Wall clock time and date at job start Tue Mar 31 2020 15:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.87088 * 2 1 4 4 C 1.50698 * 109.47063 * 184.04547 * 3 2 1 5 5 C 1.38242 * 119.99547 * 265.04379 * 4 3 2 6 6 C 1.38233 * 120.00008 * 180.32551 * 5 4 3 7 7 C 1.38236 * 119.99873 * 359.95269 * 6 5 4 8 8 C 1.38238 * 119.99875 * 0.02562 * 7 6 5 9 9 C 1.38231 * 120.00199 * 85.32826 * 4 3 2 10 10 C 1.54322 * 109.88749 * 121.01320 * 2 1 3 11 11 C 1.55152 * 102.94227 * 97.38181 * 10 2 1 12 12 C 1.54908 * 101.58254 * 35.50119 * 11 10 2 13 13 N 1.47021 * 109.88463 * 238.98462 * 2 1 3 14 14 C 1.34780 * 125.64603 * 59.31761 * 13 2 1 15 15 O 1.21583 * 120.00028 * 4.97690 * 14 13 2 16 16 N 1.34776 * 119.99404 * 184.97401 * 14 13 2 17 17 C 1.46506 * 119.99611 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47240 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47281 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47291 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99494 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00281 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99669 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00179 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47093 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47245 * 119.99668 * 24 22 20 27 27 H 1.48501 * 109.46803 * 239.99490 * 24 22 20 28 28 H 1.08998 * 109.47398 * 59.30293 * 1 2 3 29 29 H 1.09002 * 109.46378 * 179.30480 * 1 2 3 30 30 H 1.08998 * 109.47494 * 299.29655 * 1 2 3 31 31 H 1.08998 * 109.46975 * 64.03857 * 3 2 1 32 32 H 1.09008 * 109.46747 * 304.04372 * 3 2 1 33 33 H 1.08002 * 119.99779 * 0.28229 * 5 4 3 34 34 H 1.07996 * 119.99857 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.99971 * 179.97438 * 7 6 5 36 36 H 1.08001 * 119.99658 * 179.97438 * 8 7 6 37 37 H 1.08003 * 120.00081 * 359.71255 * 9 4 3 38 38 H 1.09004 * 110.72217 * 215.74869 * 10 2 1 39 39 H 1.09003 * 110.71766 * 338.84281 * 10 2 1 40 40 H 1.08998 * 111.00271 * 153.58128 * 11 10 2 41 41 H 1.08999 * 111.00369 * 277.42982 * 11 10 2 42 42 H 1.09004 * 110.36228 * 81.82603 * 12 11 10 43 43 H 1.09002 * 110.36855 * 204.04177 * 12 11 10 44 44 H 0.96996 * 120.00755 * 0.02562 * 16 14 13 45 45 H 1.09001 * 109.47177 * 300.00538 * 17 16 14 46 46 H 1.08996 * 109.47128 * 60.00550 * 17 16 14 47 47 H 1.09001 * 109.47060 * 300.00102 * 18 17 16 48 48 H 1.08997 * 109.47422 * 59.99614 * 18 17 16 49 49 H 1.08992 * 109.47240 * 299.99794 * 19 18 17 50 50 H 1.09005 * 109.46868 * 60.00032 * 19 18 17 51 51 H 0.97001 * 119.99337 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4390 0.0000 4 6 3.5537 1.4296 -0.1002 5 6 4.3232 1.5002 1.0460 6 6 5.7025 1.4984 0.9538 7 6 6.3122 1.4251 -0.2846 8 6 5.5427 1.3542 -1.4308 9 6 4.1634 1.3565 -1.3386 10 6 2.0550 -0.7477 1.2437 11 6 2.3559 -2.1672 0.6945 12 6 2.8619 -1.8471 -0.7342 13 7 2.0301 -0.7124 -1.1849 14 6 1.7717 -0.3837 -2.4662 15 8 1.1457 0.6273 -2.7201 16 7 2.2072 -1.1756 -3.4659 17 6 1.9269 -0.8181 -4.8588 18 6 2.5263 -1.8758 -5.7875 19 6 2.2330 -1.5028 -7.2420 20 6 2.8240 -2.5444 -8.1568 21 1 3.3553 -3.3882 -7.7421 22 6 2.6865 -2.4200 -9.5230 23 7 2.0390 -1.3925 -10.0278 24 14 3.4185 -3.7115 -10.6569 25 1 4.0911 -4.7581 -9.8461 26 1 2.3376 -4.3299 -11.4659 27 1 4.4092 -3.0728 -11.5601 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3632 -1.0277 -0.0125 30 1 -0.3634 0.5028 0.8962 31 1 1.7505 1.9335 0.9239 32 1 1.6325 1.9762 -0.8516 33 1 3.8467 1.5573 2.0136 34 1 6.3036 1.5539 1.8493 35 1 7.3898 1.4242 -0.3568 36 1 6.0191 1.2973 -2.3984 37 1 3.5622 1.3014 -2.2342 38 1 2.9643 -0.2791 1.6202 39 1 1.2920 -0.7858 2.0213 40 1 3.1313 -2.6575 1.2830 41 1 1.4506 -2.7734 0.6617 42 1 3.9136 -1.5616 -0.7090 43 1 2.7184 -2.7067 -1.3889 44 1 2.7063 -1.9823 -3.2634 45 1 0.8487 -0.7699 -5.0115 46 1 2.3690 0.1532 -5.0806 47 1 3.6045 -1.9244 -5.6348 48 1 2.0840 -2.8470 -5.5656 49 1 1.1549 -1.4546 -7.3944 50 1 2.6752 -0.5315 -7.4642 51 1 1.9419 -1.3053 -10.9890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184857169.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:01 Heat of formation + Delta-G solvation = -37.291669 kcal Electronic energy + Delta-G solvation = -29078.813986 eV Core-core repulsion = 25362.458221 eV Total energy + Delta-G solvation = -3716.355765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89883 -40.02603 -38.83118 -36.88847 -35.31874 -34.34574 -33.15652 -32.18505 -31.75024 -31.62222 -28.46913 -27.45885 -26.50157 -25.15246 -23.58980 -23.33577 -22.33253 -22.23859 -21.70533 -20.07926 -18.60003 -18.40087 -17.76878 -17.05986 -16.88628 -16.53325 -16.30578 -16.02413 -15.98601 -15.56438 -15.37251 -14.80732 -14.44828 -14.37188 -14.22148 -14.18389 -13.95727 -13.75392 -13.55838 -13.46351 -13.28474 -13.00498 -12.95629 -12.78195 -12.65498 -12.57682 -12.34612 -12.07549 -11.87007 -11.79722 -11.69512 -11.67694 -11.54777 -11.35263 -11.22896 -10.97098 -10.57748 -10.19091 -9.77586 -9.63199 -9.34279 -8.20876 -6.32635 0.49332 0.52895 1.40439 1.40867 1.54113 1.63486 2.19644 2.40672 2.90501 3.03391 3.12832 3.62597 3.67845 3.87061 4.01260 4.09229 4.13646 4.17746 4.19147 4.23471 4.29686 4.36202 4.44300 4.52182 4.55979 4.65870 4.68124 4.71623 4.82525 4.89486 4.91983 4.94403 4.98098 5.04377 5.05982 5.12782 5.14733 5.18986 5.24925 5.28866 5.40760 5.46281 5.54896 5.56166 5.62562 5.67540 5.67955 5.82043 5.83362 6.13645 6.17313 6.20951 6.84376 7.04510 7.37017 7.63129 8.91605 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002655 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.237343 B =10545.289275 C =11300.636209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.183 3.817 3 C -0.089 4.089 4 C -0.072 4.072 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.129 4.129 8 C -0.135 4.135 9 C -0.126 4.126 10 C -0.120 4.120 11 C -0.120 4.120 12 C 0.092 3.908 13 N -0.621 5.621 14 C 0.718 3.282 15 O -0.629 6.629 16 N -0.735 5.735 17 C 0.154 3.846 18 C -0.098 4.098 19 C 0.026 3.974 20 C -0.540 4.540 21 H 0.066 0.934 22 C -0.004 4.004 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.405 0.595 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.065 0.935 48 H 0.066 0.934 49 H -0.008 1.008 50 H -0.009 1.009 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 0.216 32.153 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.127 4.127 4 C -0.072 4.072 5 C -0.134 4.134 6 C -0.135 4.135 7 C -0.147 4.147 8 C -0.153 4.153 9 C -0.144 4.144 10 C -0.158 4.158 11 C -0.157 4.157 12 C -0.030 4.030 13 N -0.358 5.358 14 C 0.421 3.579 15 O -0.511 6.511 16 N -0.391 5.391 17 C 0.029 3.971 18 C -0.136 4.136 19 C -0.012 4.012 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.201 4.201 23 N -0.576 5.576 24 Si 0.793 3.207 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.241 0.759 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.010 0.990 50 H 0.009 0.991 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.929 1.035 31.719 32.116 hybrid contribution 0.195 -0.409 -1.837 1.892 sum 5.124 0.626 29.882 30.325 Atomic orbital electron populations 1.22127 0.94390 1.02169 1.02408 1.20947 0.93559 0.90969 0.84709 1.21016 0.91441 0.97126 1.03163 1.19784 0.95430 0.98916 0.93031 1.21296 0.93893 1.00224 0.97982 1.21451 0.94897 0.99110 0.98034 1.21360 1.00555 1.00380 0.92441 1.21258 0.93745 1.00946 0.99340 1.21000 0.94900 1.01247 0.97301 1.22860 1.03122 0.94873 0.94898 1.22711 1.02646 0.96942 0.93437 1.22523 0.94693 0.88222 0.97558 1.47695 1.53179 1.32390 1.02584 1.15573 0.79485 0.82572 0.80308 1.90861 1.48326 1.28545 1.83369 1.45128 1.60874 1.28012 1.05103 1.21008 0.99157 0.97935 0.78962 1.21569 1.00352 0.97438 0.94282 1.18922 0.95188 0.95587 0.91507 1.21688 1.35110 1.08999 0.91983 0.91567 1.26041 0.95720 0.98002 1.00385 1.70129 1.43268 1.31435 1.12731 0.85347 0.78108 0.78863 0.78405 1.18150 1.20489 1.20538 0.94652 0.92191 0.89353 0.88065 0.93124 0.83335 0.83319 0.84553 0.86959 0.89927 0.89033 0.87748 0.87671 0.90209 0.91744 0.90629 0.75903 0.93707 0.93953 0.91669 0.91511 0.98978 0.99079 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.36 71.98 0.60 -2.47 16 2 C 0.18 3.49 0.53 3.96 0.00 3.49 16 3 C -0.09 -1.90 4.31 29.85 0.13 -1.77 16 4 C -0.07 -1.52 4.46 -19.87 -0.09 -1.61 16 5 C -0.12 -1.75 7.97 22.27 0.18 -1.57 16 6 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 7 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 8 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 9 C -0.13 -3.38 8.67 22.27 0.19 -3.19 16 10 C -0.12 -1.29 5.84 31.78 0.19 -1.10 16 11 C -0.12 -1.22 7.08 31.98 0.23 -1.00 16 12 C 0.09 1.53 6.70 86.79 0.58 2.11 16 13 N -0.62 -14.56 1.79 -782.14 -1.40 -15.96 16 14 C 0.72 23.41 6.18 179.05 1.11 24.51 16 15 O -0.63 -25.77 13.77 -3.98 -0.05 -25.82 16 16 N -0.74 -23.19 5.52 -478.53 -2.64 -25.83 16 17 C 0.15 5.93 5.67 86.38 0.49 6.42 16 18 C -0.10 -4.00 5.27 30.59 0.16 -3.84 16 19 C 0.03 1.38 4.97 29.85 0.15 1.53 16 20 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 22 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 23 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 24 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 H 0.03 0.99 6.90 -2.39 -0.02 0.97 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.56 8.05 -2.39 -0.02 1.54 16 32 H 0.05 1.51 6.83 -2.38 -0.02 1.50 16 33 H 0.15 1.33 7.65 -2.91 -0.02 1.31 16 34 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.11 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.08 2.83 6.17 -2.91 -0.02 2.81 16 38 H 0.09 0.88 5.15 -2.38 -0.01 0.87 16 39 H 0.10 0.71 7.83 -2.39 -0.02 0.69 16 40 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 43 H 0.08 1.16 7.13 -2.39 -0.02 1.14 16 44 H 0.40 10.45 6.89 -92.71 -0.64 9.81 16 45 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 49 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 50 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 51 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -75.22 398.34 3.76 -71.46 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.26 Total: 22.72 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 5.28 Total: -15.22 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.76 Total: -99.54 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -75.22 3.76 -71.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184857169.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.169 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds