Wall clock time and date at job start Tue Mar 31 2020 15:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.05090 * 2 1 4 4 C 1.54263 * 110.03231 * 238.58923 * 2 1 3 5 5 C 1.54883 * 104.19632 * 264.32210 * 4 2 1 6 6 C 1.54887 * 102.74823 * 322.05910 * 5 4 2 7 7 C 1.53867 * 110.03542 * 121.42197 * 2 1 3 8 8 H 1.09002 * 110.03642 * 359.94852 * 7 2 1 9 9 N 1.46906 * 110.02927 * 238.57158 * 7 2 1 10 10 C 1.46902 * 110.99826 * 164.83715 * 9 7 2 11 11 C 1.50698 * 109.47261 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99519 * 0.78896 * 11 10 9 13 13 N 1.34769 * 120.00251 * 180.80153 * 11 10 9 14 14 C 1.46501 * 120.00055 * 184.61963 * 13 11 10 15 15 C 1.50703 * 109.46951 * 269.99643 * 14 13 11 16 16 H 1.08004 * 120.00236 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00171 * 179.72472 * 15 14 13 18 18 N 1.31509 * 120.00661 * 180.27406 * 17 15 14 19 19 Si 1.86804 * 119.99594 * 0.27605 * 17 15 14 20 20 H 1.48501 * 109.47109 * 90.00175 * 19 17 15 21 21 H 1.48502 * 109.46982 * 209.99682 * 19 17 15 22 22 H 1.48495 * 109.47216 * 329.99962 * 19 17 15 23 23 C 1.39926 * 120.00140 * 4.61424 * 13 11 10 24 24 C 1.38866 * 120.07457 * 247.55199 * 23 13 11 25 25 C 1.38113 * 119.93294 * 179.73906 * 24 23 13 26 26 C 1.38281 * 120.06641 * 0.53808 * 25 24 23 27 27 C 1.38283 * 120.14539 * 359.71966 * 26 25 24 28 28 C 1.38119 * 120.06546 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47283 * 298.57876 * 1 2 3 30 30 H 1.09001 * 109.47820 * 58.58179 * 1 2 3 31 31 H 1.09007 * 109.47098 * 178.58029 * 1 2 3 32 32 H 1.08999 * 109.46865 * 175.78347 * 3 2 1 33 33 H 1.08994 * 109.47496 * 295.78418 * 3 2 1 34 34 H 1.09001 * 109.47127 * 55.79091 * 3 2 1 35 35 H 1.09005 * 110.49253 * 23.00056 * 4 2 1 36 36 H 1.09001 * 110.48662 * 145.64211 * 4 2 1 37 37 H 1.09006 * 110.75872 * 80.37061 * 5 4 2 38 38 H 1.09004 * 110.75962 * 203.74125 * 5 4 2 39 39 H 1.09000 * 110.48601 * 279.25844 * 6 5 4 40 40 H 1.08996 * 110.48744 * 156.62042 * 6 5 4 41 41 H 1.00897 * 111.00426 * 40.88304 * 9 7 2 42 42 H 1.09001 * 109.47403 * 59.99889 * 10 9 7 43 43 H 1.09008 * 109.47082 * 299.99922 * 10 9 7 44 44 H 1.09004 * 109.47293 * 150.00029 * 14 13 11 45 45 H 1.08998 * 109.47260 * 29.99842 * 14 13 11 46 46 H 0.96993 * 120.00503 * 179.97438 * 18 17 15 47 47 H 1.08004 * 120.03510 * 359.97438 * 24 23 13 48 48 H 1.07996 * 119.96845 * 180.25520 * 25 24 23 49 49 H 1.07997 * 119.93106 * 179.74061 * 26 25 24 50 50 H 1.07994 * 119.96836 * 180.02562 * 27 26 25 51 51 H 1.08004 * 120.03115 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0584 -0.7553 -1.2369 5 6 2.3281 -2.1900 -0.7193 6 6 2.8875 -1.9406 0.7033 7 6 2.0571 -0.7536 1.2336 8 1 1.2230 -1.1187 1.8328 9 7 2.9056 0.1335 2.0405 10 6 3.1261 -0.4252 3.3812 11 6 3.9981 0.5105 4.1781 12 8 4.3850 1.5481 3.6833 13 7 4.3484 0.1942 5.4405 14 6 5.1107 1.1480 6.2500 15 6 6.5854 0.9109 6.0496 16 1 6.9212 0.1283 5.3854 17 6 7.5060 1.6971 6.7095 18 7 8.7929 1.4938 6.5306 19 14 6.9252 3.0512 7.8578 20 1 6.7772 2.5060 9.2312 21 1 7.9209 4.1530 7.8674 22 1 5.6161 3.5711 7.3879 23 6 3.9838 -1.0452 5.9781 24 6 3.0608 -1.1102 7.0136 25 6 2.6990 -2.3354 7.5384 26 6 3.2632 -3.4959 7.0413 27 6 4.1866 -3.4343 6.0138 28 6 4.5486 -2.2124 5.4811 29 1 -0.3634 0.4916 0.9024 30 1 -0.3635 0.5357 -0.8770 31 1 -0.3634 -1.0274 -0.0255 32 1 3.1419 1.4272 0.0756 33 1 1.7593 1.9319 -0.9253 34 1 1.6364 1.9767 0.8499 35 1 1.3061 -0.7695 -2.0256 36 1 2.9810 -0.2998 -1.5967 37 1 1.4031 -2.7651 -0.6753 38 1 3.0676 -2.6929 -1.3425 39 1 3.9440 -1.6766 0.6569 40 1 2.7402 -2.8197 1.3307 41 1 2.5106 1.0603 2.0955 42 1 3.6168 -1.3946 3.2947 43 1 2.1678 -0.5468 3.8862 44 1 4.8607 1.0129 7.3023 45 1 4.8614 2.1643 5.9449 46 1 9.4405 2.0471 6.9945 47 1 2.6235 -0.2038 7.4056 48 1 1.9782 -2.3869 8.3410 49 1 2.9819 -4.4525 7.4561 50 1 4.6251 -4.3424 5.6274 51 1 5.2702 -2.1649 4.6789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191856178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:43 Heat of formation + Delta-G solvation = -5.513489 kcal Electronic energy + Delta-G solvation = -29194.453729 eV Core-core repulsion = 25479.475969 eV Total energy + Delta-G solvation = -3714.977760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.13693 -39.47722 -38.09887 -35.04192 -34.17875 -32.57725 -32.34559 -30.76526 -29.71725 -28.71893 -27.61295 -27.28703 -25.38178 -23.91267 -22.59962 -22.40471 -21.83879 -20.54872 -19.11356 -18.57920 -17.07681 -16.93583 -16.25564 -15.95674 -15.71090 -15.36173 -15.12937 -14.87648 -14.33354 -14.13732 -13.95890 -13.80839 -13.48176 -13.20557 -13.16688 -12.98295 -12.90671 -12.53027 -12.33535 -12.13277 -11.88610 -11.78325 -11.63770 -11.40991 -11.26440 -11.10963 -11.06828 -10.87956 -10.82555 -10.61930 -10.57796 -10.57513 -10.50112 -10.18916 -9.56255 -9.34681 -8.74682 -8.64963 -8.58579 -8.26296 -7.71741 -6.07660 -4.06313 1.50419 1.59275 3.22731 3.26816 3.33917 3.37355 3.56426 3.97259 4.29613 4.37897 4.39574 4.47918 4.79512 4.96277 5.12128 5.14133 5.16839 5.20407 5.22298 5.25761 5.30900 5.32822 5.36006 5.48328 5.54406 5.58462 5.62201 5.64524 5.73508 5.76907 5.81624 5.86245 5.87864 5.91796 5.98504 6.03906 6.14367 6.20845 6.22104 6.33605 6.42815 6.51865 6.62786 6.68287 6.73336 6.89503 7.03180 7.10973 7.33124 7.48942 7.58836 8.20680 8.45884 8.86956 8.96466 9.51452 11.05791 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003784 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.249316 B = 7397.591792 C = 8856.989797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.123 4.123 6 C -0.118 4.118 7 C 0.092 3.908 8 H 0.042 0.958 9 N -0.665 5.665 10 C 0.041 3.959 11 C 0.514 3.486 12 O -0.511 6.511 13 N -0.559 5.559 14 C 0.220 3.780 15 C -0.526 4.526 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.872 3.128 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.264 1.264 23 C 0.162 3.838 24 C -0.129 4.129 25 C -0.111 4.111 26 C -0.133 4.133 27 C -0.108 4.108 28 C -0.119 4.119 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.352 0.648 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.027 0.973 45 H 0.043 0.957 46 H 0.265 0.735 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.122 0.878 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.512 -9.708 -8.565 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.148 4.148 5 C -0.161 4.161 6 C -0.156 4.156 7 C -0.018 4.018 8 H 0.060 0.940 9 N -0.301 5.301 10 C -0.091 4.091 11 C 0.301 3.699 12 O -0.385 6.385 13 N -0.288 5.288 14 C 0.101 3.899 15 C -0.564 4.564 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.534 5.534 19 Si 0.699 3.301 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.189 1.189 23 C 0.070 3.930 24 C -0.148 4.148 25 C -0.129 4.129 26 C -0.151 4.151 27 C -0.127 4.127 28 C -0.138 4.138 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.175 0.825 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.140 0.860 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.513 -9.222 -9.035 21.758 hybrid contribution -0.820 0.767 1.313 1.728 sum -18.333 -8.455 -7.722 21.616 Atomic orbital electron populations 1.21935 0.94613 1.01523 1.01616 1.21245 0.94818 0.96082 0.94671 1.21845 1.03030 0.94243 1.00723 1.22426 1.00892 0.95190 0.96320 1.22437 1.00459 0.96710 0.96485 1.22461 1.01006 0.96573 0.95531 1.22221 0.93185 0.93028 0.93383 0.94029 1.60507 1.51666 1.05833 1.12060 1.21897 0.98463 0.98947 0.89803 1.20324 0.81191 0.87338 0.81037 1.90690 1.53970 1.26041 1.67767 1.45625 1.54132 1.15352 1.13717 1.19770 0.92129 0.88530 0.89485 1.21251 0.88188 1.18903 1.28065 0.90627 1.24816 0.94712 0.96852 0.96441 1.69882 1.00535 1.39991 1.42978 0.86902 0.79297 0.82460 0.81424 1.20077 1.20834 1.18907 1.17713 0.94312 0.85747 0.95227 1.21281 0.97582 0.98252 0.97727 1.20947 1.00162 0.92091 0.99750 1.21072 0.98292 0.98112 0.97648 1.21003 0.97695 0.97206 0.96806 1.21419 0.98937 0.91899 1.01578 0.92929 0.92532 0.92688 0.90353 0.93073 0.92979 0.91939 0.91137 0.91916 0.91578 0.90052 0.92176 0.82538 0.88343 0.93112 0.95543 0.93896 0.92545 0.85997 0.86133 0.86342 0.85999 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.14 37.16 0.30 -0.89 16 2 C -0.07 -0.68 0.94 -153.40 -0.14 -0.82 16 3 C -0.14 -1.54 7.09 37.16 0.26 -1.28 16 4 C -0.11 -1.02 5.90 -25.08 -0.15 -1.17 16 5 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 6 C -0.12 -1.28 6.00 -25.08 -0.15 -1.43 16 7 C 0.09 1.05 2.86 -66.60 -0.19 0.86 16 8 H 0.04 0.47 7.50 -51.93 -0.39 0.08 16 9 N -0.67 -9.59 4.90 -106.81 -0.52 -10.12 16 10 C 0.04 0.64 4.78 -4.98 -0.02 0.62 16 11 C 0.51 10.56 7.59 -10.99 -0.08 10.48 16 12 O -0.51 -12.48 15.82 5.55 0.09 -12.39 16 13 N -0.56 -11.78 2.51 -114.74 -0.29 -12.07 16 14 C 0.22 5.45 4.14 -5.19 -0.02 5.43 16 15 C -0.53 -15.32 9.94 -34.44 -0.34 -15.67 16 16 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 17 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 19 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 23 C 0.16 2.87 4.46 -83.69 -0.37 2.50 16 24 C -0.13 -1.96 9.67 -39.39 -0.38 -2.34 16 25 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 26 C -0.13 -1.59 10.04 -39.55 -0.40 -1.99 16 27 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 28 C -0.12 -1.92 8.35 -39.39 -0.33 -2.25 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.02 7.53 -51.93 -0.39 0.63 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.58 6.98 -51.93 -0.36 0.21 16 35 H 0.06 0.50 7.84 -51.93 -0.41 0.10 16 36 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.35 5.19 5.81 -39.29 -0.23 4.97 16 42 H 0.10 1.47 6.35 -51.93 -0.33 1.14 16 43 H 0.05 0.71 8.10 -51.92 -0.42 0.29 16 44 H 0.03 0.63 7.28 -51.93 -0.38 0.25 16 45 H 0.04 1.13 6.54 -51.93 -0.34 0.79 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 48 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 49 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 50 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 51 H 0.13 2.13 7.96 -52.48 -0.42 1.71 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -33.15 401.17 -10.39 -43.54 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.73 Total: 5.85 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.08 Total: -10.74 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.04 Total: -49.33 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.15 -10.39 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191856178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.025 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds