Wall clock time and date at job start Tue Mar 31 2020 16:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 110.77726 * 2 1 4 4 C 1.53005 * 109.47152 * 298.21311 * 3 2 1 5 5 C 1.50701 * 109.47151 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99958 * 269.72892 * 5 4 3 7 7 C 1.38236 * 119.99424 * 179.74440 * 6 5 4 8 8 C 1.38231 * 120.00405 * 0.54633 * 7 6 5 9 9 C 1.38237 * 119.99708 * 359.70518 * 8 7 6 10 10 C 1.38230 * 120.00095 * 0.02562 * 9 8 7 11 11 C 1.55157 * 110.71702 * 123.23713 * 2 1 3 12 12 C 1.55128 * 101.48575 * 82.69803 * 11 2 1 13 13 N 1.47423 * 104.72028 * 37.29275 * 12 11 2 14 14 C 1.34781 * 125.64254 * 155.81511 * 13 12 11 15 15 O 1.21593 * 119.99684 * 179.68683 * 14 13 12 16 16 N 1.34770 * 120.00528 * 359.69589 * 14 13 12 17 17 C 1.46493 * 120.00393 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47400 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 C 1.47019 * 108.70736 * 335.55338 * 13 12 11 28 28 H 1.08999 * 109.46548 * 181.78308 * 1 2 3 29 29 H 1.08998 * 109.47077 * 301.78428 * 1 2 3 30 30 H 1.08997 * 109.47018 * 61.78891 * 1 2 3 31 31 H 1.09005 * 109.47112 * 58.21419 * 3 2 1 32 32 H 1.09003 * 109.46996 * 178.21325 * 3 2 1 33 33 H 1.08998 * 109.46884 * 300.00191 * 4 3 2 34 34 H 1.08994 * 109.47138 * 60.00322 * 4 3 2 35 35 H 1.07998 * 119.99528 * 359.97438 * 6 5 4 36 36 H 1.08007 * 119.99538 * 180.27427 * 7 6 5 37 37 H 1.08004 * 119.99898 * 179.72497 * 8 7 6 38 38 H 1.08003 * 119.99287 * 179.97438 * 9 8 7 39 39 H 1.08007 * 119.99802 * 179.97438 * 10 9 8 40 40 H 1.09003 * 111.00025 * 200.94120 * 11 2 1 41 41 H 1.09001 * 111.00512 * 324.78669 * 11 2 1 42 42 H 1.08998 * 110.49499 * 278.45150 * 12 11 2 43 43 H 1.09000 * 110.34449 * 156.05571 * 12 11 2 44 44 H 0.97000 * 119.99567 * 359.97438 * 16 14 13 45 45 H 1.09004 * 109.46794 * 59.99777 * 17 16 14 46 46 H 1.09000 * 109.47559 * 300.00254 * 17 16 14 47 47 H 1.09004 * 109.47066 * 60.00265 * 18 17 16 48 48 H 1.08994 * 109.47405 * 300.00096 * 18 17 16 49 49 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.88419 * 120.69970 * 27 13 12 51 51 H 1.08998 * 109.88202 * 241.71658 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 1.6161 2.1492 -1.2712 5 6 2.1513 3.5580 -1.2715 6 6 1.4081 4.5798 -0.7105 7 6 1.9014 5.8712 -0.7061 8 6 3.1326 6.1427 -1.2727 9 6 3.8734 5.1218 -1.8383 10 6 3.3827 3.8295 -1.8377 11 6 2.0790 -0.7954 1.2138 12 6 2.0075 -2.2525 0.6862 13 7 2.3717 -2.1531 -0.7389 14 6 2.8851 -3.1478 -1.4896 15 8 3.1438 -2.9534 -2.6617 16 7 3.1117 -4.3579 -0.9412 17 6 3.6692 -5.4392 -1.7573 18 6 3.8270 -6.6962 -0.8995 19 6 4.4011 -7.8083 -1.7389 20 1 4.6310 -7.6357 -2.7800 21 6 4.6389 -9.0445 -1.1762 22 7 5.1450 -10.0134 -1.9074 23 14 4.2419 -9.3429 0.6245 24 1 2.8449 -9.8308 0.7492 25 1 5.1727 -10.3610 1.1745 26 1 4.3925 -8.0742 1.3815 27 6 2.0761 -0.7912 -1.2072 28 1 -0.3632 -1.0272 0.0320 29 1 -0.3633 0.5413 0.8735 30 1 -0.3633 0.4858 -0.9056 31 1 1.6956 1.9622 0.8736 32 1 3.1621 1.4058 0.0320 33 1 1.9934 1.6175 -2.1446 34 1 0.5269 2.1739 -1.3032 35 1 0.4438 4.3684 -0.2724 36 1 1.3227 6.6687 -0.2638 37 1 3.5160 7.1524 -1.2731 38 1 4.8352 5.3341 -2.2813 39 1 3.9613 3.0320 -2.2800 40 1 3.1061 -0.5072 1.4376 41 1 1.4396 -0.6662 2.0871 42 1 0.9974 -2.6479 0.7929 43 1 2.7208 -2.8831 1.2169 44 1 2.9055 -4.5128 -0.0061 45 1 4.6434 -5.1381 -2.1427 46 1 2.9981 -5.6490 -2.5901 47 1 2.8530 -6.9974 -0.5138 48 1 4.4984 -6.4861 -0.0670 49 1 5.3119 -10.8831 -1.5116 50 1 2.9869 -0.3206 -1.5774 51 1 1.3284 -0.8258 -1.9996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273611669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:31 Heat of formation + Delta-G solvation = -44.257631 kcal Electronic energy + Delta-G solvation = -27435.994245 eV Core-core repulsion = 23719.336413 eV Total energy + Delta-G solvation = -3716.657832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53275 -40.25617 -39.38470 -36.64774 -35.79310 -34.76779 -33.31686 -31.83860 -31.72353 -30.70102 -28.96554 -27.95645 -26.52824 -25.27642 -23.67050 -23.41211 -22.67815 -21.79547 -21.08654 -19.87970 -18.97803 -18.93380 -17.61424 -17.40528 -16.91453 -16.33929 -16.23990 -16.16697 -15.88826 -15.50179 -15.21181 -15.06636 -14.87494 -14.61073 -14.25229 -14.15443 -14.13803 -13.87155 -13.55992 -13.40049 -13.35718 -13.13462 -13.03855 -12.86030 -12.59649 -12.21029 -12.17599 -12.13406 -12.03959 -11.80133 -11.76335 -11.54982 -11.46325 -11.36666 -11.33319 -11.25824 -10.78926 -10.23904 -9.78426 -9.52820 -9.48548 -8.29983 -6.37565 0.49493 0.53738 1.38851 1.41913 1.53163 1.60322 2.09699 2.37019 2.91050 3.04756 3.05715 3.46870 3.58387 3.72646 3.96891 4.05168 4.20172 4.23776 4.27962 4.31906 4.33017 4.40370 4.41969 4.44764 4.56529 4.63008 4.69035 4.73112 4.73488 4.74705 4.79601 4.94955 4.96038 5.07973 5.10451 5.13505 5.18855 5.19595 5.23001 5.25025 5.34293 5.38113 5.39264 5.43128 5.54159 5.62959 5.65257 5.67153 5.79431 6.04246 6.17876 6.22880 6.69227 6.97936 7.26739 7.53537 8.86816 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.001883 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.127309 B =14866.869694 C =15396.716918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C -0.086 4.086 4 C -0.084 4.084 5 C -0.087 4.087 6 C -0.125 4.125 7 C -0.126 4.126 8 C -0.137 4.137 9 C -0.131 4.131 10 C -0.138 4.138 11 C -0.113 4.113 12 C 0.089 3.911 13 N -0.636 5.636 14 C 0.711 3.289 15 O -0.643 6.643 16 N -0.730 5.730 17 C 0.164 3.836 18 C -0.009 4.009 19 C -0.540 4.540 20 H 0.028 0.972 21 C 0.004 3.996 22 N -0.950 5.950 23 Si 0.960 3.040 24 H -0.264 1.264 25 H -0.286 1.286 26 H -0.237 1.237 27 C 0.132 3.868 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.408 0.592 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.268 0.732 50 H 0.050 0.950 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 34.031 12.937 38.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.061 4.061 3 C -0.123 4.123 4 C -0.121 4.121 5 C -0.087 4.087 6 C -0.143 4.143 7 C -0.144 4.144 8 C -0.155 4.155 9 C -0.149 4.149 10 C -0.156 4.156 11 C -0.151 4.151 12 C -0.033 4.033 13 N -0.374 5.374 14 C 0.412 3.588 15 O -0.526 6.526 16 N -0.386 5.386 17 C 0.040 3.960 18 C -0.047 4.047 19 C -0.579 4.579 20 H 0.046 0.954 21 C -0.193 4.193 22 N -0.590 5.590 23 Si 0.782 3.218 24 H -0.189 1.189 25 H -0.212 1.212 26 H -0.160 1.160 27 C 0.009 3.991 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.135 0.865 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.244 0.756 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.582 33.919 12.034 37.808 hybrid contribution 0.426 -0.935 -0.008 1.027 sum -11.156 32.984 12.026 36.838 Atomic orbital electron populations 1.21867 0.92046 1.02242 1.03240 1.21592 0.96953 0.94437 0.93098 1.21471 1.00313 0.92516 0.98026 1.20717 1.01767 0.91023 0.98573 1.20074 0.94611 0.96150 0.97870 1.21317 1.00529 0.92593 0.99855 1.21470 0.96249 0.97326 0.99360 1.21436 0.95431 0.99853 0.98802 1.21393 1.00545 0.93118 0.99836 1.21271 0.96418 0.97248 1.00659 1.22933 1.02823 0.91578 0.97746 1.22665 1.01376 0.99854 0.79413 1.47600 1.66452 1.11031 1.12338 1.15718 0.78446 0.80636 0.83973 1.90868 1.61257 1.83042 1.17385 1.45137 1.68691 1.09826 1.14897 1.20894 0.96416 0.85335 0.93364 1.19627 0.97533 0.91642 0.95923 1.21236 1.42938 0.96435 0.97281 0.95378 1.26090 0.93976 0.95261 1.03952 1.70077 1.45756 1.03982 1.39147 0.85522 0.78557 0.79282 0.78406 1.18903 1.21156 1.15982 1.22028 0.99314 0.80248 0.97536 0.92950 0.89943 0.91995 0.89437 0.92433 0.92107 0.89342 0.84345 0.84218 0.84620 0.85254 0.86493 0.90391 0.86809 0.89973 0.90173 0.75594 0.94207 0.94124 0.94574 0.94496 0.92300 0.93176 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.07 71.99 0.58 -0.76 16 2 C -0.06 -0.75 0.64 -50.99 -0.03 -0.78 16 3 C -0.09 -0.95 4.16 30.59 0.13 -0.82 16 4 C -0.08 -1.05 4.84 29.85 0.14 -0.91 16 5 C -0.09 -1.26 5.13 -19.86 -0.10 -1.37 16 6 C -0.13 -1.54 9.70 22.27 0.22 -1.32 16 7 C -0.13 -1.49 10.05 22.27 0.22 -1.26 16 8 C -0.14 -1.76 10.05 22.27 0.22 -1.53 16 9 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 10 C -0.14 -2.26 9.70 22.27 0.22 -2.04 16 11 C -0.11 -1.24 6.04 32.06 0.19 -1.04 16 12 C 0.09 1.45 6.27 86.93 0.54 1.99 16 13 N -0.64 -16.56 3.32 -829.33 -2.76 -19.32 16 14 C 0.71 25.92 8.49 179.06 1.52 27.44 16 15 O -0.64 -29.80 16.67 -4.01 -0.07 -29.87 16 16 N -0.73 -25.42 5.51 -478.55 -2.64 -28.06 16 17 C 0.16 7.14 5.61 86.38 0.48 7.63 16 18 C -0.01 -0.43 4.15 29.85 0.12 -0.31 16 19 C -0.54 -31.44 9.66 25.60 0.25 -31.19 16 20 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 21 C 0.00 0.25 5.47 84.66 0.46 0.72 16 22 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 23 Si 0.96 42.49 27.47 68.60 1.88 44.37 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 27 C 0.13 2.89 5.06 86.73 0.44 3.33 16 28 H 0.05 0.62 7.42 -2.39 -0.02 0.60 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.62 6.70 -2.39 -0.02 0.61 16 31 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 33 H 0.06 0.95 7.09 -2.39 -0.02 0.93 16 34 H 0.09 0.89 6.57 -2.39 -0.02 0.88 16 35 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 36 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.12 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.08 0.91 8.04 -2.39 -0.02 0.89 16 41 H 0.11 0.66 8.04 -2.39 -0.02 0.64 16 42 H 0.08 1.15 7.69 -2.39 -0.02 1.13 16 43 H 0.08 1.22 7.29 -2.39 -0.02 1.21 16 44 H 0.41 11.28 6.95 -92.71 -0.64 10.63 16 45 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.04 1.53 7.58 -2.38 -0.02 1.51 16 48 H 0.04 1.58 7.19 -2.39 -0.02 1.57 16 49 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 50 H 0.05 1.24 7.55 -2.39 -0.02 1.23 16 51 H 0.05 1.28 7.85 -2.39 -0.02 1.26 16 Total: -1.00 -77.87 404.05 2.76 -75.11 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.20 Total: 21.10 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.84 Total: -3.95 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -5.10 Total: -106.76 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.07 Total: -29.87 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.37 kcal Total: -77.87 2.76 -75.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273611669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.853 kcal (2) G-P(sol) polarization free energy of solvation -77.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds