Wall clock time and date at job start Tue Mar 31 2020 15:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.05090 * 2 1 4 4 C 1.54263 * 110.03231 * 238.58923 * 2 1 3 5 5 C 1.54883 * 104.19632 * 264.32210 * 4 2 1 6 6 C 1.54887 * 102.74823 * 322.05910 * 5 4 2 7 7 C 1.53867 * 110.03542 * 121.42197 * 2 1 3 8 8 H 1.09002 * 110.03642 * 359.94852 * 7 2 1 9 9 N 1.46906 * 110.02927 * 238.57158 * 7 2 1 10 10 C 1.46902 * 110.99826 * 164.83715 * 9 7 2 11 11 C 1.50698 * 109.47261 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99519 * 0.78896 * 11 10 9 13 13 N 1.34769 * 120.00251 * 180.80153 * 11 10 9 14 14 C 1.46501 * 120.00055 * 184.61963 * 13 11 10 15 15 C 1.50703 * 109.46951 * 269.99643 * 14 13 11 16 16 H 1.08004 * 120.00236 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00171 * 179.72472 * 15 14 13 18 18 N 1.31509 * 120.00661 * 180.27406 * 17 15 14 19 19 Si 1.86804 * 119.99594 * 0.27605 * 17 15 14 20 20 H 1.48501 * 109.47109 * 90.00175 * 19 17 15 21 21 H 1.48502 * 109.46982 * 209.99682 * 19 17 15 22 22 H 1.48495 * 109.47216 * 329.99962 * 19 17 15 23 23 C 1.39926 * 120.00140 * 4.61424 * 13 11 10 24 24 C 1.38866 * 120.07457 * 247.55199 * 23 13 11 25 25 C 1.38113 * 119.93294 * 179.73906 * 24 23 13 26 26 C 1.38281 * 120.06641 * 0.53808 * 25 24 23 27 27 C 1.38283 * 120.14539 * 359.71966 * 26 25 24 28 28 C 1.38119 * 120.06546 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47283 * 298.57876 * 1 2 3 30 30 H 1.09001 * 109.47820 * 58.58179 * 1 2 3 31 31 H 1.09007 * 109.47098 * 178.58029 * 1 2 3 32 32 H 1.08999 * 109.46865 * 175.78347 * 3 2 1 33 33 H 1.08994 * 109.47496 * 295.78418 * 3 2 1 34 34 H 1.09001 * 109.47127 * 55.79091 * 3 2 1 35 35 H 1.09005 * 110.49253 * 23.00056 * 4 2 1 36 36 H 1.09001 * 110.48662 * 145.64211 * 4 2 1 37 37 H 1.09006 * 110.75872 * 80.37061 * 5 4 2 38 38 H 1.09004 * 110.75962 * 203.74125 * 5 4 2 39 39 H 1.09000 * 110.48601 * 279.25844 * 6 5 4 40 40 H 1.08996 * 110.48744 * 156.62042 * 6 5 4 41 41 H 1.00897 * 111.00426 * 40.88304 * 9 7 2 42 42 H 1.09001 * 109.47403 * 59.99889 * 10 9 7 43 43 H 1.09008 * 109.47082 * 299.99922 * 10 9 7 44 44 H 1.09004 * 109.47293 * 150.00029 * 14 13 11 45 45 H 1.08998 * 109.47260 * 29.99842 * 14 13 11 46 46 H 0.96993 * 120.00503 * 179.97438 * 18 17 15 47 47 H 1.08004 * 120.03510 * 359.97438 * 24 23 13 48 48 H 1.07996 * 119.96845 * 180.25520 * 25 24 23 49 49 H 1.07997 * 119.93106 * 179.74061 * 26 25 24 50 50 H 1.07994 * 119.96836 * 180.02562 * 27 26 25 51 51 H 1.08004 * 120.03115 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0584 -0.7553 -1.2369 5 6 2.3281 -2.1900 -0.7193 6 6 2.8875 -1.9406 0.7033 7 6 2.0571 -0.7536 1.2336 8 1 1.2230 -1.1187 1.8328 9 7 2.9056 0.1335 2.0405 10 6 3.1261 -0.4252 3.3812 11 6 3.9981 0.5105 4.1781 12 8 4.3850 1.5481 3.6833 13 7 4.3484 0.1942 5.4405 14 6 5.1107 1.1480 6.2500 15 6 6.5854 0.9109 6.0496 16 1 6.9212 0.1283 5.3854 17 6 7.5060 1.6971 6.7095 18 7 8.7929 1.4938 6.5306 19 14 6.9252 3.0512 7.8578 20 1 6.7772 2.5060 9.2312 21 1 7.9209 4.1530 7.8674 22 1 5.6161 3.5711 7.3879 23 6 3.9838 -1.0452 5.9781 24 6 3.0608 -1.1102 7.0136 25 6 2.6990 -2.3354 7.5384 26 6 3.2632 -3.4959 7.0413 27 6 4.1866 -3.4343 6.0138 28 6 4.5486 -2.2124 5.4811 29 1 -0.3634 0.4916 0.9024 30 1 -0.3635 0.5357 -0.8770 31 1 -0.3634 -1.0274 -0.0255 32 1 3.1419 1.4272 0.0756 33 1 1.7593 1.9319 -0.9253 34 1 1.6364 1.9767 0.8499 35 1 1.3061 -0.7695 -2.0256 36 1 2.9810 -0.2998 -1.5967 37 1 1.4031 -2.7651 -0.6753 38 1 3.0676 -2.6929 -1.3425 39 1 3.9440 -1.6766 0.6569 40 1 2.7402 -2.8197 1.3307 41 1 2.5106 1.0603 2.0955 42 1 3.6168 -1.3946 3.2947 43 1 2.1678 -0.5468 3.8862 44 1 4.8607 1.0129 7.3023 45 1 4.8614 2.1643 5.9449 46 1 9.4405 2.0471 6.9945 47 1 2.6235 -0.2038 7.4056 48 1 1.9782 -2.3869 8.3410 49 1 2.9819 -4.4525 7.4561 50 1 4.6251 -4.3424 5.6274 51 1 5.2702 -2.1649 4.6789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191856178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:42 Heat of formation + Delta-G solvation = -24.996204 kcal Electronic energy + Delta-G solvation = -29195.298563 eV Core-core repulsion = 25479.475969 eV Total energy + Delta-G solvation = -3715.822594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.52480 -40.43220 -39.44062 -36.61823 -35.39369 -34.73064 -33.15291 -31.89317 -31.33243 -30.02839 -28.77169 -28.33428 -26.57337 -24.93785 -24.17961 -23.59578 -23.26132 -21.43728 -20.50015 -19.56783 -19.15556 -18.36540 -17.60368 -17.25376 -16.92765 -16.65648 -16.26112 -15.99091 -15.88648 -15.47409 -15.15439 -14.95525 -14.69656 -14.40292 -14.32916 -14.29535 -14.01007 -13.86402 -13.73028 -13.54810 -13.26562 -13.03248 -12.84798 -12.58019 -12.51990 -12.37559 -12.22077 -12.15087 -11.98000 -11.87710 -11.78721 -11.75914 -11.40189 -11.36402 -11.33573 -10.92710 -10.85374 -10.13130 -9.84029 -9.38794 -9.23074 -8.36925 -6.42520 0.34289 0.49162 1.27964 1.32575 1.42810 1.62687 2.06281 2.27714 2.84526 2.96841 3.17676 3.53685 3.58544 3.71302 3.97503 4.04650 4.11483 4.19477 4.30273 4.31850 4.39814 4.44109 4.46197 4.51141 4.55337 4.56809 4.58942 4.68637 4.77913 4.79538 4.81768 4.84848 4.94552 5.04493 5.08615 5.10184 5.13911 5.16152 5.23831 5.34144 5.37409 5.39121 5.41714 5.45846 5.53162 5.59030 5.61875 5.72255 5.98867 6.06707 6.19037 6.35970 6.57359 6.64865 7.15708 7.29729 8.80415 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003784 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.249316 B = 7397.591792 C = 8856.989797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.120 4.120 7 C 0.091 3.909 8 H 0.052 0.948 9 N -0.681 5.681 10 C 0.062 3.938 11 C 0.504 3.496 12 O -0.564 6.564 13 N -0.562 5.562 14 C 0.231 3.769 15 C -0.535 4.535 16 H 0.024 0.976 17 C 0.013 3.987 18 N -0.944 5.944 19 Si 0.948 3.052 20 H -0.251 1.251 21 H -0.278 1.278 22 H -0.254 1.254 23 C 0.123 3.877 24 C -0.136 4.136 25 C -0.101 4.101 26 C -0.118 4.118 27 C -0.105 4.105 28 C -0.138 4.138 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.348 0.652 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.027 0.973 46 H 0.269 0.731 47 H 0.126 0.874 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.147 0.853 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.047 -11.562 -7.187 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.067 4.067 3 C -0.195 4.195 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.158 4.158 7 C -0.018 4.018 8 H 0.070 0.930 9 N -0.316 5.316 10 C -0.070 4.070 11 C 0.294 3.706 12 O -0.442 6.442 13 N -0.290 5.290 14 C 0.110 3.890 15 C -0.573 4.573 16 H 0.043 0.957 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.770 3.230 20 H -0.175 1.175 21 H -0.204 1.204 22 H -0.178 1.178 23 C 0.033 3.967 24 C -0.155 4.155 25 C -0.119 4.119 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.158 4.158 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.170 0.830 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.144 0.856 48 H 0.175 0.825 49 H 0.177 0.823 50 H 0.165 0.835 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.080 -11.139 -7.654 25.040 hybrid contribution 0.330 1.192 0.855 1.503 sum -20.750 -9.947 -6.799 23.994 Atomic orbital electron populations 1.21895 0.92846 1.02436 1.02031 1.21265 0.96121 0.95007 0.94267 1.21784 1.01081 0.95455 1.01172 1.22428 1.00820 0.95081 0.96418 1.22423 1.01263 0.96775 0.94877 1.22460 0.99391 0.96643 0.97305 1.22363 0.93037 0.92815 0.93631 0.92976 1.60526 1.53118 1.06269 1.11725 1.21702 0.98121 0.97331 0.89815 1.21283 0.80968 0.87335 0.81025 1.90645 1.56170 1.28415 1.68923 1.45549 1.53469 1.16237 1.13752 1.19389 0.89815 0.88895 0.90923 1.21444 0.91056 1.17723 1.27120 0.95748 1.25843 0.94609 0.99686 0.98403 1.70045 1.02115 1.41625 1.44597 0.85720 0.79098 0.78639 0.79591 1.17545 1.20366 1.17756 1.17985 0.96862 0.84397 0.97474 1.21423 0.97221 0.99948 0.96941 1.21376 0.99918 0.90900 0.99752 1.21563 0.96278 0.99741 0.95978 1.21310 0.97674 0.96597 0.96788 1.21361 0.99347 0.93157 1.01903 0.93212 0.91454 0.91512 0.93259 0.91708 0.93491 0.90009 0.92523 0.90072 0.91094 0.92846 0.91387 0.82995 0.87932 0.90935 0.93718 0.95549 0.92180 0.85599 0.82451 0.82268 0.83501 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.14 71.98 0.59 -1.40 16 2 C -0.07 -1.26 0.94 -51.46 -0.05 -1.31 16 3 C -0.14 -3.08 7.09 71.98 0.51 -2.57 16 4 C -0.11 -1.89 5.90 31.67 0.19 -1.70 16 5 C -0.12 -1.90 6.91 31.88 0.22 -1.68 16 6 C -0.12 -2.59 6.00 31.67 0.19 -2.40 16 7 C 0.09 2.04 2.86 45.63 0.13 2.17 16 8 H 0.05 1.08 7.50 -2.39 -0.02 1.06 16 9 N -0.68 -20.55 4.90 -491.83 -2.41 -22.97 16 10 C 0.06 2.00 4.78 85.56 0.41 2.41 16 11 C 0.50 22.04 7.59 87.66 0.66 22.71 16 12 O -0.56 -29.61 15.82 -3.06 -0.05 -29.66 16 13 N -0.56 -24.82 2.51 -635.31 -1.59 -26.41 16 14 C 0.23 11.86 4.14 85.63 0.35 12.21 16 15 C -0.53 -32.99 9.94 25.60 0.25 -32.74 16 16 H 0.02 1.69 8.06 -2.91 -0.02 1.67 16 17 C 0.01 0.77 5.47 84.66 0.46 1.23 16 18 N -0.94 -61.34 13.96 21.45 0.30 -61.04 16 19 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 20 H -0.25 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 23 C 0.12 4.42 4.46 38.15 0.17 4.59 16 24 C -0.14 -3.90 9.67 22.39 0.22 -3.68 16 25 C -0.10 -2.13 10.04 22.25 0.22 -1.90 16 26 C -0.12 -2.29 10.04 22.29 0.22 -2.07 16 27 C -0.11 -2.53 10.04 22.25 0.22 -2.31 16 28 C -0.14 -4.56 8.35 22.39 0.19 -4.37 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 32 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.08 6.98 -2.39 -0.02 1.06 16 35 H 0.08 1.11 7.84 -2.38 -0.02 1.09 16 36 H 0.06 1.13 7.85 -2.39 -0.02 1.11 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.45 8.05 -2.39 -0.02 1.43 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.35 10.87 5.81 -89.70 -0.52 10.35 16 42 H 0.10 3.20 6.35 -2.39 -0.02 3.19 16 43 H 0.07 2.00 8.10 -2.38 -0.02 1.98 16 44 H 0.04 2.12 7.28 -2.38 -0.02 2.10 16 45 H 0.03 1.44 6.54 -2.39 -0.02 1.42 16 46 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 47 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 48 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 49 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 50 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 51 H 0.10 3.70 7.96 -2.91 -0.02 3.68 16 Total: -1.00 -78.72 401.17 3.62 -75.10 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.32 Total: 30.39 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.17 Total: -12.79 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -3.70 Total: -110.42 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.05 Total: -29.66 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -78.72 3.62 -75.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191856178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.102 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds