Wall clock time and date at job start Tue Mar 31 2020 15:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.87088 * 2 1 4 4 C 1.50698 * 109.47063 * 184.04547 * 3 2 1 5 5 C 1.38242 * 119.99547 * 265.04379 * 4 3 2 6 6 C 1.38233 * 120.00008 * 180.32551 * 5 4 3 7 7 C 1.38236 * 119.99873 * 359.95269 * 6 5 4 8 8 C 1.38238 * 119.99875 * 0.02562 * 7 6 5 9 9 C 1.38231 * 120.00199 * 85.32826 * 4 3 2 10 10 C 1.54322 * 109.88749 * 121.01320 * 2 1 3 11 11 C 1.55152 * 102.94227 * 97.38181 * 10 2 1 12 12 C 1.54908 * 101.58254 * 35.50119 * 11 10 2 13 13 N 1.47021 * 109.88463 * 238.98462 * 2 1 3 14 14 C 1.34780 * 125.64603 * 59.31761 * 13 2 1 15 15 O 1.21583 * 120.00028 * 4.97690 * 14 13 2 16 16 N 1.34776 * 119.99404 * 184.97401 * 14 13 2 17 17 C 1.46506 * 119.99611 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47240 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47281 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47291 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99494 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00281 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99669 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00179 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47093 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47245 * 119.99668 * 24 22 20 27 27 H 1.48501 * 109.46803 * 239.99490 * 24 22 20 28 28 H 1.08998 * 109.47398 * 59.30293 * 1 2 3 29 29 H 1.09002 * 109.46378 * 179.30480 * 1 2 3 30 30 H 1.08998 * 109.47494 * 299.29655 * 1 2 3 31 31 H 1.08998 * 109.46975 * 64.03857 * 3 2 1 32 32 H 1.09008 * 109.46747 * 304.04372 * 3 2 1 33 33 H 1.08002 * 119.99779 * 0.28229 * 5 4 3 34 34 H 1.07996 * 119.99857 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.99971 * 179.97438 * 7 6 5 36 36 H 1.08001 * 119.99658 * 179.97438 * 8 7 6 37 37 H 1.08003 * 120.00081 * 359.71255 * 9 4 3 38 38 H 1.09004 * 110.72217 * 215.74869 * 10 2 1 39 39 H 1.09003 * 110.71766 * 338.84281 * 10 2 1 40 40 H 1.08998 * 111.00271 * 153.58128 * 11 10 2 41 41 H 1.08999 * 111.00369 * 277.42982 * 11 10 2 42 42 H 1.09004 * 110.36228 * 81.82603 * 12 11 10 43 43 H 1.09002 * 110.36855 * 204.04177 * 12 11 10 44 44 H 0.96996 * 120.00755 * 0.02562 * 16 14 13 45 45 H 1.09001 * 109.47177 * 300.00538 * 17 16 14 46 46 H 1.08996 * 109.47128 * 60.00550 * 17 16 14 47 47 H 1.09001 * 109.47060 * 300.00102 * 18 17 16 48 48 H 1.08997 * 109.47422 * 59.99614 * 18 17 16 49 49 H 1.08992 * 109.47240 * 299.99794 * 19 18 17 50 50 H 1.09005 * 109.46868 * 60.00032 * 19 18 17 51 51 H 0.97001 * 119.99337 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4390 0.0000 4 6 3.5537 1.4296 -0.1002 5 6 4.3232 1.5002 1.0460 6 6 5.7025 1.4984 0.9538 7 6 6.3122 1.4251 -0.2846 8 6 5.5427 1.3542 -1.4308 9 6 4.1634 1.3565 -1.3386 10 6 2.0550 -0.7477 1.2437 11 6 2.3559 -2.1672 0.6945 12 6 2.8619 -1.8471 -0.7342 13 7 2.0301 -0.7124 -1.1849 14 6 1.7717 -0.3837 -2.4662 15 8 1.1457 0.6273 -2.7201 16 7 2.2072 -1.1756 -3.4659 17 6 1.9269 -0.8181 -4.8588 18 6 2.5263 -1.8758 -5.7875 19 6 2.2330 -1.5028 -7.2420 20 6 2.8240 -2.5444 -8.1568 21 1 3.3553 -3.3882 -7.7421 22 6 2.6865 -2.4200 -9.5230 23 7 2.0390 -1.3925 -10.0278 24 14 3.4185 -3.7115 -10.6569 25 1 4.0911 -4.7581 -9.8461 26 1 2.3376 -4.3299 -11.4659 27 1 4.4092 -3.0728 -11.5601 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3632 -1.0277 -0.0125 30 1 -0.3634 0.5028 0.8962 31 1 1.7505 1.9335 0.9239 32 1 1.6325 1.9762 -0.8516 33 1 3.8467 1.5573 2.0136 34 1 6.3036 1.5539 1.8493 35 1 7.3898 1.4242 -0.3568 36 1 6.0191 1.2973 -2.3984 37 1 3.5622 1.3014 -2.2342 38 1 2.9643 -0.2791 1.6202 39 1 1.2920 -0.7858 2.0213 40 1 3.1313 -2.6575 1.2830 41 1 1.4506 -2.7734 0.6617 42 1 3.9136 -1.5616 -0.7090 43 1 2.7184 -2.7067 -1.3889 44 1 2.7063 -1.9823 -3.2634 45 1 0.8487 -0.7699 -5.0115 46 1 2.3690 0.1532 -5.0806 47 1 3.6045 -1.9244 -5.6348 48 1 2.0840 -2.8470 -5.5656 49 1 1.1549 -1.4546 -7.3944 50 1 2.6752 -0.5315 -7.4642 51 1 1.9419 -1.3053 -10.9890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184857169.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:02 Heat of formation + Delta-G solvation = -20.055200 kcal Electronic energy + Delta-G solvation = -29078.066557 eV Core-core repulsion = 25362.458221 eV Total energy + Delta-G solvation = -3715.608336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96050 -39.06446 -37.86175 -35.31091 -33.82030 -33.02134 -31.91934 -31.08801 -30.90564 -30.55432 -26.68644 -26.59276 -25.72920 -23.45924 -22.75594 -22.33283 -21.46926 -20.79188 -20.57706 -18.88894 -17.50978 -16.93315 -16.41957 -16.15480 -15.65698 -15.22133 -15.13064 -15.10595 -14.48724 -14.25350 -14.17291 -13.89588 -13.68211 -13.40323 -13.32809 -13.04080 -12.77016 -12.55281 -12.28498 -12.25083 -12.16516 -11.89793 -11.74799 -11.65299 -11.42423 -11.18937 -10.98941 -10.90367 -10.86888 -10.69366 -10.67705 -10.55301 -9.88709 -9.84583 -9.41164 -9.09963 -8.98704 -8.90662 -8.72156 -8.37273 -8.36119 -6.01135 -4.04048 1.28164 1.33607 2.70779 3.30201 3.37703 3.40528 3.41228 3.70300 4.06652 4.32742 4.41387 4.45987 4.61222 4.72748 4.80153 4.91548 4.95626 5.04467 5.05776 5.22358 5.28925 5.34753 5.38520 5.41962 5.45892 5.54973 5.60463 5.63210 5.66252 5.70502 5.81364 5.84017 5.85433 5.91720 6.00102 6.09042 6.17844 6.20855 6.36292 6.39404 6.47688 6.57821 6.64364 6.66852 6.89029 6.95134 7.04912 7.22314 7.65152 7.77968 7.98067 8.17661 8.39165 8.82803 9.02901 9.60131 11.10203 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002655 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.237343 B =10545.289275 C =11300.636209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.192 3.808 3 C -0.092 4.092 4 C -0.066 4.066 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.118 4.118 9 C -0.103 4.103 10 C -0.130 4.130 11 C -0.129 4.129 12 C 0.101 3.899 13 N -0.628 5.628 14 C 0.722 3.278 15 O -0.588 6.588 16 N -0.742 5.742 17 C 0.136 3.864 18 C -0.120 4.120 19 C 0.024 3.976 20 C -0.521 4.521 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.392 0.608 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 2.294 28.488 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 C -0.130 4.130 4 C -0.066 4.066 5 C -0.142 4.142 6 C -0.141 4.141 7 C -0.146 4.146 8 C -0.136 4.136 9 C -0.121 4.121 10 C -0.168 4.168 11 C -0.167 4.167 12 C -0.022 4.022 13 N -0.366 5.366 14 C 0.424 3.576 15 O -0.467 6.467 16 N -0.396 5.396 17 C 0.013 3.987 18 C -0.158 4.158 19 C -0.013 4.013 20 C -0.559 4.559 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.720 3.280 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.226 0.774 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.135 3.149 27.995 28.345 hybrid contribution 0.745 -1.138 -0.740 1.548 sum 3.880 2.011 27.255 27.603 Atomic orbital electron populations 1.22167 0.94048 1.02299 1.03027 1.20653 0.93703 0.90951 0.84055 1.21067 0.91436 0.96759 1.03784 1.19753 0.95337 0.98524 0.93000 1.21006 0.93745 1.01736 0.97678 1.21059 0.94683 1.00979 0.97429 1.21105 0.99627 1.01125 0.92706 1.21211 0.94036 0.99834 0.98536 1.21195 0.94551 0.98639 0.97692 1.22861 1.02240 0.95420 0.96283 1.22695 1.01779 0.96946 0.95266 1.22274 0.95132 0.89170 0.95644 1.47682 1.53697 1.31680 1.03585 1.15458 0.79811 0.83191 0.79134 1.90889 1.46503 1.26846 1.82424 1.45449 1.60470 1.27361 1.06337 1.21484 1.00606 0.99303 0.77291 1.21879 0.99507 0.96704 0.97680 1.19024 0.97328 0.97103 0.87870 1.21241 1.35089 1.08406 0.91189 0.92637 1.25030 0.95374 0.95688 0.98397 1.69982 1.41844 1.29250 1.12184 0.86537 0.78930 0.81695 0.80831 1.19767 1.21005 1.21010 0.90702 0.92496 0.91989 0.90623 0.88953 0.86410 0.86503 0.86491 0.86260 0.86076 0.89829 0.90122 0.90093 0.90661 0.91583 0.91161 0.77437 0.92040 0.92074 0.92858 0.92869 0.96272 0.96275 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.36 37.16 0.31 -1.30 16 2 C 0.19 1.92 0.53 -130.84 -0.07 1.85 16 3 C -0.09 -0.99 4.31 -27.88 -0.12 -1.11 16 4 C -0.07 -0.72 4.46 -104.62 -0.47 -1.19 16 5 C -0.12 -1.13 7.97 -39.58 -0.32 -1.45 16 6 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 7 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 8 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 9 C -0.10 -1.30 8.67 -39.59 -0.34 -1.65 16 10 C -0.13 -0.94 5.84 -24.90 -0.15 -1.09 16 11 C -0.13 -0.89 7.08 -24.59 -0.17 -1.07 16 12 C 0.10 0.92 6.70 -2.36 -0.02 0.90 16 13 N -0.63 -7.31 1.79 -161.19 -0.29 -7.60 16 14 C 0.72 11.06 6.18 -86.92 -0.54 10.52 16 15 O -0.59 -10.99 13.77 5.29 0.07 -10.92 16 16 N -0.74 -11.16 5.52 -65.22 -0.36 -11.52 16 17 C 0.14 2.46 5.67 -4.04 -0.02 2.43 16 18 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 19 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 20 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 24 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.07 0.99 6.90 -51.93 -0.36 0.63 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 32 H 0.09 1.26 6.83 -51.92 -0.35 0.91 16 33 H 0.12 0.83 7.65 -52.49 -0.40 0.43 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.12 1.84 6.17 -52.48 -0.32 1.52 16 38 H 0.08 0.60 5.15 -51.93 -0.27 0.33 16 39 H 0.08 0.47 7.83 -51.93 -0.41 0.07 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.60 7.13 -51.93 -0.37 0.23 16 44 H 0.39 5.03 6.89 -40.82 -0.28 4.75 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -32.29 398.34 -11.28 -43.57 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.64 Total: 3.59 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -3.78 Total: -13.48 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.09 Total: -45.31 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.29 -11.28 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184857169.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.516 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds