Wall clock time and date at job start Tue Mar 31 2020 15:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.01360 * 2 1 4 4 C 1.54262 * 110.03321 * 238.61027 * 2 1 3 5 5 C 1.54954 * 104.15936 * 217.13688 * 4 2 1 6 6 C 1.54890 * 102.77944 * 37.89074 * 5 4 2 7 7 C 1.53868 * 110.03268 * 121.39016 * 2 1 3 8 8 H 1.08997 * 110.03849 * 238.57276 * 7 2 1 9 9 N 1.46904 * 110.02999 * 359.95519 * 7 2 1 10 10 C 1.46904 * 110.99946 * 204.99552 * 9 7 2 11 11 C 1.50697 * 109.47430 * 179.97438 * 10 9 7 12 12 O 1.21296 * 119.99617 * 5.14440 * 11 10 9 13 13 N 1.34769 * 120.00122 * 185.14518 * 11 10 9 14 14 C 1.46506 * 119.99991 * 185.18880 * 13 11 10 15 15 C 1.50702 * 109.46890 * 90.00156 * 14 13 11 16 16 H 1.08004 * 119.99995 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00332 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00397 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47067 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47177 * 120.00268 * 19 17 15 22 22 H 1.48496 * 109.47186 * 239.99989 * 19 17 15 23 23 C 1.39926 * 120.00155 * 5.19503 * 13 11 10 24 24 C 1.38870 * 120.06822 * 292.34121 * 23 13 11 25 25 C 1.38114 * 119.92823 * 179.79310 * 24 23 13 26 26 C 1.38276 * 120.06836 * 0.48246 * 25 24 23 27 27 C 1.38280 * 120.14577 * 359.74983 * 26 25 24 28 28 C 1.38111 * 120.06854 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.47295 * 59.29554 * 1 2 3 30 30 H 1.08998 * 109.47153 * 179.29338 * 1 2 3 31 31 H 1.09003 * 109.47127 * 299.30066 * 1 2 3 32 32 H 1.09001 * 109.47453 * 60.70581 * 3 2 1 33 33 H 1.09007 * 109.46880 * 180.69637 * 3 2 1 34 34 H 1.08994 * 109.47706 * 300.70078 * 3 2 1 35 35 H 1.09002 * 110.48838 * 335.78648 * 4 2 1 36 36 H 1.09011 * 110.48437 * 98.42341 * 4 2 1 37 37 H 1.09001 * 110.72379 * 279.56909 * 5 4 2 38 38 H 1.09004 * 110.92157 * 156.29630 * 5 4 2 39 39 H 1.09003 * 110.48638 * 203.40588 * 6 5 4 40 40 H 1.08993 * 110.48688 * 80.75651 * 6 5 4 41 41 H 1.00896 * 111.00387 * 81.04470 * 9 7 2 42 42 H 1.08997 * 109.47192 * 300.00030 * 10 9 7 43 43 H 1.09002 * 109.47002 * 60.00055 * 10 9 7 44 44 H 1.08996 * 109.47679 * 209.99855 * 14 13 11 45 45 H 1.08998 * 109.47420 * 330.00608 * 14 13 11 46 46 H 0.97005 * 119.99757 * 179.97438 * 18 17 15 47 47 H 1.07996 * 120.03485 * 0.02562 * 24 23 13 48 48 H 1.07997 * 119.96500 * 180.23648 * 25 24 23 49 49 H 1.08008 * 119.93003 * 179.77214 * 26 25 24 50 50 H 1.08003 * 119.96963 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.04109 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7549 -1.2372 5 6 3.3136 -1.5010 -0.7185 6 6 2.8874 -1.9404 0.7043 7 6 2.0571 -0.7529 1.2340 8 1 2.6867 -0.0946 1.8325 9 7 0.9328 -1.2445 2.0417 10 6 1.3304 -1.4217 3.4448 11 6 0.1538 -1.9251 4.2406 12 8 -0.8833 -2.2063 3.6778 13 7 0.2540 -2.0630 5.5775 14 6 -0.8482 -2.6586 6.3370 15 6 -0.6515 -4.1503 6.4217 16 1 0.2087 -4.6088 5.9566 17 6 -1.5689 -4.9296 7.0937 18 7 -2.6162 -4.3713 7.6605 19 14 -1.3247 -6.7786 7.1993 20 1 -0.0787 -7.1549 6.4843 21 1 -1.2201 -7.1835 8.6241 22 1 -2.4816 -7.4673 6.5727 23 6 1.4105 -1.6372 6.2401 24 6 2.6140 -2.2985 6.0336 25 6 3.7547 -1.8732 6.6859 26 6 3.6971 -0.7963 7.5513 27 6 2.4993 -0.1386 7.7628 28 6 1.3560 -0.5561 7.1101 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0127 31 1 -0.3633 0.5029 0.8962 32 1 1.7056 1.9511 0.8962 33 1 3.1436 1.4273 -0.0125 34 1 1.6851 1.9586 -0.8835 35 1 1.3143 -1.4652 -1.5974 36 1 2.3297 -0.0525 -2.0255 37 1 4.1710 -0.8293 -0.6748 38 1 3.5356 -2.3683 -1.3403 39 1 3.7637 -2.1032 1.3319 40 1 2.2771 -2.8422 0.6583 41 1 0.5610 -2.1014 1.6603 42 1 2.1447 -2.1438 3.5033 43 1 1.6618 -0.4664 3.8519 44 1 -0.8665 -2.2370 7.3420 45 1 -1.7922 -2.4445 5.8360 46 1 -3.2619 -4.9197 8.1330 47 1 2.6588 -3.1422 5.3609 48 1 4.6918 -2.3846 6.5228 49 1 4.5898 -0.4678 8.0630 50 1 2.4574 0.7020 8.4397 51 1 0.4206 -0.0424 7.2758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191856168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:38 Heat of formation + Delta-G solvation = -31.066968 kcal Electronic energy + Delta-G solvation = -29148.761051 eV Core-core repulsion = 25432.675209 eV Total energy + Delta-G solvation = -3716.085842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47097 -40.36954 -39.40419 -36.57295 -35.39443 -34.76331 -32.99471 -31.86771 -30.96012 -29.92439 -28.58851 -28.16809 -26.52626 -25.02315 -24.32238 -23.49251 -23.29244 -21.70689 -20.57041 -19.59640 -18.74895 -18.26541 -17.56726 -17.09402 -16.92907 -16.64713 -16.28775 -16.00782 -15.61642 -15.38457 -14.99798 -14.76605 -14.56931 -14.33934 -14.28014 -14.22651 -14.11879 -13.78054 -13.59311 -13.42459 -13.19423 -13.01114 -12.80060 -12.74508 -12.68351 -12.45076 -12.24474 -12.13187 -12.12343 -11.90352 -11.72614 -11.57433 -11.49251 -11.31866 -11.24625 -10.88753 -10.69884 -10.06411 -9.83373 -9.36155 -9.17587 -8.26963 -6.42501 0.37668 0.50828 1.32891 1.35167 1.46856 1.69351 2.10608 2.36250 2.87061 3.02761 3.19657 3.60039 3.62103 3.77304 3.98136 4.04569 4.12771 4.26477 4.31343 4.33208 4.40642 4.44550 4.47662 4.56429 4.60635 4.60736 4.66386 4.75145 4.79462 4.92186 4.96519 4.98452 5.02807 5.07321 5.10197 5.14705 5.16062 5.20246 5.26836 5.37088 5.41532 5.45543 5.54384 5.57637 5.63078 5.64836 5.66342 5.76639 5.98077 6.03870 6.09369 6.33193 6.63907 6.73866 7.21386 7.36849 8.80610 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.003727 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.963827 B = 7511.170701 C = 8852.352387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.155 4.155 7 C 0.091 3.909 8 H 0.086 0.914 9 N -0.673 5.673 10 C 0.065 3.935 11 C 0.505 3.495 12 O -0.570 6.570 13 N -0.566 5.566 14 C 0.266 3.734 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.969 3.031 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.279 1.279 23 C 0.126 3.874 24 C -0.135 4.135 25 C -0.102 4.102 26 C -0.120 4.120 27 C -0.103 4.103 28 C -0.143 4.143 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.343 0.657 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.018 0.982 45 H 0.003 0.997 46 H 0.268 0.732 47 H 0.114 0.886 48 H 0.154 0.846 49 H 0.160 0.840 50 H 0.151 0.849 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.322 10.631 -10.825 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.189 4.189 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.194 4.194 7 C -0.018 4.018 8 H 0.104 0.896 9 N -0.304 5.304 10 C -0.067 4.067 11 C 0.295 3.705 12 O -0.449 6.449 13 N -0.294 5.294 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.205 1.205 23 C 0.035 3.965 24 C -0.154 4.154 25 C -0.120 4.120 26 C -0.137 4.137 27 C -0.122 4.122 28 C -0.163 4.163 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.163 0.837 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.036 0.964 45 H 0.021 0.979 46 H 0.077 0.923 47 H 0.132 0.868 48 H 0.172 0.828 49 H 0.178 0.822 50 H 0.169 0.831 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.290 11.070 -10.908 24.001 hybrid contribution -0.591 -1.976 0.419 2.105 sum 17.699 9.095 -10.488 22.494 Atomic orbital electron populations 1.21516 0.94805 1.00662 1.00194 1.21182 0.95408 0.95733 0.93703 1.21842 1.01138 0.94249 1.01695 1.22506 0.97140 0.98876 0.96686 1.22389 0.97843 1.00193 0.94722 1.23120 1.00199 0.97730 0.98344 1.22433 0.89541 0.95932 0.93902 0.89629 1.60412 1.32864 1.37198 0.99964 1.21717 0.93047 1.02029 0.89901 1.21294 0.90146 0.77212 0.81891 1.90636 1.32547 1.51624 1.70059 1.45784 1.17286 1.59385 1.06910 1.18806 0.84345 0.92540 0.89720 1.21628 1.08902 0.92809 1.34631 0.92876 1.25861 0.94373 1.04139 0.94613 1.70066 1.12857 1.37747 1.36014 0.85340 0.78300 0.78676 0.78347 1.19023 1.19388 1.20456 1.18015 0.86342 0.95007 0.97116 1.21377 0.92747 0.99127 1.02182 1.21344 0.97809 0.97019 0.95828 1.21550 0.98579 0.95575 0.98032 1.21321 0.91612 1.00512 0.98707 1.21380 0.99924 0.96319 0.98631 0.93163 0.94341 0.93872 0.93516 0.91575 0.91926 0.92333 0.90245 0.90216 0.91084 0.90947 0.92703 0.83738 0.91041 0.87727 0.96444 0.97865 0.92296 0.86787 0.82799 0.82249 0.83128 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.79 7.37 71.98 0.53 -2.26 16 2 C -0.06 -1.17 0.94 -51.46 -0.05 -1.22 16 3 C -0.13 -2.18 8.14 71.98 0.59 -1.59 16 4 C -0.11 -1.88 5.91 31.69 0.19 -1.69 16 5 C -0.11 -1.69 6.91 31.91 0.22 -1.47 16 6 C -0.15 -2.91 6.46 31.67 0.20 -2.71 16 7 C 0.09 1.98 2.86 45.64 0.13 2.11 16 8 H 0.09 1.75 7.34 -2.39 -0.02 1.74 16 9 N -0.67 -19.86 4.11 -491.83 -2.02 -21.88 16 10 C 0.07 2.07 4.51 85.56 0.39 2.45 16 11 C 0.50 22.45 7.62 87.66 0.67 23.12 16 12 O -0.57 -30.54 15.71 -3.08 -0.05 -30.59 16 13 N -0.57 -26.00 2.51 -635.30 -1.59 -27.59 16 14 C 0.27 15.11 5.15 85.63 0.44 15.55 16 15 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 16 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 17 C 0.01 0.54 5.46 84.65 0.46 1.01 16 18 N -0.93 -57.23 13.29 21.44 0.28 -56.95 16 19 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 C 0.13 4.66 4.43 38.15 0.17 4.82 16 24 C -0.13 -4.13 8.45 22.39 0.19 -3.94 16 25 C -0.10 -2.26 10.04 22.25 0.22 -2.04 16 26 C -0.12 -2.36 10.04 22.29 0.22 -2.14 16 27 C -0.10 -2.43 10.04 22.25 0.22 -2.21 16 28 C -0.14 -4.65 9.67 22.39 0.22 -4.43 16 29 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.04 1.05 7.46 -2.39 -0.02 1.03 16 31 H 0.04 1.25 7.84 -2.39 -0.02 1.23 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.06 7.84 -2.39 -0.02 1.04 16 36 H 0.08 1.08 7.84 -2.38 -0.02 1.06 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.19 7.56 -2.39 -0.02 1.17 16 41 H 0.34 11.18 7.28 -89.70 -0.65 10.52 16 42 H 0.07 2.04 6.90 -2.39 -0.02 2.03 16 43 H 0.10 3.06 7.79 -2.39 -0.02 3.04 16 44 H 0.02 1.03 7.84 -2.39 -0.02 1.01 16 45 H 0.00 0.21 7.36 -2.39 -0.02 0.19 16 46 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 47 H 0.11 3.57 7.56 -2.91 -0.02 3.55 16 48 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 49 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 50 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 51 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -74.14 405.83 4.14 -70.00 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.24 Total: 27.86 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.25 Total: -8.53 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -3.33 Total: -106.42 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -74.14 4.14 -70.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191856168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.935 kcal (2) G-P(sol) polarization free energy of solvation -74.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds