Wall clock time and date at job start Tue Mar 31 2020 16:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47006 * 2 1 4 4 C 1.52994 * 109.46973 * 240.00336 * 2 1 3 5 5 N 1.46499 * 109.47159 * 183.67929 * 4 2 1 6 6 C 1.34772 * 120.00293 * 184.68649 * 5 4 2 7 7 O 1.21581 * 120.00295 * 359.97438 * 6 5 4 8 8 C 1.47650 * 120.00240 * 179.97438 * 6 5 4 9 9 C 1.40011 * 119.89299 * 359.72609 * 8 6 5 10 10 C 1.36312 * 120.10498 * 179.71878 * 9 8 6 11 11 C 1.40885 * 119.89204 * 0.57603 * 10 9 8 12 12 C 1.41110 * 120.10425 * 179.67614 * 11 10 9 13 13 H 1.08000 * 119.99855 * 208.55248 * 12 11 10 14 14 C 1.40223 * 119.99920 * 28.55591 * 12 11 10 15 15 N 1.30645 * 120.00188 * 11.47300 * 14 12 11 16 16 Si 1.86801 * 119.99804 * 191.46874 * 14 12 11 17 17 H 1.48500 * 109.47121 * 60.00161 * 16 14 12 18 18 H 1.48504 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47567 * 299.99745 * 16 14 12 20 20 C 1.40888 * 119.79347 * 359.69712 * 11 10 9 21 21 C 1.36315 * 119.88994 * 359.97438 * 20 11 10 22 22 N 1.46894 * 109.47025 * 120.00207 * 2 1 3 23 23 C 1.46849 * 111.00113 * 59.31435 * 22 2 1 24 24 C 1.53040 * 109.52472 * 174.16027 * 23 22 2 25 25 C 1.53117 * 109.27800 * 59.17850 * 24 23 22 26 26 C 1.53000 * 109.52480 * 182.44024 * 25 24 23 27 27 C 1.53118 * 109.16237 * 302.34925 * 25 24 23 28 28 C 1.46850 * 111.00100 * 295.10757 * 22 2 1 29 29 H 1.09003 * 109.47376 * 59.99719 * 1 2 3 30 30 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47107 * 299.99555 * 1 2 3 32 32 H 1.08999 * 109.47393 * 303.67612 * 4 2 1 33 33 H 1.08997 * 109.47437 * 63.67751 * 4 2 1 34 34 H 0.97007 * 120.00099 * 4.68126 * 5 4 2 35 35 H 1.08010 * 119.94640 * 359.97438 * 9 8 6 36 36 H 1.08006 * 120.05704 * 180.24581 * 10 9 8 37 37 H 0.97004 * 119.99772 * 180.02562 * 15 14 12 38 38 H 1.08000 * 120.05138 * 179.97438 * 20 11 10 39 39 H 1.07999 * 119.94821 * 180.02562 * 21 20 11 40 40 H 1.08996 * 109.46117 * 54.14525 * 23 22 2 41 41 H 1.09001 * 109.46410 * 294.17400 * 23 22 2 42 42 H 1.09006 * 109.50394 * 299.24258 * 24 23 22 43 43 H 1.08998 * 109.50435 * 179.12159 * 24 23 22 44 44 H 1.09003 * 109.52140 * 62.25432 * 25 24 23 45 45 H 1.09006 * 109.47012 * 60.00247 * 26 25 24 46 46 H 1.08993 * 109.47611 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.46994 * 300.00425 * 26 25 24 48 48 H 1.09000 * 109.50428 * 177.59963 * 27 25 24 49 49 H 1.09005 * 109.50258 * 297.70821 * 27 25 24 50 50 H 1.09005 * 109.45706 * 305.85289 * 28 22 2 51 51 H 1.08999 * 109.46369 * 65.82090 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5023 -0.7984 -1.2058 6 6 4.1814 -1.3104 -2.2512 7 8 3.5806 -1.7086 -3.2303 8 6 5.6553 -1.3877 -2.2077 9 6 6.3454 -0.9233 -1.0815 10 6 7.7057 -0.9978 -1.0343 11 6 8.4179 -1.5322 -2.1261 12 6 9.8265 -1.6052 -2.0848 13 1 10.3965 -1.5613 -3.0011 14 6 10.4860 -1.7349 -0.8542 15 7 9.8052 -2.0123 0.2258 16 14 12.3381 -1.5111 -0.7591 17 1 12.6956 -0.1439 -1.2154 18 1 12.7881 -1.6987 0.6437 19 1 13.0033 -2.5133 -1.6298 20 6 7.7193 -1.9930 -3.2595 21 6 6.3586 -1.9205 -3.2948 22 7 2.0197 -0.6925 1.1994 23 6 1.5354 -2.0782 1.2415 24 6 2.1797 -2.8095 2.4214 25 6 1.8221 -2.0844 3.7218 26 6 2.5131 -2.7753 4.8991 27 6 2.2942 -0.6306 3.6327 28 6 1.6466 0.0375 2.4177 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6238 -1.7280 -1.2829 33 1 1.7315 -0.1707 -2.1380 34 1 3.9818 -0.4810 -0.4245 35 1 5.7988 -0.5090 -0.2471 36 1 8.2370 -0.6429 -0.1635 37 1 10.2615 -2.1016 1.0772 38 1 8.2611 -2.4031 -4.0990 39 1 5.8221 -2.2739 -4.1629 40 1 1.8000 -2.5837 0.3128 41 1 0.4520 -2.0809 1.3605 42 1 3.2625 -2.8192 2.2962 43 1 1.8082 -3.8335 2.4617 44 1 0.7421 -2.1085 3.8670 45 1 3.5930 -2.7478 4.7536 46 1 2.2583 -2.2583 5.8242 47 1 2.1806 -3.8117 4.9582 48 1 2.0046 -0.0978 4.5385 49 1 3.3788 -0.6060 3.5266 50 1 1.9920 1.0687 2.3432 51 1 0.5626 0.0249 2.5311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270256538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:20 Heat of formation + Delta-G solvation = -52.165341 kcal Electronic energy + Delta-G solvation = -28591.780943 eV Core-core repulsion = 24874.780207 eV Total energy + Delta-G solvation = -3717.000736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.04853 -40.26675 -38.85652 -37.06567 -35.60949 -34.82050 -32.36008 -31.74798 -31.52293 -31.26559 -28.26457 -28.11399 -26.66396 -24.28080 -23.72759 -23.30297 -22.72532 -21.44680 -21.04603 -20.15622 -19.33006 -18.36486 -17.40761 -17.26290 -16.85283 -15.98118 -15.73237 -15.71543 -15.62103 -15.42228 -15.30743 -15.00602 -14.88884 -14.42337 -14.20540 -13.93494 -13.84317 -13.67309 -13.55620 -13.31981 -13.24696 -13.14303 -12.82784 -12.69679 -12.62955 -12.57078 -12.38824 -12.33951 -12.17692 -11.74908 -11.67305 -11.53695 -11.34117 -11.14238 -11.11565 -11.06586 -10.67898 -9.96738 -9.54700 -9.32560 -9.17725 -8.71276 -6.47285 0.46764 1.16292 1.40672 1.45936 1.52994 2.16149 2.21395 2.45429 2.83644 2.96050 3.69622 3.71602 3.86657 3.89316 3.94242 4.12468 4.28151 4.31613 4.36329 4.38773 4.40237 4.46313 4.48024 4.59929 4.63150 4.72374 4.79286 4.80989 4.85005 4.86356 4.94530 4.96061 5.04789 5.05008 5.06432 5.18201 5.18774 5.24839 5.30320 5.31466 5.32593 5.35509 5.58226 5.61215 5.66766 5.84551 5.97750 6.01983 6.17031 6.22433 6.25820 6.57382 6.80231 6.81869 6.91620 7.50835 8.23130 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.003114 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.515075 B = 8989.323623 C =10788.513635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.097 0.903 4 C 0.130 3.870 5 N -0.710 5.710 6 C 0.568 3.432 7 O -0.611 6.611 8 C -0.285 4.285 9 C -0.053 4.053 10 C -0.190 4.190 11 C 0.103 3.897 12 C -0.480 4.480 13 H 0.084 0.916 14 C 0.036 3.964 15 N -0.808 5.808 16 Si 0.989 3.011 17 H -0.258 1.258 18 H -0.265 1.265 19 H -0.260 1.260 20 C -0.250 4.250 21 C -0.036 4.036 22 N -0.542 5.542 23 C 0.055 3.945 24 C -0.112 4.112 25 C -0.088 4.088 26 C -0.145 4.145 27 C -0.111 4.111 28 C 0.057 3.943 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.295 0.705 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.056 0.944 50 H 0.080 0.920 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 4.259 11.557 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.032 4.032 3 H 0.115 0.885 4 C 0.006 3.994 5 N -0.362 5.362 6 C 0.361 3.639 7 O -0.496 6.496 8 C -0.290 4.290 9 C -0.072 4.072 10 C -0.210 4.210 11 C 0.100 3.900 12 C -0.507 4.507 13 H 0.102 0.898 14 C -0.182 4.182 15 N -0.432 5.432 16 Si 0.809 3.191 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.185 1.185 20 C -0.269 4.269 21 C -0.056 4.056 22 N -0.267 5.267 23 C -0.072 4.072 24 C -0.150 4.150 25 C -0.106 4.106 26 C -0.202 4.202 27 C -0.148 4.148 28 C -0.070 4.070 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.248 0.752 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.075 0.925 50 H 0.098 0.902 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.736 3.928 11.155 18.895 hybrid contribution 0.238 -0.167 0.109 0.310 sum -14.498 3.761 11.264 18.741 Atomic orbital electron populations 1.22311 0.94879 1.02724 1.03577 1.21893 0.94494 0.98319 0.88462 0.88513 1.21415 0.79910 1.00138 0.97909 1.45618 1.07294 1.63902 1.19366 1.18411 0.87600 0.75896 0.81983 1.90600 1.71421 1.52506 1.35069 1.19247 0.91474 1.19073 0.99167 1.20714 0.94309 0.96679 0.95487 1.21035 0.93392 1.05742 1.00794 1.18133 0.94165 0.86381 0.91334 1.20059 0.92143 1.43842 0.94703 0.89799 1.26889 1.06222 0.90975 0.94068 1.69749 1.40808 1.31474 1.01142 0.85143 0.75101 0.80159 0.78732 1.18178 1.18870 1.18459 1.20906 0.93626 1.11049 1.01327 1.20512 0.93812 0.94974 0.96273 1.62043 1.60198 1.02233 1.02189 1.22066 0.97462 0.89086 0.98626 1.21639 1.00542 0.98668 0.94157 1.21137 1.00120 0.95076 0.94279 1.21797 1.00183 1.00456 0.97814 1.21649 1.00625 0.95163 0.97399 1.22125 0.98377 0.97695 0.88825 0.91011 0.92347 0.90680 0.93021 0.91863 0.75173 0.86246 0.86802 0.89435 0.87755 0.87954 0.92468 0.93555 0.93118 0.91367 0.90845 0.93619 0.91742 0.92574 0.90136 0.92539 0.90178 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.50 71.98 0.61 -1.99 16 2 C 0.08 1.49 2.51 44.92 0.11 1.60 16 3 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 4 C 0.13 3.52 4.72 86.38 0.41 3.93 16 5 N -0.71 -23.79 5.37 -466.18 -2.50 -26.29 16 6 C 0.57 24.63 7.76 86.73 0.67 25.31 16 7 O -0.61 -29.80 16.32 -3.97 -0.06 -29.87 16 8 C -0.29 -13.40 5.89 -19.93 -0.12 -13.52 16 9 C -0.05 -2.40 9.47 22.25 0.21 -2.19 16 10 C -0.19 -9.63 8.60 22.47 0.19 -9.44 16 11 C 0.10 5.46 5.55 -21.28 -0.12 5.34 16 12 C -0.48 -24.72 9.05 23.46 0.21 -24.51 16 13 H 0.08 4.13 7.88 -2.91 -0.02 4.11 16 14 C 0.04 1.71 5.24 85.35 0.45 2.16 16 15 N -0.81 -39.53 10.85 21.87 0.24 -39.29 16 16 Si 0.99 35.63 29.58 68.60 2.03 37.66 16 17 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 18 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 19 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 20 C -0.25 -12.66 9.73 22.47 0.22 -12.45 16 21 C -0.04 -1.80 9.52 22.25 0.21 -1.59 16 22 N -0.54 -10.82 4.09 -871.13 -3.56 -14.38 16 23 C 0.06 1.15 4.63 86.33 0.40 1.55 16 24 C -0.11 -2.29 5.38 30.65 0.16 -2.13 16 25 C -0.09 -1.44 2.79 -10.72 -0.03 -1.47 16 26 C -0.15 -2.29 9.20 71.98 0.66 -1.63 16 27 C -0.11 -1.79 5.38 30.65 0.16 -1.62 16 28 C 0.06 0.90 5.02 86.32 0.43 1.34 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.91 6.53 -2.39 -0.02 0.90 16 31 H 0.07 0.92 6.65 -2.39 -0.02 0.91 16 32 H 0.05 1.50 6.49 -2.39 -0.02 1.48 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 12.87 6.12 -92.70 -0.57 12.30 16 35 H 0.12 4.60 6.37 -2.91 -0.02 4.58 16 36 H 0.11 5.87 6.21 -2.91 -0.02 5.85 16 37 H 0.29 12.91 8.29 -92.71 -0.77 12.14 16 38 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 39 H 0.10 4.90 7.63 -2.91 -0.02 4.88 16 40 H 0.06 1.45 6.11 -2.39 -0.01 1.44 16 41 H 0.05 0.84 6.62 -2.39 -0.02 0.82 16 42 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.08 1.18 8.08 -2.38 -0.02 1.16 16 51 H 0.05 0.63 6.73 -2.39 -0.02 0.61 16 Total: -1.00 -61.11 393.73 1.35 -59.76 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: 0.35 Total: 43.71 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 4.86 Total: -31.31 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -5.83 Total: -79.95 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.06 Total: -29.87 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Total: -61.11 1.35 -59.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270256538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.597 kcal (2) G-P(sol) polarization free energy of solvation -61.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds