Wall clock time and date at job start Tue Mar 31 2020 16:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.28662 * 2 1 4 4 C 1.52999 * 109.47152 * 60.68463 * 3 2 1 5 5 C 1.50696 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99941 * 269.72324 * 5 4 3 7 7 C 1.38237 * 119.99938 * 179.76740 * 6 5 4 8 8 C 1.38235 * 120.00002 * 0.50986 * 7 6 5 9 9 C 1.38237 * 119.99781 * 359.74635 * 8 7 6 10 10 C 1.38232 * 120.00127 * 359.97438 * 9 8 7 11 11 C 1.54616 * 110.41115 * 237.80930 * 2 1 3 12 12 C 1.54594 * 102.91203 * 262.75956 * 11 2 1 13 13 N 1.48120 * 103.42066 * 322.87133 * 12 11 2 14 14 C 1.34784 * 127.03097 * 219.28426 * 13 12 11 15 15 O 1.21588 * 119.99858 * 179.68316 * 14 13 12 16 16 N 1.34777 * 119.99964 * 359.68732 * 14 13 12 17 17 C 1.46496 * 119.99610 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46847 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47348 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.47479 * 105.93498 * 39.02578 * 13 12 11 28 28 H 1.09004 * 109.47269 * 299.31246 * 1 2 3 29 29 H 1.08997 * 109.47511 * 59.31860 * 1 2 3 30 30 H 1.09006 * 109.47098 * 179.32097 * 1 2 3 31 31 H 1.09004 * 109.46487 * 180.68069 * 3 2 1 32 32 H 1.08995 * 109.47205 * 300.67738 * 3 2 1 33 33 H 1.09003 * 109.47217 * 300.00005 * 4 3 2 34 34 H 1.09001 * 109.46979 * 59.99619 * 4 3 2 35 35 H 1.08001 * 120.00033 * 0.02562 * 6 5 4 36 36 H 1.07995 * 120.00005 * 180.23034 * 7 6 5 37 37 H 1.08001 * 120.00281 * 179.72931 * 8 7 6 38 38 H 1.07999 * 120.00163 * 179.97438 * 9 8 7 39 39 H 1.08010 * 120.00041 * 179.97438 * 10 9 8 40 40 H 1.08991 * 110.74123 * 21.24831 * 11 2 1 41 41 H 1.08999 * 110.73606 * 144.39188 * 11 2 1 42 42 H 1.09000 * 110.61995 * 204.35867 * 12 11 2 43 43 H 1.09000 * 110.54935 * 81.34745 * 12 11 2 44 44 H 0.96996 * 119.99887 * 359.97438 * 16 14 13 45 45 H 1.09000 * 109.47627 * 59.99917 * 17 16 14 46 46 H 1.09002 * 109.46983 * 299.99313 * 17 16 14 47 47 H 1.09001 * 109.47671 * 59.99931 * 18 17 16 48 48 H 1.09006 * 109.47297 * 299.99651 * 18 17 16 49 49 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 50 50 H 1.08997 * 109.91862 * 94.13750 * 27 13 12 51 51 H 1.09011 * 109.91242 * 215.22778 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 1.5749 2.1584 1.2578 5 6 2.0979 3.5717 1.2580 6 6 3.3139 3.8585 1.8495 7 6 3.7960 5.1541 1.8455 8 6 3.0570 6.1647 1.2594 9 6 1.8385 5.8787 0.6726 10 6 1.3592 4.5822 0.6715 11 6 2.0692 -0.7720 -1.2263 12 6 2.3677 -2.1742 -0.6479 13 7 2.8825 -1.8835 0.7102 14 6 3.8947 -2.5069 1.3453 15 8 4.2169 -2.1579 2.4646 16 7 4.5500 -3.5170 0.7396 17 6 5.6498 -4.1948 1.4301 18 6 6.2168 -5.2942 0.5297 19 6 7.3487 -5.9912 1.2398 20 1 7.6353 -5.6808 2.2337 21 6 8.0183 -7.0252 0.6205 22 7 7.6697 -7.4029 -0.5900 23 14 9.4218 -7.8886 1.5005 24 1 9.9712 -8.9566 0.6270 25 1 10.4899 -6.9053 1.8125 26 1 8.9195 -8.4908 2.7615 27 6 2.0649 -0.7682 1.2229 28 1 -0.3634 0.5031 0.8961 29 1 -0.3634 0.5244 -0.8838 30 1 -0.3633 -1.0276 -0.0122 31 1 3.1503 1.4195 -0.0122 32 1 1.6947 1.9577 -0.8838 33 1 0.4850 2.1739 1.2701 34 1 1.9407 1.6357 2.1415 35 1 3.8894 3.0696 2.3110 36 1 4.7477 5.3775 2.3044 37 1 3.4316 7.1777 1.2601 38 1 1.2610 6.6683 0.2150 39 1 0.4069 4.3588 0.2133 40 1 1.3135 -0.8286 -2.0097 41 1 2.9806 -0.3084 -1.6040 42 1 3.1244 -2.6828 -1.2453 43 1 1.4553 -2.7681 -0.5943 44 1 4.2927 -3.7956 -0.1532 45 1 5.2802 -4.6378 2.3550 46 1 6.4337 -3.4733 1.6607 47 1 6.5864 -4.8518 -0.3954 48 1 5.4327 -6.0157 0.2995 49 1 6.9411 -6.9543 -1.0470 50 1 1.2330 -1.1569 1.8101 51 1 2.6786 -0.1105 1.8387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273611673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:34 Heat of formation + Delta-G solvation = -29.905094 kcal Electronic energy + Delta-G solvation = -27582.669243 eV Core-core repulsion = 23866.633784 eV Total energy + Delta-G solvation = -3716.035459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47574 -39.52211 -38.34517 -35.02907 -34.87766 -33.07978 -32.44326 -31.15608 -29.97756 -29.34916 -28.40836 -26.59220 -25.07201 -23.87123 -22.92334 -22.83795 -21.36125 -21.16342 -19.79480 -19.07470 -17.91891 -17.03427 -16.64353 -16.33256 -15.68271 -15.60167 -15.44054 -14.79705 -14.60249 -14.21671 -14.09198 -13.74284 -13.72095 -13.66150 -13.59659 -13.21518 -13.01154 -12.71663 -12.66586 -12.39816 -12.18646 -12.11421 -11.89860 -11.60482 -11.58391 -11.43164 -11.24315 -10.95578 -10.82706 -10.71045 -10.67324 -10.41964 -10.17087 -9.96628 -9.83551 -9.19563 -8.93873 -8.78850 -8.68948 -8.41087 -8.23711 -6.43030 -4.12571 1.07985 1.12653 2.83500 3.44110 3.45753 3.49453 3.52552 3.64335 4.13385 4.28685 4.30527 4.43403 4.54590 4.57104 4.66426 4.74250 4.83581 4.89892 4.97182 5.01902 5.11721 5.20023 5.25356 5.30803 5.32582 5.35216 5.38690 5.46869 5.52153 5.59992 5.67411 5.75203 5.76178 5.79069 5.83892 5.85941 5.98107 6.04896 6.14516 6.19777 6.25003 6.28278 6.34562 6.39557 6.64256 6.74022 6.89997 7.20312 7.37417 7.38913 8.09489 8.31570 8.39506 8.80814 8.94499 9.59157 10.98025 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.002030 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.309755 B =13792.317903 C =14853.728381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.096 4.096 4 C -0.088 4.088 5 C -0.078 4.078 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.119 4.119 11 C -0.124 4.124 12 C 0.100 3.900 13 N -0.644 5.644 14 C 0.720 3.280 15 O -0.595 6.595 16 N -0.739 5.739 17 C 0.148 3.852 18 C 0.000 4.000 19 C -0.601 4.601 20 H 0.053 0.947 21 C 0.016 3.984 22 N -0.910 5.910 23 Si 1.072 2.928 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.287 1.287 27 C 0.133 3.867 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.391 0.609 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.013 0.987 48 H 0.013 0.987 49 H 0.268 0.732 50 H 0.061 0.939 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 24.428 -2.233 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.134 4.134 4 C -0.125 4.125 5 C -0.078 4.078 6 C -0.135 4.135 7 C -0.136 4.136 8 C -0.146 4.146 9 C -0.139 4.139 10 C -0.137 4.137 11 C -0.162 4.162 12 C -0.023 4.023 13 N -0.383 5.383 14 C 0.422 3.578 15 O -0.473 6.473 16 N -0.393 5.393 17 C 0.025 3.975 18 C -0.037 4.037 19 C -0.639 4.639 20 H 0.072 0.928 21 C -0.187 4.187 22 N -0.546 5.546 23 Si 0.899 3.101 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.213 1.213 27 C 0.009 3.991 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.225 0.775 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.031 0.969 48 H 0.031 0.969 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.343 23.385 -1.475 28.568 hybrid contribution -1.269 1.159 -0.330 1.750 sum -17.612 24.544 -1.804 30.263 Atomic orbital electron populations 1.21922 0.93392 1.02147 1.02157 1.21508 0.95977 0.95005 0.95086 1.21613 1.01026 0.93233 0.97498 1.20791 1.01047 0.91464 0.99194 1.19937 0.94793 0.95556 0.97506 1.21159 0.95818 0.96850 0.99628 1.21185 0.99828 0.93100 0.99444 1.21145 0.95277 0.99200 0.98997 1.21134 0.96331 0.96632 0.99775 1.21043 0.99920 0.92717 1.00042 1.22756 1.01730 0.94975 0.96778 1.22381 0.99201 0.97147 0.83594 1.47863 1.35259 1.37499 1.17712 1.15504 0.78502 0.79924 0.83826 1.90892 1.69161 1.68571 1.18696 1.45548 1.37484 1.35941 1.20310 1.21434 0.85884 0.94284 0.95905 1.19452 0.96342 0.92660 0.95257 1.21883 1.18084 1.20030 1.03944 0.92836 1.25891 1.01111 0.95522 0.96219 1.70805 1.29143 1.42159 1.12510 0.83503 0.75259 0.76204 0.75104 1.20747 1.21308 1.21317 1.21976 0.94062 0.87728 0.95330 0.92025 0.92183 0.92286 0.91435 0.91398 0.90543 0.90500 0.85937 0.86111 0.86308 0.86270 0.86216 0.89977 0.90605 0.90495 0.91181 0.77542 0.92596 0.92607 0.96919 0.96896 0.92215 0.92076 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 7.86 37.16 0.29 -0.57 16 2 C -0.07 -0.60 0.70 -153.13 -0.11 -0.70 16 3 C -0.10 -0.75 4.04 -26.73 -0.11 -0.86 16 4 C -0.09 -0.67 4.78 -27.89 -0.13 -0.80 16 5 C -0.08 -0.68 5.13 -104.63 -0.54 -1.21 16 6 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 7 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 8 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 9 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 10 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 11 C -0.12 -1.00 6.16 -25.04 -0.15 -1.15 16 12 C 0.10 1.02 6.92 -2.31 -0.02 1.01 16 13 N -0.64 -9.02 3.29 -175.69 -0.58 -9.60 16 14 C 0.72 13.53 8.54 -86.91 -0.74 12.79 16 15 O -0.59 -13.48 16.68 5.29 0.09 -13.39 16 16 N -0.74 -13.87 5.53 -65.23 -0.36 -14.23 16 17 C 0.15 3.31 5.61 -4.04 -0.02 3.29 16 18 C 0.00 0.01 4.40 -27.88 -0.12 -0.11 16 19 C -0.60 -17.14 9.11 -34.44 -0.31 -17.45 16 20 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 21 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 22 N -0.91 -27.50 13.65 55.43 0.76 -26.74 16 23 Si 1.07 25.29 29.90 -169.99 -5.08 20.20 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.13 1.52 5.79 -2.98 -0.02 1.50 16 28 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.49 6.47 -51.93 -0.34 0.15 16 34 H 0.08 0.65 6.49 -51.93 -0.34 0.31 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.08 0.51 7.86 -51.93 -0.41 0.10 16 41 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 42 H 0.08 0.78 6.83 -51.93 -0.35 0.42 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.39 6.38 6.81 -40.82 -0.28 6.10 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 48 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 49 H 0.27 7.97 7.22 -40.82 -0.29 7.68 16 50 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 51 H 0.08 0.99 6.30 -51.92 -0.33 0.66 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -34.18 405.53 -11.70 -45.88 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.59 Total: 2.61 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.04 Total: -10.84 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.18 Total: -50.58 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.18 -11.70 -45.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273611673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.972 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds