.5039 3.7818 3.9288 19 1 7.8085 4.3142 3.3953 20 1 6.0633 4.7088 1.7586 21 6 5.8748 -2.0636 3.9925 22 6 6.4335 -3.3702 3.4908 23 6 5.6236 -4.4923 3.4022 24 6 6.1793 -5.6716 2.9307 25 6 7.5156 -5.6924 2.5775 26 7 8.2572 -4.6070 2.6797 27 6 7.7607 -3.4666 3.1184 28 6 2.0401 -0.7213 1.2491 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.9333 -1.2348 -2.1395 38 1 3.9329 0.3072 -1.2499 39 1 5.1706 -1.4408 -0.0005 40 1 3.7177 -2.4694 -0.0002 41 1 7.2736 -0.6588 2.2878 42 1 5.9917 -0.3690 1.0873 43 1 8.1363 2.6144 0.8378 44 1 6.6630 -1.4987 4.4904 45 1 5.0677 -2.2606 4.6981 46 1 4.5835 -4.4475 3.6898 47 1 5.5770 -6.5639 2.8445 48 1 7.9573 -6.6084 2.2139 49 1 8.3990 -2.5982 3.1880 50 1 1.6768 -1.7490 1.2491 51 1 1.6768 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179367040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:44 Heat of formation + Delta-G solvation = -32.587134 kcal Electronic energy + Delta-G solvation = -30081.051636 eV Core-core repulsion = 26364.899875 eV Total energy + Delta-G solvation = -3716.151761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.26063 -39.69451 -38.05061 -35.22655 -33.38091 -32.79271 -32.07737 -31.32496 -30.48970 -27.57220 -27.08683 -26.29373 -25.86113 -23.53770 -23.24189 -22.65122 -21.61061 -21.01577 -18.32660 -18.04818 -16.92175 -16.69124 -16.27498 -15.79843 -15.60595 -15.14260 -14.71581 -14.49463 -14.41900 -14.11784 -13.95896 -13.53322 -13.33078 -13.22058 -12.79633 -12.66575 -12.60115 -12.30761 -12.20591 -11.84067 -11.75738 -11.67384 -11.56711 -11.25929 -11.20158 -11.10855 -10.94346 -10.72578 -10.67413 -10.56597 -10.26838 -10.07742 -9.80992 -9.75378 -9.68880 -9.58363 -9.23738 -9.04007 -8.70423 -8.53835 -7.77846 -6.21737 -4.29141 1.29920 1.51664 3.18850 3.28270 3.31191 3.40186 3.80688 4.21013 4.31667 4.66261 4.89298 4.94797 4.97865 5.02707 5.11034 5.16292 5.23145 5.29265 5.36692 5.45383 5.51895 5.63649 5.64475 5.70330 5.79290 5.86241 5.87742 5.91063 5.94471 6.01802 6.06838 6.11350 6.15900 6.18142 6.26691 6.27826 6.34257 6.40124 6.48337 6.55049 6.57792 6.59023 6.63341 6.69309 6.72834 6.92831 6.94234 7.20929 7.49510 7.73400 8.02564 8.18133 8.28345 8.76654 9.00341 9.38965 10.84623 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008098 B = 0.005602 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.879966 B = 4997.254498 C = 7309.089362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.148 4.148 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.104 4.104 7 C -0.106 4.106 8 H 0.116 0.884 9 C 0.527 3.473 10 O -0.576 6.576 11 N -0.592 5.592 12 C 0.234 3.766 13 C -0.538 4.538 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.887 5.887 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.158 3.842 22 C -0.143 4.143 23 C -0.057 4.057 24 C -0.181 4.181 25 C 0.089 3.911 26 N -0.489 5.489 27 C 0.114 3.886 28 C -0.083 4.083 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.035 0.965 42 H 0.045 0.955 43 H 0.265 0.735 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.136 0.864 47 H 0.129 0.871 48 H 0.150 0.850 49 H 0.157 0.843 50 H 0.064 0.936 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 -7.931 -2.237 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.205 4.205 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.127 4.127 8 H 0.134 0.866 9 C 0.316 3.684 10 O -0.457 6.457 11 N -0.321 5.321 12 C 0.114 3.886 13 C -0.577 4.577 14 H 0.079 0.921 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.034 3.966 22 C -0.146 4.146 23 C -0.084 4.084 24 C -0.201 4.201 25 C -0.068 4.068 26 N -0.197 5.197 27 C -0.043 4.043 28 C -0.121 4.121 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.154 0.846 47 H 0.147 0.853 48 H 0.167 0.833 49 H 0.174 0.826 50 H 0.083 0.917 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.500 -8.212 -2.264 10.715 hybrid contribution -0.790 1.103 0.524 1.454 sum -7.291 -7.109 -1.740 10.331 Atomic orbital electron populations 1.21838 0.95064 1.01330 1.01323 1.20542 0.94735 0.95840 0.95373 1.22007 1.02548 0.94888 1.01052 1.21584 0.95851 0.99946 0.96908 1.21550 0.95233 1.01569 0.97208 1.21463 1.01208 0.98393 0.93161 1.21341 0.96170 1.02639 0.92533 0.86602 1.20565 0.81474 0.80530 0.85854 1.90541 1.56264 1.42114 1.56806 1.48252 1.11024 1.40931 1.31940 1.19570 0.89396 0.86808 0.92793 1.21518 1.23807 0.92092 1.20257 0.92074 1.24907 0.94757 0.99115 0.94769 1.69926 1.24850 1.32237 1.25542 0.86531 0.78196 0.84233 0.79114 1.19652 1.20857 1.20773 1.20125 0.99293 0.87784 0.89439 1.21455 0.95230 0.97052 1.00885 1.21646 1.00221 0.91859 0.94669 1.22098 0.96905 0.99035 1.02030 1.22687 0.91006 0.96686 0.96461 1.67703 1.39189 0.99491 1.13334 1.22796 0.93092 0.95357 0.93064 1.21362 0.93598 1.00522 0.96600 0.92800 0.93024 0.92970 0.91071 0.93279 0.92857 0.92383 0.92418 0.92294 0.90967 0.90893 0.92675 0.94719 0.93733 0.92548 0.89311 0.89815 0.84601 0.85306 0.83317 0.82578 0.91746 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.47 37.16 0.31 -1.29 16 2 C -0.06 -0.87 0.77 -154.51 -0.12 -0.99 16 3 C -0.15 -2.08 7.78 37.16 0.29 -1.80 16 4 C -0.11 -1.34 4.73 -26.73 -0.13 -1.47 16 5 C -0.12 -1.68 5.65 -26.73 -0.15 -1.83 16 6 C -0.10 -1.72 4.93 -26.73 -0.13 -1.85 16 7 C -0.11 -1.90 1.41 -91.74 -0.13 -2.03 16 8 H 0.12 2.31 5.01 -51.93 -0.26 2.05 16 9 C 0.53 10.53 6.81 -10.99 -0.07 10.46 16 10 O -0.58 -12.24 15.44 5.56 0.09 -12.15 16 11 N -0.59 -11.82 2.46 -176.44 -0.43 -12.26 16 12 C 0.23 5.25 4.78 -5.19 -0.02 5.22 16 13 C -0.54 -13.31 8.58 -34.44 -0.30 -13.61 16 14 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -23.49 13.29 55.43 0.74 -22.76 16 17 Si 0.89 19.98 29.54 -169.99 -5.02 14.95 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.16 2.78 5.57 -5.20 -0.03 2.75 16 22 C -0.14 -2.34 5.48 -104.48 -0.57 -2.92 16 23 C -0.06 -0.87 9.86 -39.28 -0.39 -1.26 16 24 C -0.18 -2.38 10.11 -39.44 -0.40 -2.77 16 25 C 0.09 1.21 11.18 -17.55 -0.20 1.02 16 26 N -0.49 -7.95 10.36 -13.25 -0.14 -8.09 16 27 C 0.11 1.88 10.86 -17.55 -0.19 1.69 16 28 C -0.08 -1.32 3.43 -26.71 -0.09 -1.42 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.14 4.81 -51.92 -0.25 0.89 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.10 6.43 -51.93 -0.33 0.76 16 39 H 0.07 1.32 6.12 -51.93 -0.32 1.00 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.82 8.02 -51.93 -0.42 0.40 16 42 H 0.04 1.04 4.82 -51.93 -0.25 0.79 16 43 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 44 H 0.09 1.51 8.02 -51.93 -0.42 1.09 16 45 H 0.08 1.47 7.31 -51.93 -0.38 1.09 16 46 H 0.14 2.09 7.95 -52.49 -0.42 1.67 16 47 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 48 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 49 H 0.16 2.52 8.06 -52.49 -0.42 2.09 16 50 H 0.06 1.06 7.93 -51.93 -0.41 0.64 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -27.63 396.42 -9.70 -37.34 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.49 Total: 7.45 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.41 Total: -10.45 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.17 Total: -43.10 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -27.63 -9.70 -37.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179367040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.748 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds