Wall clock time and date at job start Tue Mar 31 2020 16:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.28662 * 2 1 4 4 C 1.52999 * 109.47152 * 60.68463 * 3 2 1 5 5 C 1.50696 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99941 * 269.72324 * 5 4 3 7 7 C 1.38237 * 119.99938 * 179.76740 * 6 5 4 8 8 C 1.38235 * 120.00002 * 0.50986 * 7 6 5 9 9 C 1.38237 * 119.99781 * 359.74635 * 8 7 6 10 10 C 1.38232 * 120.00127 * 359.97438 * 9 8 7 11 11 C 1.54616 * 110.41115 * 237.80930 * 2 1 3 12 12 C 1.54594 * 102.91203 * 262.75956 * 11 2 1 13 13 N 1.48120 * 103.42066 * 322.87133 * 12 11 2 14 14 C 1.34784 * 127.03097 * 219.28426 * 13 12 11 15 15 O 1.21588 * 119.99858 * 179.68316 * 14 13 12 16 16 N 1.34777 * 119.99964 * 359.68732 * 14 13 12 17 17 C 1.46496 * 119.99610 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46847 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47348 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.47479 * 105.93498 * 39.02578 * 13 12 11 28 28 H 1.09004 * 109.47269 * 299.31246 * 1 2 3 29 29 H 1.08997 * 109.47511 * 59.31860 * 1 2 3 30 30 H 1.09006 * 109.47098 * 179.32097 * 1 2 3 31 31 H 1.09004 * 109.46487 * 180.68069 * 3 2 1 32 32 H 1.08995 * 109.47205 * 300.67738 * 3 2 1 33 33 H 1.09003 * 109.47217 * 300.00005 * 4 3 2 34 34 H 1.09001 * 109.46979 * 59.99619 * 4 3 2 35 35 H 1.08001 * 120.00033 * 0.02562 * 6 5 4 36 36 H 1.07995 * 120.00005 * 180.23034 * 7 6 5 37 37 H 1.08001 * 120.00281 * 179.72931 * 8 7 6 38 38 H 1.07999 * 120.00163 * 179.97438 * 9 8 7 39 39 H 1.08010 * 120.00041 * 179.97438 * 10 9 8 40 40 H 1.08991 * 110.74123 * 21.24831 * 11 2 1 41 41 H 1.08999 * 110.73606 * 144.39188 * 11 2 1 42 42 H 1.09000 * 110.61995 * 204.35867 * 12 11 2 43 43 H 1.09000 * 110.54935 * 81.34745 * 12 11 2 44 44 H 0.96996 * 119.99887 * 359.97438 * 16 14 13 45 45 H 1.09000 * 109.47627 * 59.99917 * 17 16 14 46 46 H 1.09002 * 109.46983 * 299.99313 * 17 16 14 47 47 H 1.09001 * 109.47671 * 59.99931 * 18 17 16 48 48 H 1.09006 * 109.47297 * 299.99651 * 18 17 16 49 49 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 50 50 H 1.08997 * 109.91862 * 94.13750 * 27 13 12 51 51 H 1.09011 * 109.91242 * 215.22778 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 1.5749 2.1584 1.2578 5 6 2.0979 3.5717 1.2580 6 6 3.3139 3.8585 1.8495 7 6 3.7960 5.1541 1.8455 8 6 3.0570 6.1647 1.2594 9 6 1.8385 5.8787 0.6726 10 6 1.3592 4.5822 0.6715 11 6 2.0692 -0.7720 -1.2263 12 6 2.3677 -2.1742 -0.6479 13 7 2.8825 -1.8835 0.7102 14 6 3.8947 -2.5069 1.3453 15 8 4.2169 -2.1579 2.4646 16 7 4.5500 -3.5170 0.7396 17 6 5.6498 -4.1948 1.4301 18 6 6.2168 -5.2942 0.5297 19 6 7.3487 -5.9912 1.2398 20 1 7.6353 -5.6808 2.2337 21 6 8.0183 -7.0252 0.6205 22 7 7.6697 -7.4029 -0.5900 23 14 9.4218 -7.8886 1.5005 24 1 9.9712 -8.9566 0.6270 25 1 10.4899 -6.9053 1.8125 26 1 8.9195 -8.4908 2.7615 27 6 2.0649 -0.7682 1.2229 28 1 -0.3634 0.5031 0.8961 29 1 -0.3634 0.5244 -0.8838 30 1 -0.3633 -1.0276 -0.0122 31 1 3.1503 1.4195 -0.0122 32 1 1.6947 1.9577 -0.8838 33 1 0.4850 2.1739 1.2701 34 1 1.9407 1.6357 2.1415 35 1 3.8894 3.0696 2.3110 36 1 4.7477 5.3775 2.3044 37 1 3.4316 7.1777 1.2601 38 1 1.2610 6.6683 0.2150 39 1 0.4069 4.3588 0.2133 40 1 1.3135 -0.8286 -2.0097 41 1 2.9806 -0.3084 -1.6040 42 1 3.1244 -2.6828 -1.2453 43 1 1.4553 -2.7681 -0.5943 44 1 4.2927 -3.7956 -0.1532 45 1 5.2802 -4.6378 2.3550 46 1 6.4337 -3.4733 1.6607 47 1 6.5864 -4.8518 -0.3954 48 1 5.4327 -6.0157 0.2995 49 1 6.9411 -6.9543 -1.0470 50 1 1.2330 -1.1569 1.8101 51 1 2.6786 -0.1105 1.8387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273611673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:33 Heat of formation + Delta-G solvation = -48.489900 kcal Electronic energy + Delta-G solvation = -27583.475141 eV Core-core repulsion = 23866.633784 eV Total energy + Delta-G solvation = -3716.841357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.55834 -40.29903 -39.43581 -36.84486 -35.83833 -34.99798 -33.32780 -31.75965 -31.25547 -30.73906 -29.03158 -27.62788 -26.26526 -25.44492 -23.76098 -23.45213 -23.28349 -21.84702 -21.17769 -19.85408 -19.27019 -18.66414 -17.64766 -17.39815 -17.09921 -16.35248 -16.30405 -15.92902 -15.80560 -15.61987 -15.23440 -15.15623 -14.93558 -14.40194 -14.30642 -14.22616 -14.08646 -13.92677 -13.70903 -13.46183 -13.35302 -13.16035 -12.90382 -12.81233 -12.56100 -12.31074 -12.22890 -12.10860 -12.04832 -11.88179 -11.86191 -11.53870 -11.44931 -11.33959 -11.32203 -10.81797 -10.59603 -10.31984 -9.81979 -9.57954 -9.55752 -8.73511 -6.44324 0.46101 0.50182 1.50956 1.55831 1.61569 1.81672 2.03084 2.54803 2.87732 2.98591 3.11987 3.48100 3.59109 3.65800 3.94083 4.04775 4.17114 4.20471 4.23424 4.26030 4.29525 4.31308 4.38051 4.41154 4.54319 4.57321 4.63762 4.66081 4.69145 4.71483 4.75741 4.90249 4.93758 5.02292 5.04347 5.07766 5.16084 5.17339 5.20698 5.25417 5.29542 5.30345 5.35712 5.39860 5.54851 5.59897 5.63675 5.76242 5.91889 5.98828 6.11957 6.14643 6.51551 6.90497 7.35111 7.46226 8.68735 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.002030 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.309755 B =13792.317903 C =14853.728381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.089 4.089 4 C -0.083 4.083 5 C -0.088 4.088 6 C -0.141 4.141 7 C -0.132 4.132 8 C -0.136 4.136 9 C -0.125 4.125 10 C -0.123 4.123 11 C -0.117 4.117 12 C 0.092 3.908 13 N -0.641 5.641 14 C 0.715 3.285 15 O -0.641 6.641 16 N -0.733 5.733 17 C 0.168 3.832 18 C 0.010 3.990 19 C -0.623 4.623 20 H 0.050 0.950 21 C -0.032 4.032 22 N -0.931 5.931 23 Si 1.118 2.882 24 H -0.280 1.280 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.126 3.874 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.404 0.596 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.005 0.995 48 H 0.006 0.994 49 H 0.258 0.742 50 H 0.067 0.933 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.722 25.521 -3.450 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.064 4.064 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.088 4.088 6 C -0.159 4.159 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.142 4.142 10 C -0.141 4.141 11 C -0.155 4.155 12 C -0.030 4.030 13 N -0.378 5.378 14 C 0.417 3.583 15 O -0.523 6.523 16 N -0.389 5.389 17 C 0.044 3.956 18 C -0.028 4.028 19 C -0.662 4.662 20 H 0.068 0.932 21 C -0.230 4.230 22 N -0.567 5.567 23 Si 0.939 3.061 24 H -0.205 1.205 25 H -0.196 1.196 26 H -0.195 1.195 27 C 0.003 3.997 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.240 0.760 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.024 0.976 48 H 0.025 0.975 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.297 24.514 -2.741 30.712 hybrid contribution -0.747 0.900 0.032 1.170 sum -19.043 25.414 -2.709 31.873 Atomic orbital electron populations 1.21915 0.91159 1.02747 1.03412 1.21462 0.97478 0.94279 0.93135 1.21537 0.99492 0.93362 0.98252 1.20754 1.02031 0.90800 0.98395 1.20093 0.94658 0.96353 0.97717 1.21253 0.96694 0.97115 1.00849 1.21383 1.00496 0.93165 0.99948 1.21439 0.95501 0.99849 0.98621 1.21492 0.96274 0.97274 0.99207 1.21327 1.00586 0.92547 0.99651 1.22775 1.02394 0.93078 0.97257 1.22730 0.99821 0.99072 0.81400 1.47913 1.33716 1.37109 1.19106 1.15637 0.79329 0.79891 0.83472 1.90851 1.70796 1.69843 1.20855 1.45214 1.36839 1.36081 1.20720 1.20920 0.86496 0.93228 0.94998 1.19282 0.95453 0.92983 0.95048 1.22292 1.19130 1.20584 1.04148 0.93196 1.27391 1.03224 0.96223 0.96199 1.70923 1.29539 1.42815 1.13456 0.82915 0.72872 0.75664 0.74653 1.20526 1.19568 1.19545 1.22244 0.93390 0.86983 0.97074 0.91545 0.90168 0.92067 0.93936 0.89696 0.88597 0.92183 0.87185 0.85446 0.84467 0.83919 0.84007 0.86818 0.91381 0.90475 0.89150 0.76016 0.93889 0.94003 0.97634 0.97544 0.93219 0.91512 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 7.86 71.98 0.57 -0.63 16 2 C -0.06 -0.88 0.70 -51.29 -0.04 -0.91 16 3 C -0.09 -1.28 4.04 30.60 0.12 -1.15 16 4 C -0.08 -1.20 4.78 29.85 0.14 -1.06 16 5 C -0.09 -1.49 5.13 -19.87 -0.10 -1.59 16 6 C -0.14 -2.78 9.70 22.27 0.22 -2.57 16 7 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 8 C -0.14 -2.00 10.05 22.27 0.22 -1.78 16 9 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 10 C -0.12 -1.70 9.70 22.27 0.22 -1.48 16 11 C -0.12 -1.58 6.16 31.69 0.20 -1.39 16 12 C 0.09 1.71 6.92 86.61 0.60 2.31 16 13 N -0.64 -17.86 3.29 -828.02 -2.73 -20.59 16 14 C 0.71 27.53 8.54 179.05 1.53 29.06 16 15 O -0.64 -30.30 16.68 -3.99 -0.07 -30.37 16 16 N -0.73 -28.06 5.53 -478.54 -2.64 -30.71 16 17 C 0.17 7.76 5.61 86.38 0.48 8.25 16 18 C 0.01 0.51 4.40 29.85 0.13 0.64 16 19 C -0.62 -36.01 9.11 25.60 0.23 -35.77 16 20 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 21 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 22 N -0.93 -56.57 13.65 21.45 0.29 -56.28 16 23 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 C 0.13 2.85 5.79 86.53 0.50 3.35 16 28 H 0.07 0.55 6.57 -2.38 -0.02 0.54 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.04 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.00 6.47 -2.39 -0.02 0.99 16 34 H 0.06 1.07 6.49 -2.39 -0.02 1.05 16 35 H 0.11 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.11 0.90 7.86 -2.39 -0.02 0.89 16 41 H 0.07 1.06 7.86 -2.39 -0.02 1.04 16 42 H 0.08 1.44 6.83 -2.39 -0.02 1.43 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.40 13.21 6.81 -92.71 -0.63 12.58 16 45 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.01 0.29 8.01 -2.39 -0.02 0.27 16 48 H 0.01 0.33 8.01 -2.38 -0.02 0.31 16 49 H 0.26 15.66 7.22 -92.71 -0.67 14.99 16 50 H 0.07 1.44 7.68 -2.39 -0.02 1.42 16 51 H 0.06 1.51 6.30 -2.38 -0.01 1.50 16 Total: -1.00 -75.58 405.53 3.21 -72.37 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.37 Total: 22.77 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 5.93 Total: -9.65 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -5.08 Total: -107.57 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.07 Total: -30.37 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -75.58 3.21 -72.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273611673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.883 kcal (2) G-P(sol) polarization free energy of solvation -75.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds