Wall clock time and date at job start Tue Mar 31 2020 15:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46950 * 2 1 4 4 C 1.53004 * 109.46883 * 240.00406 * 2 1 3 5 5 C 1.53002 * 109.46883 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47477 * 59.99991 * 5 4 2 7 7 C 1.53004 * 109.47071 * 299.99894 * 6 5 4 8 8 H 1.09002 * 109.46694 * 300.00355 * 7 6 5 9 9 C 1.50694 * 109.47579 * 179.97438 * 7 6 5 10 10 O 1.21276 * 120.00208 * 255.95366 * 9 7 6 11 11 N 1.34782 * 119.99829 * 75.67749 * 9 7 6 12 12 C 1.46502 * 120.00006 * 5.04887 * 11 9 7 13 13 C 1.50695 * 109.46990 * 83.71084 * 12 11 9 14 14 H 1.08008 * 120.00317 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99960 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00073 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47351 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46677 * 120.00318 * 17 15 13 20 20 H 1.48502 * 109.47430 * 239.99881 * 17 15 13 21 21 C 1.46494 * 120.00135 * 185.05141 * 11 9 7 22 22 C 1.50699 * 109.47267 * 89.99530 * 21 11 9 23 23 C 1.38677 * 120.42290 * 269.72199 * 22 21 11 24 24 C 1.38626 * 118.42114 * 179.78099 * 23 22 21 25 25 C 1.38231 * 119.15982 * 0.51782 * 24 23 22 26 26 N 1.31852 * 120.76636 * 359.72428 * 25 24 23 27 27 C 1.31890 * 121.72446 * 359.97438 * 26 25 24 28 28 C 1.52995 * 109.47477 * 120.00397 * 2 1 3 29 29 H 1.08996 * 109.47101 * 299.99763 * 1 2 3 30 30 H 1.09001 * 109.47194 * 60.00280 * 1 2 3 31 31 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47169 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47405 * 300.00128 * 3 2 1 34 34 H 1.09003 * 109.47373 * 60.00145 * 3 2 1 35 35 H 1.09002 * 109.46694 * 299.99388 * 4 2 1 36 36 H 1.08991 * 109.47682 * 59.99660 * 4 2 1 37 37 H 1.09003 * 109.46964 * 179.97438 * 5 4 2 38 38 H 1.08999 * 109.47142 * 299.99728 * 5 4 2 39 39 H 1.09000 * 109.47608 * 180.02562 * 6 5 4 40 40 H 1.09002 * 109.47651 * 59.99663 * 6 5 4 41 41 H 1.08997 * 109.46926 * 203.71014 * 12 11 9 42 42 H 1.09000 * 109.46942 * 323.71327 * 12 11 9 43 43 H 0.96993 * 120.00110 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.47727 * 209.99843 * 21 11 9 45 45 H 1.09006 * 109.46871 * 330.00004 * 21 11 9 46 46 H 1.07998 * 120.78562 * 0.02562 * 23 22 21 47 47 H 1.08002 * 120.42152 * 180.26008 * 24 23 22 48 48 H 1.07999 * 119.61425 * 179.70349 * 25 24 23 49 49 H 1.07993 * 119.61857 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.47149 * 59.99742 * 28 2 1 51 51 H 1.09003 * 109.46613 * 299.99712 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5706 -0.7204 1.2488 8 1 3.9336 0.3075 1.2485 9 6 4.0730 -1.4307 2.4792 10 8 3.3231 -2.1349 3.1215 11 7 5.3572 -1.2879 2.8627 12 6 6.2354 -0.3570 2.1496 13 6 6.0402 1.0346 2.6940 14 1 5.3324 1.2084 3.4911 15 6 6.7651 2.0861 2.1745 16 7 7.6266 1.8746 1.2035 17 14 6.5226 3.8111 2.8488 18 1 5.5039 3.7818 3.9288 19 1 7.8085 4.3142 3.3953 20 1 6.0633 4.7088 1.7586 21 6 5.8748 -2.0636 3.9925 22 6 6.4335 -3.3702 3.4908 23 6 5.6236 -4.4923 3.4022 24 6 6.1793 -5.6716 2.9307 25 6 7.5156 -5.6924 2.5775 26 7 8.2572 -4.6070 2.6797 27 6 7.7607 -3.4666 3.1184 28 6 2.0401 -0.7213 1.2491 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.9333 -1.2348 -2.1395 38 1 3.9329 0.3072 -1.2499 39 1 5.1706 -1.4408 -0.0005 40 1 3.7177 -2.4694 -0.0002 41 1 7.2736 -0.6588 2.2878 42 1 5.9917 -0.3690 1.0873 43 1 8.1363 2.6144 0.8378 44 1 6.6630 -1.4987 4.4904 45 1 5.0677 -2.2606 4.6981 46 1 4.5835 -4.4475 3.6898 47 1 5.5770 -6.5639 2.8445 48 1 7.9573 -6.6084 2.2139 49 1 8.3990 -2.5982 3.1880 50 1 1.6768 -1.7490 1.2491 51 1 1.6768 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179367040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:42 Heat of formation + Delta-G solvation = -44.572866 kcal Electronic energy + Delta-G solvation = -30081.571376 eV Core-core repulsion = 26364.899875 eV Total energy + Delta-G solvation = -3716.671502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.66185 -40.93124 -39.41567 -36.88770 -34.91869 -34.31010 -33.43382 -32.59127 -31.75865 -29.35086 -28.15332 -27.67588 -27.09286 -25.20463 -24.48533 -24.11697 -22.84878 -22.29652 -19.84570 -19.31645 -18.65255 -18.04407 -17.75191 -17.26297 -17.03301 -16.51038 -16.31544 -15.93651 -15.69828 -15.44043 -15.15174 -14.82873 -14.58904 -14.46184 -14.22438 -14.01533 -13.96818 -13.75798 -13.55358 -13.42220 -13.15700 -12.93220 -12.80451 -12.76584 -12.68168 -12.46875 -12.36878 -12.30127 -12.03111 -11.86097 -11.80160 -11.67580 -11.32819 -11.00875 -10.92347 -10.82677 -10.63545 -10.47151 -10.41861 -9.94354 -9.46663 -8.19425 -6.33075 0.11158 0.31455 1.38410 1.42700 1.51944 1.77994 2.30128 2.45114 2.94289 3.10898 3.52197 3.61110 3.74719 3.78606 3.86945 3.88527 4.06316 4.08182 4.14840 4.22242 4.28271 4.41575 4.46403 4.48298 4.60251 4.65274 4.68598 4.71522 4.73122 4.83357 4.86562 4.89571 4.92413 5.00649 5.07126 5.10581 5.13193 5.17239 5.19048 5.26235 5.29599 5.35303 5.36583 5.43031 5.47870 5.54073 5.67123 5.69938 5.76233 5.83847 6.07945 6.55186 6.82671 6.99722 7.31500 7.42401 8.85995 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008098 B = 0.005602 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.879966 B = 4997.254498 C = 7309.089362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.100 4.100 5 C -0.115 4.115 6 C -0.098 4.098 7 C -0.102 4.102 8 H 0.092 0.908 9 C 0.520 3.480 10 O -0.589 6.589 11 N -0.594 5.594 12 C 0.253 3.747 13 C -0.543 4.543 14 H 0.049 0.951 15 C 0.029 3.971 16 N -0.914 5.914 17 Si 0.948 3.052 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.276 1.276 21 C 0.158 3.842 22 C -0.153 4.153 23 C -0.066 4.066 24 C -0.167 4.167 25 C 0.090 3.910 26 N -0.509 5.509 27 C 0.101 3.899 28 C -0.076 4.076 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.036 0.964 43 H 0.267 0.733 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.133 0.867 47 H 0.167 0.833 48 H 0.187 0.813 49 H 0.148 0.852 50 H 0.062 0.938 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 -8.993 -3.358 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 C -0.203 4.203 4 C -0.137 4.137 5 C -0.152 4.152 6 C -0.135 4.135 7 C -0.123 4.123 8 H 0.110 0.890 9 C 0.310 3.690 10 O -0.472 6.472 11 N -0.323 5.323 12 C 0.132 3.868 13 C -0.581 4.581 14 H 0.067 0.933 15 C -0.172 4.172 16 N -0.553 5.553 17 Si 0.773 3.227 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.202 1.202 21 C 0.034 3.966 22 C -0.157 4.157 23 C -0.093 4.093 24 C -0.187 4.187 25 C -0.067 4.067 26 N -0.218 5.218 27 C -0.056 4.056 28 C -0.114 4.114 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.151 0.849 47 H 0.184 0.816 48 H 0.204 0.796 49 H 0.165 0.835 50 H 0.081 0.919 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.924 -9.275 -3.373 12.657 hybrid contribution -0.318 1.334 0.912 1.647 sum -8.242 -7.941 -2.461 11.707 Atomic orbital electron populations 1.21798 0.93058 1.02117 1.02153 1.20541 0.96260 0.94990 0.94399 1.21981 1.00914 0.95694 1.01742 1.21569 0.94250 1.00714 0.97192 1.21532 0.96691 1.00545 0.96446 1.21393 0.99687 0.98781 0.93674 1.21314 0.97633 1.01005 0.92307 0.88973 1.20992 0.81235 0.80463 0.86345 1.90518 1.56385 1.42890 1.57400 1.48230 1.10955 1.40819 1.32319 1.19175 0.88815 0.86393 0.92413 1.21641 1.23348 0.93338 1.19820 0.93297 1.25525 0.94518 1.02201 0.94964 1.70007 1.25585 1.33228 1.26494 0.85663 0.78007 0.80469 0.78519 1.19765 1.20511 1.20159 1.20165 0.99134 0.88496 0.88776 1.21256 0.95472 0.96778 1.02163 1.21736 1.00002 0.92404 0.95119 1.22462 0.97004 0.99319 0.99881 1.23348 0.91246 0.96999 0.95140 1.67716 1.40127 1.00020 1.13931 1.22692 0.93110 0.95720 0.94076 1.21322 0.91895 1.00566 0.97608 0.93032 0.91191 0.92220 0.93567 0.91287 0.93451 0.91400 0.90204 0.90629 0.92335 0.93254 0.92187 0.96301 0.94638 0.92368 0.89488 0.89958 0.84915 0.81577 0.79618 0.83469 0.91948 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.47 71.98 0.61 -2.16 16 2 C -0.06 -1.58 0.77 -52.18 -0.04 -1.62 16 3 C -0.15 -4.02 7.78 71.98 0.56 -3.46 16 4 C -0.10 -2.30 4.73 30.60 0.14 -2.16 16 5 C -0.11 -3.16 5.65 30.59 0.17 -2.98 16 6 C -0.10 -3.24 4.93 30.59 0.15 -3.09 16 7 C -0.10 -3.74 1.41 -11.52 -0.02 -3.76 16 8 H 0.09 3.87 5.01 -2.39 -0.01 3.86 16 9 C 0.52 21.47 6.81 87.65 0.60 22.07 16 10 O -0.59 -25.52 15.44 -3.02 -0.05 -25.56 16 11 N -0.59 -24.82 2.46 -830.53 -2.04 -26.86 16 12 C 0.25 11.90 4.78 85.63 0.41 12.31 16 13 C -0.54 -27.83 8.58 25.60 0.22 -27.61 16 14 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 15 C 0.03 1.49 5.46 84.66 0.46 1.95 16 16 N -0.91 -49.44 13.29 21.45 0.28 -49.15 16 17 Si 0.95 41.50 29.54 68.60 2.03 43.52 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.16 5.83 5.57 85.63 0.48 6.30 16 22 C -0.15 -5.15 5.48 -19.77 -0.11 -5.26 16 23 C -0.07 -1.97 9.86 22.47 0.22 -1.74 16 24 C -0.17 -3.98 10.11 22.36 0.23 -3.75 16 25 C 0.09 2.24 11.18 84.69 0.95 3.19 16 26 N -0.51 -16.28 10.36 -195.84 -2.03 -18.31 16 27 C 0.10 3.42 10.86 84.67 0.92 4.34 16 28 C -0.08 -2.42 3.43 30.61 0.11 -2.32 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.50 4.81 -2.38 -0.01 1.49 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.78 6.43 -2.39 -0.02 1.76 16 39 H 0.05 1.86 6.12 -2.39 -0.01 1.84 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.02 0.95 8.02 -2.39 -0.02 0.93 16 42 H 0.04 1.75 4.82 -2.39 -0.01 1.74 16 43 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 44 H 0.09 3.16 8.02 -2.39 -0.02 3.14 16 45 H 0.08 3.02 7.31 -2.38 -0.02 3.00 16 46 H 0.13 4.02 7.95 -2.91 -0.02 4.00 16 47 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 48 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 49 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 50 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 51 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -60.24 396.42 5.15 -55.08 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.90 Total: 31.03 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 6.06 Total: -9.74 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -3.79 Total: -94.33 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -60.24 5.15 -55.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179367040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.512 kcal (2) G-P(sol) polarization free energy of solvation -60.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds