Wall clock time and date at job start Tue Mar 31 2020 15:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.01360 * 2 1 4 4 C 1.54262 * 110.03321 * 238.61027 * 2 1 3 5 5 C 1.54954 * 104.15936 * 217.13688 * 4 2 1 6 6 C 1.54890 * 102.77944 * 37.89074 * 5 4 2 7 7 C 1.53868 * 110.03268 * 121.39016 * 2 1 3 8 8 H 1.08997 * 110.03849 * 238.57276 * 7 2 1 9 9 N 1.46904 * 110.02999 * 359.95519 * 7 2 1 10 10 C 1.46904 * 110.99946 * 204.99552 * 9 7 2 11 11 C 1.50697 * 109.47430 * 179.97438 * 10 9 7 12 12 O 1.21296 * 119.99617 * 5.14440 * 11 10 9 13 13 N 1.34769 * 120.00122 * 185.14518 * 11 10 9 14 14 C 1.46506 * 119.99991 * 185.18880 * 13 11 10 15 15 C 1.50702 * 109.46890 * 90.00156 * 14 13 11 16 16 H 1.08004 * 119.99995 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00332 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00397 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47067 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47177 * 120.00268 * 19 17 15 22 22 H 1.48496 * 109.47186 * 239.99989 * 19 17 15 23 23 C 1.39926 * 120.00155 * 5.19503 * 13 11 10 24 24 C 1.38870 * 120.06822 * 292.34121 * 23 13 11 25 25 C 1.38114 * 119.92823 * 179.79310 * 24 23 13 26 26 C 1.38276 * 120.06836 * 0.48246 * 25 24 23 27 27 C 1.38280 * 120.14577 * 359.74983 * 26 25 24 28 28 C 1.38111 * 120.06854 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.47295 * 59.29554 * 1 2 3 30 30 H 1.08998 * 109.47153 * 179.29338 * 1 2 3 31 31 H 1.09003 * 109.47127 * 299.30066 * 1 2 3 32 32 H 1.09001 * 109.47453 * 60.70581 * 3 2 1 33 33 H 1.09007 * 109.46880 * 180.69637 * 3 2 1 34 34 H 1.08994 * 109.47706 * 300.70078 * 3 2 1 35 35 H 1.09002 * 110.48838 * 335.78648 * 4 2 1 36 36 H 1.09011 * 110.48437 * 98.42341 * 4 2 1 37 37 H 1.09001 * 110.72379 * 279.56909 * 5 4 2 38 38 H 1.09004 * 110.92157 * 156.29630 * 5 4 2 39 39 H 1.09003 * 110.48638 * 203.40588 * 6 5 4 40 40 H 1.08993 * 110.48688 * 80.75651 * 6 5 4 41 41 H 1.00896 * 111.00387 * 81.04470 * 9 7 2 42 42 H 1.08997 * 109.47192 * 300.00030 * 10 9 7 43 43 H 1.09002 * 109.47002 * 60.00055 * 10 9 7 44 44 H 1.08996 * 109.47679 * 209.99855 * 14 13 11 45 45 H 1.08998 * 109.47420 * 330.00608 * 14 13 11 46 46 H 0.97005 * 119.99757 * 179.97438 * 18 17 15 47 47 H 1.07996 * 120.03485 * 0.02562 * 24 23 13 48 48 H 1.07997 * 119.96500 * 180.23648 * 25 24 23 49 49 H 1.08008 * 119.93003 * 179.77214 * 26 25 24 50 50 H 1.08003 * 119.96963 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.04109 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7549 -1.2372 5 6 3.3136 -1.5010 -0.7185 6 6 2.8874 -1.9404 0.7043 7 6 2.0571 -0.7529 1.2340 8 1 2.6867 -0.0946 1.8325 9 7 0.9328 -1.2445 2.0417 10 6 1.3304 -1.4217 3.4448 11 6 0.1538 -1.9251 4.2406 12 8 -0.8833 -2.2063 3.6778 13 7 0.2540 -2.0630 5.5775 14 6 -0.8482 -2.6586 6.3370 15 6 -0.6515 -4.1503 6.4217 16 1 0.2087 -4.6088 5.9566 17 6 -1.5689 -4.9296 7.0937 18 7 -2.6162 -4.3713 7.6605 19 14 -1.3247 -6.7786 7.1993 20 1 -0.0787 -7.1549 6.4843 21 1 -1.2201 -7.1835 8.6241 22 1 -2.4816 -7.4673 6.5727 23 6 1.4105 -1.6372 6.2401 24 6 2.6140 -2.2985 6.0336 25 6 3.7547 -1.8732 6.6859 26 6 3.6971 -0.7963 7.5513 27 6 2.4993 -0.1386 7.7628 28 6 1.3560 -0.5561 7.1101 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0127 31 1 -0.3633 0.5029 0.8962 32 1 1.7056 1.9511 0.8962 33 1 3.1436 1.4273 -0.0125 34 1 1.6851 1.9586 -0.8835 35 1 1.3143 -1.4652 -1.5974 36 1 2.3297 -0.0525 -2.0255 37 1 4.1710 -0.8293 -0.6748 38 1 3.5356 -2.3683 -1.3403 39 1 3.7637 -2.1032 1.3319 40 1 2.2771 -2.8422 0.6583 41 1 0.5610 -2.1014 1.6603 42 1 2.1447 -2.1438 3.5033 43 1 1.6618 -0.4664 3.8519 44 1 -0.8665 -2.2370 7.3420 45 1 -1.7922 -2.4445 5.8360 46 1 -3.2619 -4.9197 8.1330 47 1 2.6588 -3.1422 5.3609 48 1 4.6918 -2.3846 6.5228 49 1 4.5898 -0.4678 8.0630 50 1 2.4574 0.7020 8.4397 51 1 0.4206 -0.0424 7.2758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191856168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:39 Heat of formation + Delta-G solvation = -14.222726 kcal Electronic energy + Delta-G solvation = -29148.030630 eV Core-core repulsion = 25432.675209 eV Total energy + Delta-G solvation = -3715.355421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.05950 -39.41248 -38.03260 -34.95541 -34.16879 -32.68297 -32.19388 -30.72824 -29.42708 -28.63647 -27.38302 -26.96355 -25.27135 -23.84211 -22.74430 -22.30655 -21.93420 -20.92114 -19.16970 -18.57598 -17.03416 -16.51806 -16.13634 -15.93599 -15.58577 -15.34960 -14.98662 -14.54381 -14.31943 -14.24571 -13.93277 -13.56446 -13.42607 -13.17098 -13.14167 -13.00243 -12.90379 -12.33449 -12.30825 -12.09426 -11.90316 -11.69784 -11.47234 -11.34843 -11.21098 -11.17064 -11.00591 -10.83968 -10.77608 -10.66195 -10.60911 -10.50577 -10.40294 -10.19626 -9.73015 -9.29551 -8.71307 -8.56474 -8.45347 -8.19155 -7.65745 -6.07770 -4.12560 1.56064 1.63222 3.27807 3.30259 3.35545 3.39272 3.65306 4.01624 4.31367 4.40980 4.42750 4.55201 4.81459 5.02476 5.15706 5.16001 5.17606 5.24991 5.27163 5.27642 5.30877 5.34566 5.42511 5.48492 5.59749 5.61736 5.68135 5.68403 5.75243 5.80674 5.84079 5.87546 5.90551 6.00548 6.02385 6.07775 6.14865 6.24671 6.28436 6.40340 6.58675 6.65562 6.71547 6.80272 6.92768 7.13549 7.19369 7.37382 7.48085 7.51635 7.88016 8.16929 8.36158 8.84124 8.99986 9.52170 11.00532 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.003727 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.963827 B = 7511.170701 C = 8852.352387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.156 4.156 7 C 0.092 3.908 8 H 0.079 0.921 9 N -0.662 5.662 10 C 0.041 3.959 11 C 0.515 3.485 12 O -0.517 6.517 13 N -0.564 5.564 14 C 0.248 3.752 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.166 3.834 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.135 4.135 27 C -0.109 4.109 28 C -0.124 4.124 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.352 0.648 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.034 0.966 45 H 0.049 0.951 46 H 0.263 0.737 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.076 10.440 -10.757 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.061 4.061 3 C -0.193 4.193 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.195 4.195 7 C -0.018 4.018 8 H 0.097 0.903 9 N -0.294 5.294 10 C -0.091 4.091 11 C 0.302 3.698 12 O -0.391 6.391 13 N -0.293 5.293 14 C 0.130 3.870 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.074 3.926 24 C -0.145 4.145 25 C -0.129 4.129 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.173 0.827 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.986 10.845 -10.847 20.758 hybrid contribution 0.707 -2.014 0.338 2.161 sum 14.693 8.830 -10.509 20.107 Atomic orbital electron populations 1.21585 0.93151 1.01994 1.00883 1.21161 0.96830 0.94653 0.93419 1.21874 1.00249 0.95443 1.01733 1.22532 0.97102 0.98832 0.97039 1.22403 0.97791 0.99707 0.95960 1.23160 1.00432 0.98916 0.97041 1.22309 0.90306 0.95307 0.93902 0.90268 1.60387 1.31071 1.37612 1.00311 1.21926 0.95641 1.01536 0.90026 1.20275 0.89263 0.78265 0.81971 1.90679 1.30208 1.49203 1.69058 1.45961 1.17095 1.59658 1.06579 1.19421 0.84117 0.92776 0.90680 1.21397 1.08831 0.91808 1.34453 0.92454 1.24908 0.94876 0.98924 0.95240 1.69942 1.12037 1.35725 1.35461 0.86438 0.78187 0.85107 0.77680 1.19835 1.20895 1.20810 1.17743 0.86908 0.92953 0.95036 1.21351 0.92574 0.99185 1.01438 1.20954 0.97774 0.97075 0.97116 1.21045 0.97764 0.97073 0.99489 1.20967 0.92444 0.99965 0.99389 1.21321 0.98952 0.96200 0.97942 0.94367 0.92626 0.91443 0.92478 0.93092 0.92836 0.91501 0.91811 0.91686 0.91863 0.91781 0.91341 0.82726 0.92633 0.88996 0.94794 0.93271 0.92699 0.86117 0.86250 0.86435 0.86110 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 7.37 37.16 0.27 -1.13 16 2 C -0.06 -0.62 0.94 -153.39 -0.14 -0.76 16 3 C -0.14 -1.25 8.14 37.16 0.30 -0.94 16 4 C -0.12 -1.07 5.91 -25.04 -0.15 -1.22 16 5 C -0.12 -1.05 6.91 -24.70 -0.17 -1.22 16 6 C -0.16 -1.58 6.46 -25.07 -0.16 -1.74 16 7 C 0.09 1.03 2.86 -66.60 -0.19 0.84 16 8 H 0.08 0.88 7.34 -51.93 -0.38 0.50 16 9 N -0.66 -9.41 4.11 -106.81 -0.44 -9.85 16 10 C 0.04 0.64 4.51 -4.97 -0.02 0.61 16 11 C 0.52 10.70 7.62 -10.99 -0.08 10.62 16 12 O -0.52 -12.74 15.71 5.54 0.09 -12.65 16 13 N -0.56 -12.14 2.51 -114.73 -0.29 -12.43 16 14 C 0.25 6.52 5.15 -5.19 -0.03 6.49 16 15 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 16 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 19 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 C 0.17 3.00 4.43 -83.69 -0.37 2.62 16 24 C -0.13 -1.99 8.45 -39.39 -0.33 -2.33 16 25 C -0.11 -1.44 10.04 -39.61 -0.40 -1.83 16 26 C -0.14 -1.65 10.04 -39.55 -0.40 -2.04 16 27 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 28 C -0.12 -2.00 9.67 -39.39 -0.38 -2.38 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.71 7.46 -51.93 -0.39 0.33 16 31 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 36 H 0.06 0.52 7.84 -51.92 -0.41 0.11 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 41 H 0.35 5.38 7.28 -39.29 -0.29 5.09 16 42 H 0.06 0.80 6.90 -51.93 -0.36 0.44 16 43 H 0.09 1.34 7.79 -51.93 -0.40 0.93 16 44 H 0.03 0.92 7.84 -51.93 -0.41 0.51 16 45 H 0.05 1.45 7.36 -51.93 -0.38 1.06 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.12 1.91 7.56 -52.49 -0.40 1.52 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 49 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 50 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 51 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -31.50 405.83 -10.69 -42.19 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.81 Total: 5.31 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.07 Total: -9.78 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.01 Total: -48.08 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.50 -10.69 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191856168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.967 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds