Wall clock time and date at job start Tue Mar 31 2020 15:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.52999 * 109.47255 * 240.00126 * 2 1 3 5 5 C 1.53007 * 109.46762 * 299.99590 * 4 2 1 6 6 C 1.52996 * 109.47281 * 299.99845 * 5 4 2 7 7 C 1.53007 * 109.46910 * 60.00211 * 6 5 4 8 8 H 1.09005 * 109.47238 * 59.99964 * 7 6 5 9 9 C 1.50701 * 109.47029 * 179.97438 * 7 6 5 10 10 O 1.21279 * 119.99569 * 106.17086 * 9 7 6 11 11 N 1.34777 * 119.99852 * 286.16843 * 9 7 6 12 12 C 1.46500 * 120.00288 * 4.61523 * 11 9 7 13 13 C 1.50697 * 109.47064 * 264.10579 * 12 11 9 14 14 H 1.08001 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00013 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99949 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00163 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47204 * 90.00462 * 17 15 13 19 19 H 1.48502 * 109.47030 * 210.00376 * 17 15 13 20 20 H 1.48501 * 109.47377 * 330.00105 * 17 15 13 21 21 C 1.46502 * 119.99823 * 184.61749 * 11 9 7 22 22 C 1.50697 * 109.47254 * 270.00115 * 21 11 9 23 23 C 1.38666 * 120.41761 * 270.30621 * 22 21 11 24 24 C 1.38627 * 118.42270 * 180.21580 * 23 22 21 25 25 C 1.38229 * 119.16000 * 359.48300 * 24 23 22 26 26 N 1.31851 * 120.76076 * 0.24849 * 25 24 23 27 27 C 1.31881 * 121.73100 * 0.02982 * 26 25 24 28 28 C 1.53003 * 109.47251 * 119.99439 * 2 1 3 29 29 H 1.09001 * 109.47403 * 299.99741 * 1 2 3 30 30 H 1.08997 * 109.47618 * 60.00578 * 1 2 3 31 31 H 1.09010 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47073 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46528 * 299.99886 * 3 2 1 34 34 H 1.08995 * 109.47179 * 59.99633 * 3 2 1 35 35 H 1.08994 * 109.47537 * 59.99649 * 4 2 1 36 36 H 1.09005 * 109.46939 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.46851 * 60.00497 * 5 4 2 38 38 H 1.09001 * 109.46580 * 180.02562 * 5 4 2 39 39 H 1.09003 * 109.47638 * 300.00775 * 6 5 4 40 40 H 1.09002 * 109.47165 * 179.97438 * 6 5 4 41 41 H 1.09003 * 109.46896 * 24.10644 * 12 11 9 42 42 H 1.08998 * 109.46710 * 144.10398 * 12 11 9 43 43 H 0.96996 * 120.00394 * 179.97438 * 16 15 13 44 44 H 1.08993 * 109.47287 * 150.00012 * 21 11 9 45 45 H 1.09003 * 109.46717 * 30.00065 * 21 11 9 46 46 H 1.08002 * 120.78903 * 359.97282 * 23 22 21 47 47 H 1.08000 * 120.42500 * 179.75227 * 24 23 22 48 48 H 1.08001 * 119.62127 * 180.27712 * 25 24 23 49 49 H 1.08002 * 119.62136 * 180.02562 * 27 26 25 50 50 H 1.08995 * 109.47187 * 300.00568 * 28 2 1 51 51 H 1.08996 * 109.47004 * 180.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1638 -1.2491 6 6 2.0401 -2.8850 0.0000 7 6 1.5301 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2494 9 6 2.0319 -2.8744 2.4798 10 8 2.9198 -2.3831 3.1440 11 7 1.4940 -4.0559 2.8421 12 6 0.4934 -4.6983 1.9864 13 6 -0.8874 -4.3493 2.4790 14 1 -1.0076 -3.7122 3.3428 15 6 -1.9973 -4.8424 1.8263 16 7 -1.8510 -5.6177 0.7742 17 14 -3.7088 -4.4103 2.4373 18 1 -4.1745 -3.1690 1.7684 19 1 -4.6419 -5.5220 2.1229 20 1 -3.6708 -4.1966 3.9064 21 6 1.9099 -4.6976 4.0917 22 6 3.0860 -5.6013 3.8251 23 6 2.8867 -6.9287 3.4770 24 6 3.9981 -7.7242 3.2454 25 6 5.2590 -7.1689 3.3577 26 7 5.4106 -5.9008 3.6853 27 6 4.3765 -5.1161 3.9182 28 6 2.0400 -0.7211 1.2493 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 0.4401 -2.1638 -1.2492 38 1 1.8938 -2.6777 -2.1389 39 1 3.1301 -2.8849 0.0001 40 1 1.6764 -3.9125 0.0003 41 1 0.6129 -4.3476 0.9613 42 1 0.6282 -5.7795 2.0186 43 1 -2.6317 -5.9650 0.3152 44 1 1.0834 -5.2853 4.4910 45 1 2.1953 -3.9337 4.8149 46 1 1.8893 -7.3343 3.3923 47 1 3.8804 -8.7635 2.9763 48 1 6.1300 -7.7806 3.1744 49 1 4.5401 -4.0821 4.1838 50 1 1.6766 -0.2073 2.1392 51 1 3.1300 -0.7207 1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179367053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:50 Heat of formation + Delta-G solvation = -28.827481 kcal Electronic energy + Delta-G solvation = -30013.930644 eV Core-core repulsion = 26297.941914 eV Total energy + Delta-G solvation = -3715.988730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.26639 -39.67917 -38.04223 -35.25884 -33.39133 -32.77273 -32.02943 -31.33996 -30.47554 -27.55736 -27.10877 -26.33478 -25.86483 -23.51589 -23.18755 -22.66063 -21.58513 -21.01841 -18.33218 -18.07098 -16.92908 -16.63331 -16.32842 -15.77277 -15.59082 -15.11257 -14.71221 -14.51478 -14.47139 -14.10892 -13.94060 -13.51738 -13.30482 -13.17610 -12.77362 -12.66947 -12.61248 -12.38679 -12.14247 -11.82791 -11.79419 -11.71627 -11.46846 -11.29580 -11.20452 -11.11031 -10.92540 -10.69681 -10.67136 -10.57761 -10.28629 -10.08717 -9.86017 -9.77002 -9.63585 -9.51625 -9.22032 -9.02465 -8.69458 -8.50566 -7.78016 -6.23750 -4.30760 1.34509 1.55399 3.18038 3.26051 3.28135 3.39190 3.81940 4.22592 4.30261 4.70187 4.89087 4.94783 4.97493 5.06479 5.09304 5.20951 5.26213 5.34698 5.36152 5.45560 5.51738 5.64651 5.65652 5.70835 5.78251 5.84978 5.90985 5.93092 5.95020 6.02028 6.08108 6.13358 6.16928 6.19558 6.26396 6.28155 6.37090 6.38144 6.46436 6.54865 6.56833 6.58856 6.64293 6.70439 6.74554 6.91788 6.98233 7.20950 7.49032 7.70082 8.00288 8.22073 8.30700 8.74177 8.99307 9.37094 10.82615 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007832 B = 0.005623 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.231340 B = 4978.559907 C = 7458.677888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.112 4.112 7 C -0.102 4.102 8 H 0.110 0.890 9 C 0.522 3.478 10 O -0.572 6.572 11 N -0.591 5.591 12 C 0.227 3.773 13 C -0.538 4.538 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.161 3.839 22 C -0.143 4.143 23 C -0.059 4.059 24 C -0.179 4.179 25 C 0.087 3.913 26 N -0.493 5.493 27 C 0.117 3.883 28 C -0.083 4.083 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.031 0.969 43 H 0.265 0.735 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.136 0.864 47 H 0.130 0.870 48 H 0.149 0.851 49 H 0.159 0.841 50 H 0.061 0.939 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 3.179 -1.428 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.123 4.123 8 H 0.128 0.872 9 C 0.310 3.690 10 O -0.453 6.453 11 N -0.320 5.320 12 C 0.107 3.893 13 C -0.577 4.577 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.036 3.964 22 C -0.146 4.146 23 C -0.086 4.086 24 C -0.199 4.199 25 C -0.070 4.070 26 N -0.201 5.201 27 C -0.040 4.040 28 C -0.121 4.121 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.154 0.846 47 H 0.148 0.852 48 H 0.166 0.834 49 H 0.176 0.824 50 H 0.080 0.920 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.987 3.656 -1.158 8.860 hybrid contribution -2.062 -0.429 0.121 2.110 sum 5.925 3.227 -1.037 6.826 Atomic orbital electron populations 1.22005 0.94537 1.02881 1.01045 1.20543 0.95835 0.94691 0.95423 1.21839 1.00724 0.95704 1.01298 1.21594 1.00186 0.95728 0.96843 1.21542 1.01656 0.94996 0.97299 1.21643 1.00053 1.00233 0.93060 1.21286 1.03417 0.94849 0.92786 0.87206 1.20617 0.81317 0.80702 0.86325 1.90554 1.31448 1.67239 1.56068 1.48246 1.41183 1.20365 1.22214 1.19731 0.85318 0.93557 0.90665 1.21482 0.90504 1.31378 1.14304 0.92106 1.24905 0.99218 0.94700 0.94760 1.69912 1.30559 1.32918 1.19361 0.86573 0.83868 0.78185 0.79340 1.20430 1.21115 1.19826 1.20114 0.93473 0.94938 0.87832 1.21450 0.97179 0.95366 1.00650 1.21635 0.99655 0.93218 0.94087 1.22092 0.93779 1.01177 1.02871 1.22685 0.96604 0.91743 0.95961 1.67702 1.35167 1.05374 1.11889 1.22855 0.87548 0.99452 0.94133 1.21355 1.00772 0.93404 0.96565 0.92920 0.93233 0.91171 0.92912 0.93027 0.92813 0.92434 0.92340 0.91027 0.92253 0.92580 0.90004 0.92620 0.95125 0.92525 0.89244 0.89983 0.84570 0.85164 0.83379 0.82413 0.92035 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 7.78 37.16 0.29 -1.73 16 2 C -0.06 -0.86 0.77 -154.51 -0.12 -0.98 16 3 C -0.14 -1.59 8.47 37.16 0.31 -1.28 16 4 C -0.11 -1.35 4.73 -26.73 -0.13 -1.48 16 5 C -0.12 -1.68 5.65 -26.73 -0.15 -1.83 16 6 C -0.11 -1.86 4.87 -26.73 -0.13 -1.99 16 7 C -0.10 -1.81 1.42 -91.77 -0.13 -1.95 16 8 H 0.11 2.13 5.77 -51.93 -0.30 1.83 16 9 C 0.52 10.39 6.91 -10.98 -0.08 10.31 16 10 O -0.57 -12.13 14.90 5.56 0.08 -12.05 16 11 N -0.59 -11.78 2.44 -176.44 -0.43 -12.21 16 12 C 0.23 5.03 4.72 -5.20 -0.02 5.01 16 13 C -0.54 -13.16 9.18 -34.44 -0.32 -13.48 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.25 13.29 55.43 0.74 -22.52 16 17 Si 0.89 19.77 29.54 -169.99 -5.02 14.74 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.16 2.87 5.54 -5.19 -0.03 2.84 16 22 C -0.14 -2.41 5.48 -104.48 -0.57 -2.98 16 23 C -0.06 -0.92 9.86 -39.28 -0.39 -1.30 16 24 C -0.18 -2.42 10.11 -39.44 -0.40 -2.82 16 25 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 26 N -0.49 -8.23 10.36 -13.25 -0.14 -8.37 16 27 C 0.12 2.02 10.77 -17.55 -0.19 1.83 16 28 C -0.08 -1.31 3.41 -26.73 -0.09 -1.40 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.08 4.81 -51.92 -0.25 0.83 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.51 5.45 -51.93 -0.28 1.23 16 41 H 0.06 1.27 3.99 -51.93 -0.21 1.06 16 42 H 0.03 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.09 1.56 8.03 -51.93 -0.42 1.14 16 45 H 0.08 1.45 7.44 -51.93 -0.39 1.06 16 46 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 47 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 49 H 0.16 2.79 7.42 -52.49 -0.39 2.40 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -27.31 395.28 -9.69 -37.00 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.44 Total: 8.06 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -2.43 Total: -10.62 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.17 Total: -43.10 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.31 -9.69 -37.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179367053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.170 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds