Wall clock time and date at job start Tue Mar 31 2020 16:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47228 * 2 1 4 4 C 1.53003 * 109.47027 * 120.00279 * 2 1 3 5 5 N 1.46502 * 109.46929 * 175.00190 * 4 2 1 6 6 C 1.34777 * 119.99709 * 179.97438 * 5 4 2 7 7 O 1.21587 * 120.00246 * 359.97438 * 6 5 4 8 8 C 1.47642 * 119.99735 * 179.97438 * 6 5 4 9 9 C 1.40010 * 119.89811 * 359.72803 * 8 6 5 10 10 C 1.36319 * 120.10893 * 179.75645 * 9 8 6 11 11 C 1.40894 * 119.88977 * 0.51402 * 10 9 8 12 12 C 1.41102 * 120.10328 * 179.71648 * 11 10 9 13 13 H 1.07998 * 120.00323 * 204.65303 * 12 11 10 14 14 C 1.40229 * 120.00114 * 24.65101 * 12 11 10 15 15 N 1.30642 * 119.99611 * 17.86491 * 14 12 11 16 16 Si 1.86798 * 119.99971 * 197.86544 * 14 12 11 17 17 H 1.48504 * 109.47263 * 90.00213 * 16 14 12 18 18 H 1.48499 * 109.47027 * 209.99960 * 16 14 12 19 19 H 1.48499 * 109.47480 * 330.00228 * 16 14 12 20 20 C 1.40894 * 119.79260 * 359.73907 * 11 10 9 21 21 C 1.36320 * 119.89187 * 359.97438 * 20 11 10 22 22 N 1.46906 * 109.47196 * 239.99838 * 2 1 3 23 23 C 1.46844 * 111.00031 * 295.79318 * 22 2 1 24 24 C 1.53036 * 109.52401 * 185.83806 * 23 22 2 25 25 C 1.53112 * 109.27760 * 300.82120 * 24 23 22 26 26 C 1.53004 * 109.52474 * 177.56195 * 25 24 23 27 27 C 1.53121 * 109.16419 * 57.65208 * 25 24 23 28 28 C 1.46842 * 110.99734 * 59.99853 * 22 2 1 29 29 H 1.09000 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47359 * 299.99740 * 1 2 3 31 31 H 1.09001 * 109.46975 * 60.00142 * 1 2 3 32 32 H 1.08997 * 109.47663 * 54.99930 * 4 2 1 33 33 H 1.08998 * 109.46688 * 294.99621 * 4 2 1 34 34 H 0.96994 * 120.00397 * 359.71800 * 5 4 2 35 35 H 1.08001 * 119.94429 * 0.02562 * 9 8 6 36 36 H 1.07995 * 120.05647 * 180.22981 * 10 9 8 37 37 H 0.97007 * 120.00058 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.05318 * 179.97438 * 20 11 10 39 39 H 1.07994 * 119.94717 * 179.97438 * 21 20 11 40 40 H 1.09009 * 109.46209 * 305.85484 * 23 22 2 41 41 H 1.08998 * 109.46490 * 65.81754 * 23 22 2 42 42 H 1.09005 * 109.50417 * 180.87484 * 24 23 22 43 43 H 1.09002 * 109.50090 * 60.75788 * 24 23 22 44 44 H 1.09006 * 109.52264 * 297.74828 * 25 24 23 45 45 H 1.09005 * 109.46471 * 300.31477 * 26 25 24 46 46 H 1.08998 * 109.47267 * 60.30906 * 26 25 24 47 47 H 1.09001 * 109.47229 * 180.32061 * 26 25 24 48 48 H 1.09001 * 109.50073 * 182.40613 * 27 25 24 49 49 H 1.08997 * 109.50091 * 62.28764 * 27 25 24 50 50 H 1.09003 * 109.46662 * 294.17702 * 28 22 2 51 51 H 1.09010 * 109.46332 * 54.15033 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4283 2.1912 7 8 3.5685 -1.8837 3.1427 8 6 5.6444 -1.5347 2.1318 9 6 6.3379 -1.0147 1.0323 10 6 7.6968 -1.1061 0.9754 11 6 8.4026 -1.7349 2.0202 12 6 9.8088 -1.8374 1.9630 13 1 10.3156 -2.6217 2.5055 14 6 10.5482 -0.9209 1.2017 15 7 10.0077 0.2110 0.8363 16 14 12.3059 -1.3184 0.7100 17 1 12.3069 -2.0252 -0.5960 18 1 13.0837 -0.0589 0.5917 19 1 12.9246 -2.1871 1.7434 20 6 7.6999 -2.2615 3.1220 21 6 6.3414 -2.1600 3.1728 22 7 2.0197 -0.6926 -1.1995 23 6 1.6327 -2.1090 -1.1841 24 6 2.2800 -2.8289 -2.3694 25 6 1.8216 -2.1693 -3.6730 26 6 2.5126 -2.8456 -4.8588 27 6 2.1936 -0.6843 -3.6428 28 6 1.5488 -0.0267 -2.4206 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7199 1.2952 33 1 1.7516 -0.1584 2.1369 34 1 3.9821 -0.4661 0.4299 35 1 5.7957 -0.5364 0.2300 36 1 8.2312 -0.7014 0.1286 37 1 10.5193 0.8452 0.3100 38 1 8.2366 -2.7447 3.9250 39 1 5.8018 -2.5637 4.0167 40 1 1.9683 -2.5672 -0.2537 41 1 0.5483 -2.1901 -1.2581 42 1 1.9800 -3.8769 -2.3666 43 1 3.3648 -2.7600 -2.2886 44 1 0.7410 -2.2722 -3.7729 45 1 3.5930 -2.7442 -4.7557 46 1 2.2473 -3.9026 -4.8794 47 1 2.1901 -2.3717 -5.7858 48 1 1.8319 -0.2001 -4.5499 49 1 3.2770 -0.5818 -3.5821 50 1 0.4647 -0.1175 -2.4889 51 1 1.8235 1.0277 -2.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270256534.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:18 Heat of formation + Delta-G solvation = -37.267083 kcal Electronic energy + Delta-G solvation = -28614.598550 eV Core-core repulsion = 24898.243851 eV Total energy + Delta-G solvation = -3716.354699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.97740 -38.77200 -37.08429 -36.05365 -33.81003 -33.46695 -31.15831 -30.95271 -30.01103 -29.37258 -27.37010 -26.77673 -25.18764 -23.42084 -22.73430 -21.73125 -20.91242 -20.48782 -19.42150 -19.28630 -17.46964 -16.80134 -16.42421 -15.63780 -15.35531 -14.93105 -14.84352 -14.61024 -14.41078 -14.12557 -13.94790 -13.72262 -13.28995 -13.15805 -12.93751 -12.83812 -12.62136 -12.53935 -12.29702 -12.02964 -11.94176 -11.84960 -11.76980 -11.56497 -11.35849 -11.27925 -11.23869 -10.91109 -10.83903 -10.77539 -10.59001 -10.37306 -10.24515 -9.98518 -9.50101 -9.30118 -8.88686 -8.45904 -8.34828 -7.65093 -7.47696 -6.98492 -4.54991 2.30680 2.95064 2.98710 3.00865 3.09919 3.65310 3.77661 3.95099 4.02888 4.57177 4.63147 4.64394 4.67553 4.72496 4.98012 5.13027 5.15486 5.15942 5.26391 5.37594 5.46982 5.51766 5.52612 5.55201 5.59212 5.63847 5.71671 5.74802 5.83061 5.84974 5.94189 6.00931 6.04271 6.08643 6.12912 6.15148 6.25287 6.35098 6.38108 6.82791 6.88039 6.95293 7.02687 7.06961 7.18599 7.20155 7.49930 7.73255 7.87145 7.92217 8.13093 8.41048 8.46083 8.68759 8.81508 9.19777 9.93567 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011664 B = 0.003051 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.965271 B = 9174.656863 C =10667.270669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.068 3.932 3 H 0.090 0.910 4 C 0.131 3.869 5 N -0.729 5.729 6 C 0.570 3.430 7 O -0.582 6.582 8 C -0.281 4.281 9 C -0.060 4.060 10 C -0.179 4.179 11 C 0.129 3.871 12 C -0.445 4.445 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.773 5.773 16 Si 0.913 3.087 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.240 4.240 21 C -0.023 4.023 22 N -0.527 5.527 23 C 0.050 3.950 24 C -0.112 4.112 25 C -0.093 4.093 26 C -0.146 4.146 27 C -0.112 4.112 28 C 0.055 3.945 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.405 0.595 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.034 0.966 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 0.733 -10.971 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.041 4.041 3 H 0.108 0.892 4 C 0.006 3.994 5 N -0.383 5.383 6 C 0.364 3.636 7 O -0.465 6.465 8 C -0.285 4.285 9 C -0.079 4.079 10 C -0.198 4.198 11 C 0.126 3.874 12 C -0.473 4.473 13 H 0.102 0.898 14 C -0.146 4.146 15 N -0.396 5.396 16 Si 0.736 3.264 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.183 1.183 20 C -0.259 4.259 21 C -0.043 4.043 22 N -0.251 5.251 23 C -0.077 4.077 24 C -0.150 4.150 25 C -0.111 4.111 26 C -0.204 4.204 27 C -0.150 4.150 28 C -0.073 4.073 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.052 0.948 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.897 0.680 -10.427 17.387 hybrid contribution 0.050 0.170 -0.638 0.662 sum -13.847 0.851 -11.065 17.746 Atomic orbital electron populations 1.22382 0.96829 1.02486 1.02542 1.21992 0.93133 0.98868 0.90060 0.89231 1.21229 0.82342 0.99936 0.95877 1.45748 1.06008 1.61932 1.24586 1.18593 0.88126 0.75971 0.80902 1.90621 1.70798 1.50698 1.34401 1.18921 0.90235 1.17908 1.01481 1.20501 0.94801 0.97216 0.95397 1.20971 0.92345 1.06242 1.00232 1.17779 0.93215 0.87273 0.89168 1.19837 0.91878 1.11362 1.24236 0.89804 1.26077 1.01343 0.93687 0.93483 1.69750 1.38851 1.05245 1.25743 0.86228 0.80836 0.79126 0.80181 1.18967 1.20065 1.18327 1.20712 0.93455 1.11976 0.99792 1.20359 0.93784 0.94437 0.95694 1.62091 1.59496 1.02286 1.01243 1.22171 0.97305 0.88447 0.99809 1.21651 1.01925 0.98311 0.93115 1.21171 0.99543 0.95228 0.95170 1.21814 1.01020 1.00151 0.97392 1.21655 1.01934 0.94814 0.96577 1.22089 0.97071 0.98322 0.89789 0.92198 0.91672 0.92084 0.92196 0.91814 0.75848 0.89133 0.86270 0.90317 0.88504 0.88237 0.89945 0.95024 0.91802 0.90652 0.91971 0.92346 0.92863 0.92982 0.91870 0.90776 0.94830 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.51 37.16 0.32 -1.30 16 2 C 0.07 0.73 2.58 -67.71 -0.17 0.56 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.13 1.84 4.51 -4.04 -0.02 1.82 16 5 N -0.73 -12.42 5.34 -61.31 -0.33 -12.75 16 6 C 0.57 12.32 7.76 -12.42 -0.10 12.22 16 7 O -0.58 -14.09 16.32 5.29 0.09 -14.00 16 8 C -0.28 -6.54 5.89 -104.73 -0.62 -7.15 16 9 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 10 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 11 C 0.13 3.32 5.58 -106.80 -0.60 2.73 16 12 C -0.45 -11.22 9.04 -37.75 -0.34 -11.56 16 13 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 14 C 0.08 1.77 5.14 -17.31 -0.09 1.68 16 15 N -0.77 -18.69 10.95 55.56 0.61 -18.09 16 16 Si 0.91 17.46 29.60 -169.99 -5.03 12.43 16 17 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 20 C -0.24 -5.91 9.73 -39.27 -0.38 -6.29 16 21 C -0.02 -0.57 9.52 -39.60 -0.38 -0.94 16 22 N -0.53 -5.71 4.12 -226.68 -0.93 -6.64 16 23 C 0.05 0.56 4.67 -3.84 -0.02 0.54 16 24 C -0.11 -1.18 5.38 -26.65 -0.14 -1.32 16 25 C -0.09 -0.83 2.79 -90.50 -0.25 -1.08 16 26 C -0.15 -1.22 9.20 37.16 0.34 -0.88 16 27 C -0.11 -1.00 5.38 -26.65 -0.14 -1.15 16 28 C 0.06 0.51 4.89 -3.84 -0.02 0.49 16 29 H 0.06 0.54 6.63 -51.93 -0.34 0.20 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 32 H 0.06 0.88 6.51 -51.93 -0.34 0.54 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 6.56 6.14 -40.82 -0.25 6.31 16 35 H 0.09 1.78 6.37 -52.49 -0.33 1.45 16 36 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 37 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 38 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 40 H 0.08 1.08 6.01 -51.92 -0.31 0.77 16 41 H 0.03 0.33 6.71 -51.93 -0.35 -0.02 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.03 0.29 6.63 -51.93 -0.34 -0.05 16 51 H 0.07 0.65 8.12 -51.92 -0.42 0.23 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -27.89 393.60 -11.37 -39.26 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -8.38 Total: 12.00 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.32 Total: -18.14 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.65 Total: -37.48 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.00 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.89 -11.37 -39.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270256534.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.996 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds