Wall clock time and date at job start Tue Mar 31 2020 16:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 110.77726 * 2 1 4 4 C 1.53005 * 109.47152 * 298.21311 * 3 2 1 5 5 C 1.50701 * 109.47151 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99958 * 269.72892 * 5 4 3 7 7 C 1.38236 * 119.99424 * 179.74440 * 6 5 4 8 8 C 1.38231 * 120.00405 * 0.54633 * 7 6 5 9 9 C 1.38237 * 119.99708 * 359.70518 * 8 7 6 10 10 C 1.38230 * 120.00095 * 0.02562 * 9 8 7 11 11 C 1.55157 * 110.71702 * 123.23713 * 2 1 3 12 12 C 1.55128 * 101.48575 * 82.69803 * 11 2 1 13 13 N 1.47423 * 104.72028 * 37.29275 * 12 11 2 14 14 C 1.34781 * 125.64254 * 155.81511 * 13 12 11 15 15 O 1.21593 * 119.99684 * 179.68683 * 14 13 12 16 16 N 1.34770 * 120.00528 * 359.69589 * 14 13 12 17 17 C 1.46493 * 120.00393 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47400 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 C 1.47019 * 108.70736 * 335.55338 * 13 12 11 28 28 H 1.08999 * 109.46548 * 181.78308 * 1 2 3 29 29 H 1.08998 * 109.47077 * 301.78428 * 1 2 3 30 30 H 1.08997 * 109.47018 * 61.78891 * 1 2 3 31 31 H 1.09005 * 109.47112 * 58.21419 * 3 2 1 32 32 H 1.09003 * 109.46996 * 178.21325 * 3 2 1 33 33 H 1.08998 * 109.46884 * 300.00191 * 4 3 2 34 34 H 1.08994 * 109.47138 * 60.00322 * 4 3 2 35 35 H 1.07998 * 119.99528 * 359.97438 * 6 5 4 36 36 H 1.08007 * 119.99538 * 180.27427 * 7 6 5 37 37 H 1.08004 * 119.99898 * 179.72497 * 8 7 6 38 38 H 1.08003 * 119.99287 * 179.97438 * 9 8 7 39 39 H 1.08007 * 119.99802 * 179.97438 * 10 9 8 40 40 H 1.09003 * 111.00025 * 200.94120 * 11 2 1 41 41 H 1.09001 * 111.00512 * 324.78669 * 11 2 1 42 42 H 1.08998 * 110.49499 * 278.45150 * 12 11 2 43 43 H 1.09000 * 110.34449 * 156.05571 * 12 11 2 44 44 H 0.97000 * 119.99567 * 359.97438 * 16 14 13 45 45 H 1.09004 * 109.46794 * 59.99777 * 17 16 14 46 46 H 1.09000 * 109.47559 * 300.00254 * 17 16 14 47 47 H 1.09004 * 109.47066 * 60.00265 * 18 17 16 48 48 H 1.08994 * 109.47405 * 300.00096 * 18 17 16 49 49 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.88419 * 120.69970 * 27 13 12 51 51 H 1.08998 * 109.88202 * 241.71658 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 1.6161 2.1492 -1.2712 5 6 2.1513 3.5580 -1.2715 6 6 1.4081 4.5798 -0.7105 7 6 1.9014 5.8712 -0.7061 8 6 3.1326 6.1427 -1.2727 9 6 3.8734 5.1218 -1.8383 10 6 3.3827 3.8295 -1.8377 11 6 2.0790 -0.7954 1.2138 12 6 2.0075 -2.2525 0.6862 13 7 2.3717 -2.1531 -0.7389 14 6 2.8851 -3.1478 -1.4896 15 8 3.1438 -2.9534 -2.6617 16 7 3.1117 -4.3579 -0.9412 17 6 3.6692 -5.4392 -1.7573 18 6 3.8270 -6.6962 -0.8995 19 6 4.4011 -7.8083 -1.7389 20 1 4.6310 -7.6357 -2.7800 21 6 4.6389 -9.0445 -1.1762 22 7 5.1450 -10.0134 -1.9074 23 14 4.2419 -9.3429 0.6245 24 1 2.8449 -9.8308 0.7492 25 1 5.1727 -10.3610 1.1745 26 1 4.3925 -8.0742 1.3815 27 6 2.0761 -0.7912 -1.2072 28 1 -0.3632 -1.0272 0.0320 29 1 -0.3633 0.5413 0.8735 30 1 -0.3633 0.4858 -0.9056 31 1 1.6956 1.9622 0.8736 32 1 3.1621 1.4058 0.0320 33 1 1.9934 1.6175 -2.1446 34 1 0.5269 2.1739 -1.3032 35 1 0.4438 4.3684 -0.2724 36 1 1.3227 6.6687 -0.2638 37 1 3.5160 7.1524 -1.2731 38 1 4.8352 5.3341 -2.2813 39 1 3.9613 3.0320 -2.2800 40 1 3.1061 -0.5072 1.4376 41 1 1.4396 -0.6662 2.0871 42 1 0.9974 -2.6479 0.7929 43 1 2.7208 -2.8831 1.2169 44 1 2.9055 -4.5128 -0.0061 45 1 4.6434 -5.1381 -2.1427 46 1 2.9981 -5.6490 -2.5901 47 1 2.8530 -6.9974 -0.5138 48 1 4.4984 -6.4861 -0.0670 49 1 5.3119 -10.8831 -1.5116 50 1 2.9869 -0.3206 -1.5774 51 1 1.3284 -0.8258 -1.9996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273611669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:32 Heat of formation + Delta-G solvation = -24.605812 kcal Electronic energy + Delta-G solvation = -27435.142078 eV Core-core repulsion = 23719.336413 eV Total energy + Delta-G solvation = -3715.805665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50699 -39.57877 -38.35666 -35.02174 -34.86204 -32.86683 -32.39553 -31.20797 -30.11516 -29.88916 -28.39404 -26.94235 -25.23699 -24.08801 -22.90780 -22.87754 -21.20775 -20.79556 -19.79199 -19.16018 -17.76173 -17.07175 -16.87766 -16.40982 -15.75235 -15.52461 -15.41973 -14.78684 -14.64656 -14.29899 -14.16877 -13.97739 -13.73441 -13.67507 -13.53462 -13.20462 -12.94580 -12.84113 -12.72468 -12.60373 -12.45823 -12.21418 -11.99269 -11.62591 -11.50914 -11.45179 -11.24911 -11.18100 -10.82149 -10.79990 -10.74674 -10.36983 -10.23215 -9.95973 -9.73033 -9.30738 -9.24727 -8.99077 -8.75683 -8.60286 -8.24985 -6.09492 -4.09293 1.02965 1.07501 2.84240 3.25872 3.33320 3.34743 3.44775 3.52479 4.05871 4.23110 4.29654 4.38872 4.43059 4.51467 4.59717 4.68760 4.78919 4.85433 4.93690 4.98200 5.07532 5.14741 5.21231 5.23388 5.27145 5.30403 5.35664 5.45196 5.53646 5.57417 5.67272 5.70532 5.73830 5.76829 5.77352 5.81320 5.92230 6.05503 6.08481 6.15040 6.19694 6.27240 6.32495 6.35336 6.60529 6.68884 6.84878 7.12739 7.26662 7.34223 7.69205 8.27835 8.47262 8.92730 8.96166 9.50647 11.03577 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.001883 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.127309 B =14866.869694 C =15396.716918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 C -0.094 4.094 4 C -0.087 4.087 5 C -0.078 4.078 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.128 4.128 9 C -0.118 4.118 10 C -0.117 4.117 11 C -0.122 4.122 12 C 0.099 3.901 13 N -0.641 5.641 14 C 0.717 3.283 15 O -0.592 6.592 16 N -0.740 5.740 17 C 0.148 3.852 18 C -0.021 4.021 19 C -0.522 4.522 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.898 5.898 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.267 1.267 27 C 0.138 3.862 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.391 0.609 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.021 0.979 49 H 0.264 0.736 50 H 0.065 0.935 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 32.075 8.813 34.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.075 4.075 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.078 4.078 6 C -0.137 4.137 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.136 4.136 10 C -0.135 4.135 11 C -0.160 4.160 12 C -0.024 4.024 13 N -0.381 5.381 14 C 0.419 3.581 15 O -0.470 6.470 16 N -0.394 5.394 17 C 0.025 3.975 18 C -0.059 4.059 19 C -0.560 4.560 20 H 0.094 0.906 21 C -0.133 4.133 22 N -0.537 5.537 23 Si 0.709 3.291 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.191 1.191 27 C 0.015 3.985 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.224 0.776 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.035 0.965 48 H 0.039 0.961 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.542 31.908 7.856 34.218 hybrid contribution -0.221 -0.394 1.402 1.473 sum -9.762 31.514 9.258 34.266 Atomic orbital electron populations 1.21868 0.93326 1.02310 1.02110 1.21648 0.96161 0.94675 0.94971 1.21539 1.00970 0.93088 0.97560 1.20754 1.01202 0.91494 0.99010 1.19945 0.94650 0.95552 0.97628 1.21059 0.99888 0.92677 1.00063 1.21144 0.96190 0.96737 0.99751 1.21147 0.95218 0.99165 0.99097 1.21177 0.99859 0.93065 0.99500 1.21136 0.95734 0.96895 0.99752 1.22905 1.02080 0.93769 0.97219 1.22299 1.00414 0.97710 0.82014 1.47560 1.68304 1.11491 1.10790 1.15543 0.78344 0.79970 0.84264 1.90907 1.59135 1.82108 1.14893 1.45537 1.68789 1.10612 1.14497 1.21382 0.97665 0.84738 0.93675 1.19792 0.96873 0.92889 0.96346 1.20923 1.42366 0.94222 0.98484 0.90568 1.24999 0.94481 0.95920 0.97892 1.69905 1.44233 1.03198 1.36339 0.86750 0.78419 0.78207 0.85676 1.20247 1.21281 1.19128 1.21817 1.00056 0.80938 0.95735 0.92213 0.92216 0.92003 0.91233 0.91347 0.90500 0.90518 0.86180 0.86257 0.86314 0.86138 0.85956 0.90345 0.89839 0.91539 0.90894 0.77612 0.92147 0.92147 0.96493 0.96074 0.92578 0.91692 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.07 37.16 0.30 -0.60 16 2 C -0.07 -0.55 0.64 -152.67 -0.10 -0.64 16 3 C -0.09 -0.62 4.16 -26.73 -0.11 -0.73 16 4 C -0.09 -0.59 4.84 -27.88 -0.13 -0.73 16 5 C -0.08 -0.60 5.13 -104.62 -0.54 -1.13 16 6 C -0.12 -0.85 9.70 -39.58 -0.38 -1.23 16 7 C -0.12 -0.83 10.05 -39.58 -0.40 -1.22 16 8 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 9 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 10 C -0.12 -0.94 9.70 -39.59 -0.38 -1.33 16 11 C -0.12 -0.88 6.04 -24.46 -0.15 -1.03 16 12 C 0.10 0.95 6.27 -2.41 -0.02 0.94 16 13 N -0.64 -8.62 3.32 -176.11 -0.59 -9.20 16 14 C 0.72 12.98 8.49 -86.92 -0.74 12.24 16 15 O -0.59 -13.16 16.67 5.28 0.09 -13.07 16 16 N -0.74 -13.15 5.51 -65.23 -0.36 -13.51 16 17 C 0.15 3.16 5.61 -4.05 -0.02 3.14 16 18 C -0.02 -0.49 4.15 -27.88 -0.12 -0.61 16 19 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 20 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 23 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 27 C 0.14 1.53 5.06 -3.07 -0.02 1.52 16 28 H 0.06 0.44 7.42 -51.93 -0.39 0.06 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 6.70 -51.93 -0.35 0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 33 H 0.08 0.58 7.09 -51.93 -0.37 0.21 16 34 H 0.08 0.46 6.57 -51.93 -0.34 0.12 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.12 0.59 8.06 -52.48 -0.42 0.16 16 37 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 41 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 42 H 0.07 0.59 7.69 -51.93 -0.40 0.19 16 43 H 0.07 0.68 7.29 -51.93 -0.38 0.30 16 44 H 0.39 5.87 6.95 -40.82 -0.28 5.59 16 45 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.02 0.38 7.58 -51.93 -0.39 -0.01 16 48 H 0.02 0.48 7.19 -51.93 -0.37 0.11 16 49 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 50 H 0.06 0.77 7.55 -51.93 -0.39 0.38 16 51 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -34.10 404.05 -11.41 -45.51 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.72 Total: 1.64 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -4.03 Total: -7.23 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.17 Total: -49.43 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.10 -11.41 -45.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273611669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.907 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds