Wall clock time and date at job start Tue Mar 31 2020 15:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.52999 * 109.47255 * 240.00126 * 2 1 3 5 5 C 1.53007 * 109.46762 * 299.99590 * 4 2 1 6 6 C 1.52996 * 109.47281 * 299.99845 * 5 4 2 7 7 C 1.53007 * 109.46910 * 60.00211 * 6 5 4 8 8 H 1.09005 * 109.47238 * 59.99964 * 7 6 5 9 9 C 1.50701 * 109.47029 * 179.97438 * 7 6 5 10 10 O 1.21279 * 119.99569 * 106.17086 * 9 7 6 11 11 N 1.34777 * 119.99852 * 286.16843 * 9 7 6 12 12 C 1.46500 * 120.00288 * 4.61523 * 11 9 7 13 13 C 1.50697 * 109.47064 * 264.10579 * 12 11 9 14 14 H 1.08001 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00013 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99949 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00163 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47204 * 90.00462 * 17 15 13 19 19 H 1.48502 * 109.47030 * 210.00376 * 17 15 13 20 20 H 1.48501 * 109.47377 * 330.00105 * 17 15 13 21 21 C 1.46502 * 119.99823 * 184.61749 * 11 9 7 22 22 C 1.50697 * 109.47254 * 270.00115 * 21 11 9 23 23 C 1.38666 * 120.41761 * 270.30621 * 22 21 11 24 24 C 1.38627 * 118.42270 * 180.21580 * 23 22 21 25 25 C 1.38229 * 119.16000 * 359.48300 * 24 23 22 26 26 N 1.31851 * 120.76076 * 0.24849 * 25 24 23 27 27 C 1.31881 * 121.73100 * 0.02982 * 26 25 24 28 28 C 1.53003 * 109.47251 * 119.99439 * 2 1 3 29 29 H 1.09001 * 109.47403 * 299.99741 * 1 2 3 30 30 H 1.08997 * 109.47618 * 60.00578 * 1 2 3 31 31 H 1.09010 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47073 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46528 * 299.99886 * 3 2 1 34 34 H 1.08995 * 109.47179 * 59.99633 * 3 2 1 35 35 H 1.08994 * 109.47537 * 59.99649 * 4 2 1 36 36 H 1.09005 * 109.46939 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.46851 * 60.00497 * 5 4 2 38 38 H 1.09001 * 109.46580 * 180.02562 * 5 4 2 39 39 H 1.09003 * 109.47638 * 300.00775 * 6 5 4 40 40 H 1.09002 * 109.47165 * 179.97438 * 6 5 4 41 41 H 1.09003 * 109.46896 * 24.10644 * 12 11 9 42 42 H 1.08998 * 109.46710 * 144.10398 * 12 11 9 43 43 H 0.96996 * 120.00394 * 179.97438 * 16 15 13 44 44 H 1.08993 * 109.47287 * 150.00012 * 21 11 9 45 45 H 1.09003 * 109.46717 * 30.00065 * 21 11 9 46 46 H 1.08002 * 120.78903 * 359.97282 * 23 22 21 47 47 H 1.08000 * 120.42500 * 179.75227 * 24 23 22 48 48 H 1.08001 * 119.62127 * 180.27712 * 25 24 23 49 49 H 1.08002 * 119.62136 * 180.02562 * 27 26 25 50 50 H 1.08995 * 109.47187 * 300.00568 * 28 2 1 51 51 H 1.08996 * 109.47004 * 180.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1638 -1.2491 6 6 2.0401 -2.8850 0.0000 7 6 1.5301 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2494 9 6 2.0319 -2.8744 2.4798 10 8 2.9198 -2.3831 3.1440 11 7 1.4940 -4.0559 2.8421 12 6 0.4934 -4.6983 1.9864 13 6 -0.8874 -4.3493 2.4790 14 1 -1.0076 -3.7122 3.3428 15 6 -1.9973 -4.8424 1.8263 16 7 -1.8510 -5.6177 0.7742 17 14 -3.7088 -4.4103 2.4373 18 1 -4.1745 -3.1690 1.7684 19 1 -4.6419 -5.5220 2.1229 20 1 -3.6708 -4.1966 3.9064 21 6 1.9099 -4.6976 4.0917 22 6 3.0860 -5.6013 3.8251 23 6 2.8867 -6.9287 3.4770 24 6 3.9981 -7.7242 3.2454 25 6 5.2590 -7.1689 3.3577 26 7 5.4106 -5.9008 3.6853 27 6 4.3765 -5.1161 3.9182 28 6 2.0400 -0.7211 1.2493 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 0.4401 -2.1638 -1.2492 38 1 1.8938 -2.6777 -2.1389 39 1 3.1301 -2.8849 0.0001 40 1 1.6764 -3.9125 0.0003 41 1 0.6129 -4.3476 0.9613 42 1 0.6282 -5.7795 2.0186 43 1 -2.6317 -5.9650 0.3152 44 1 1.0834 -5.2853 4.4910 45 1 2.1953 -3.9337 4.8149 46 1 1.8893 -7.3343 3.3923 47 1 3.8804 -8.7635 2.9763 48 1 6.1300 -7.7806 3.1744 49 1 4.5401 -4.0821 4.1838 50 1 1.6766 -0.2073 2.1392 51 1 3.1300 -0.7207 1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179367053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:47 Heat of formation + Delta-G solvation = -40.438448 kcal Electronic energy + Delta-G solvation = -30014.434133 eV Core-core repulsion = 26297.941914 eV Total energy + Delta-G solvation = -3716.492220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.68141 -40.93099 -39.40635 -36.91733 -34.89138 -34.33782 -33.37724 -32.62522 -31.75434 -29.31443 -28.15250 -27.73384 -27.09371 -25.16766 -24.45692 -24.12145 -22.84478 -22.30984 -19.85591 -19.31817 -18.65103 -18.02105 -17.78511 -17.27377 -17.00448 -16.50481 -16.28725 -15.97883 -15.72360 -15.42448 -15.13030 -14.84782 -14.56452 -14.42959 -14.25086 -14.03699 -13.95272 -13.79255 -13.52177 -13.39799 -13.10137 -12.92364 -12.85136 -12.80216 -12.56213 -12.50771 -12.36232 -12.26465 -12.00279 -11.86049 -11.82637 -11.66330 -11.31709 -11.01787 -10.91613 -10.80733 -10.60027 -10.50222 -10.37884 -9.92689 -9.45714 -8.18007 -6.30941 0.12398 0.32092 1.40732 1.44144 1.51755 1.77372 2.30880 2.45644 2.94651 3.12469 3.52100 3.61232 3.74303 3.78492 3.88189 3.90242 4.06198 4.10199 4.14310 4.21472 4.28086 4.41140 4.46496 4.49149 4.59310 4.65527 4.68244 4.70748 4.74677 4.85590 4.87257 4.89170 4.93549 5.00891 5.07420 5.10428 5.12337 5.17499 5.21180 5.25869 5.28355 5.36071 5.39499 5.43274 5.47694 5.53832 5.69096 5.70954 5.77550 5.83608 6.09018 6.58920 6.83163 6.99980 7.31904 7.43483 8.87156 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007832 B = 0.005623 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.231340 B = 4978.559907 C = 7458.677888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.134 4.134 4 C -0.101 4.101 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.097 4.097 8 H 0.091 0.909 9 C 0.514 3.486 10 O -0.587 6.587 11 N -0.593 5.593 12 C 0.243 3.757 13 C -0.544 4.544 14 H 0.050 0.950 15 C 0.029 3.971 16 N -0.914 5.914 17 Si 0.947 3.053 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.161 3.839 22 C -0.154 4.154 23 C -0.069 4.069 24 C -0.167 4.167 25 C 0.088 3.912 26 N -0.512 5.512 27 C 0.105 3.895 28 C -0.076 4.076 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.016 0.984 43 H 0.267 0.733 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.138 0.862 47 H 0.167 0.833 48 H 0.187 0.813 49 H 0.144 0.856 50 H 0.049 0.951 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 3.188 -2.528 8.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.143 4.143 7 C -0.118 4.118 8 H 0.109 0.891 9 C 0.303 3.697 10 O -0.470 6.470 11 N -0.322 5.322 12 C 0.123 3.877 13 C -0.583 4.583 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.553 5.553 17 Si 0.773 3.227 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.198 1.198 21 C 0.037 3.963 22 C -0.157 4.157 23 C -0.096 4.096 24 C -0.186 4.186 25 C -0.069 4.069 26 N -0.221 5.221 27 C -0.052 4.052 28 C -0.114 4.114 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.156 0.844 47 H 0.185 0.815 48 H 0.204 0.796 49 H 0.161 0.839 50 H 0.068 0.932 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.362 3.672 -2.244 9.404 hybrid contribution -2.122 -0.523 0.504 2.242 sum 6.240 3.149 -1.741 7.203 Atomic orbital electron populations 1.21976 0.94811 1.01602 1.01874 1.20540 0.95545 0.95813 0.94282 1.21800 1.01024 0.94116 1.02216 1.21580 1.00543 0.94407 0.97304 1.21521 1.00958 0.96222 0.96406 1.21557 0.99849 0.99108 0.93795 1.21260 1.02107 0.96115 0.92316 0.89102 1.21078 0.81093 0.80640 0.86867 1.90537 1.32149 1.67541 1.56733 1.48238 1.40766 1.20569 1.22583 1.19399 0.84985 0.92592 0.90751 1.21633 0.91738 1.31017 1.13894 0.93150 1.25502 1.02148 0.94629 0.94870 1.69991 1.31404 1.33733 1.20201 0.85721 0.80237 0.78008 0.78732 1.20028 1.20753 1.19822 1.20139 0.94116 0.95063 0.86944 1.21273 0.96397 0.95950 1.02111 1.21788 1.00671 0.92886 0.94240 1.22466 0.92716 1.02564 1.00884 1.23348 0.98275 0.90996 0.94262 1.67707 1.34999 1.06726 1.12651 1.22649 0.87966 0.99223 0.95354 1.21313 1.00182 0.92172 0.97741 0.93214 0.91277 0.93470 0.92443 0.91173 0.92878 0.90176 0.91707 0.92113 0.90796 0.92574 0.92297 0.93110 0.96565 0.92403 0.89303 0.90333 0.84446 0.81523 0.79625 0.83881 0.93179 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 7.78 71.98 0.56 -3.29 16 2 C -0.06 -1.56 0.77 -52.18 -0.04 -1.60 16 3 C -0.13 -2.79 8.47 71.98 0.61 -2.18 16 4 C -0.10 -2.37 4.73 30.60 0.14 -2.23 16 5 C -0.11 -3.17 5.65 30.60 0.17 -3.00 16 6 C -0.11 -3.57 4.87 30.60 0.15 -3.42 16 7 C -0.10 -3.55 1.42 -11.54 -0.02 -3.57 16 8 H 0.09 3.69 5.77 -2.38 -0.01 3.68 16 9 C 0.51 21.31 6.91 87.66 0.61 21.91 16 10 O -0.59 -25.88 14.90 -3.03 -0.05 -25.92 16 11 N -0.59 -24.66 2.44 -830.51 -2.03 -26.69 16 12 C 0.24 11.19 4.72 85.63 0.40 11.59 16 13 C -0.54 -27.28 9.18 25.60 0.24 -27.05 16 14 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 15 C 0.03 1.49 5.46 84.65 0.46 1.95 16 16 N -0.91 -48.24 13.29 21.45 0.28 -47.95 16 17 Si 0.95 40.63 29.54 68.60 2.03 42.65 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 C 0.16 6.01 5.54 85.63 0.47 6.49 16 22 C -0.15 -5.31 5.48 -19.77 -0.11 -5.41 16 23 C -0.07 -2.11 9.86 22.47 0.22 -1.89 16 24 C -0.17 -4.12 10.11 22.36 0.23 -3.90 16 25 C 0.09 2.28 11.18 84.69 0.95 3.22 16 26 N -0.51 -16.79 10.36 -195.84 -2.03 -18.82 16 27 C 0.10 3.68 10.77 84.67 0.91 4.60 16 28 C -0.08 -2.42 3.41 30.60 0.10 -2.32 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.46 4.81 -2.38 -0.01 1.45 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.06 1.84 6.43 -2.39 -0.02 1.82 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 2.26 5.45 -2.39 -0.01 2.24 16 41 H 0.05 2.42 3.99 -2.39 -0.01 2.41 16 42 H 0.02 0.79 8.11 -2.39 -0.02 0.77 16 43 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 44 H 0.09 3.25 8.03 -2.39 -0.02 3.23 16 45 H 0.08 2.93 7.44 -2.39 -0.02 2.92 16 46 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 47 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 48 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 49 H 0.14 5.34 7.42 -2.91 -0.02 5.32 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.06 1.95 7.95 -2.39 -0.02 1.93 16 Total: -1.00 -59.19 395.28 5.18 -54.01 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.90 Total: 32.79 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 6.06 Total: -10.08 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.77 Total: -93.46 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -59.19 5.18 -54.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179367053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.576 kcal (2) G-P(sol) polarization free energy of solvation -59.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds