Wall clock time and date at job start Tue Mar 31 2020 16:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.57839 * 2 1 4 4 O 1.21283 * 119.99558 * 120.15916 * 3 2 1 5 5 N 1.34773 * 119.99937 * 300.16289 * 3 2 1 6 6 C 1.46503 * 119.99996 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47106 * 179.97438 * 6 5 3 8 8 C 1.50704 * 109.46792 * 179.97438 * 7 6 5 9 9 H 1.07993 * 120.00414 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99651 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00093 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99936 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46972 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47155 * 120.00255 * 12 10 8 15 15 H 1.48498 * 109.47256 * 240.00606 * 12 10 8 16 16 C 1.53124 * 109.52261 * 120.16263 * 2 1 3 17 17 C 1.53039 * 109.27649 * 177.55369 * 16 2 1 18 18 N 1.46845 * 109.52815 * 300.82186 * 17 16 2 19 19 C 1.46893 * 111.00178 * 185.84159 * 18 17 16 20 20 C 1.50702 * 109.47296 * 170.00149 * 19 18 17 21 21 C 1.38234 * 120.00271 * 89.99424 * 20 19 18 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 19 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 269.97552 * 20 19 18 26 26 C 1.46845 * 111.19943 * 61.74068 * 18 17 16 27 27 C 1.53043 * 109.52283 * 298.26086 * 26 18 17 28 28 H 1.09008 * 109.46511 * 299.84007 * 1 2 3 29 29 H 1.08999 * 109.46806 * 59.83459 * 1 2 3 30 30 H 1.08996 * 109.47469 * 179.84099 * 1 2 3 31 31 H 0.96998 * 120.00260 * 359.97438 * 5 3 2 32 32 H 1.09006 * 109.46926 * 300.00251 * 6 5 3 33 33 H 1.09005 * 109.46690 * 59.99661 * 6 5 3 34 34 H 1.08997 * 109.47086 * 299.99614 * 7 6 5 35 35 H 1.09005 * 109.47514 * 60.00300 * 7 6 5 36 36 H 0.97003 * 119.99791 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.50160 * 57.61660 * 16 2 1 38 38 H 1.08994 * 109.53145 * 297.51442 * 16 2 1 39 39 H 1.09001 * 109.45996 * 180.80224 * 17 16 2 40 40 H 1.09007 * 109.46024 * 60.83802 * 17 16 2 41 41 H 1.09003 * 109.47269 * 49.99586 * 19 18 17 42 42 H 1.09009 * 109.47177 * 289.99713 * 19 18 17 43 43 H 1.08001 * 119.99769 * 359.97438 * 21 20 19 44 44 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 46 46 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00489 * 0.02562 * 25 20 19 48 48 H 1.08999 * 109.46409 * 58.27243 * 26 18 17 49 49 H 1.08998 * 109.46591 * 178.24887 * 26 18 17 50 50 H 1.08996 * 109.50518 * 299.23709 * 27 26 18 51 51 H 1.09005 * 109.53524 * 179.13420 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0350 1.4199 0.0000 4 8 2.7354 1.8143 0.9082 5 7 1.7083 2.2513 -1.0091 6 6 2.1987 3.6318 -1.0089 7 6 1.6874 4.3549 -2.2564 8 6 2.1914 5.7752 -2.2557 9 1 2.8145 6.1267 -1.4467 10 6 1.8579 6.6255 -3.2886 11 7 1.0996 6.1973 -4.2741 12 14 2.4832 8.3857 -3.2882 13 1 3.3100 8.6170 -2.0765 14 1 3.3065 8.6188 -4.5019 15 1 1.3297 9.3208 -3.2855 16 6 2.0417 -0.7251 1.2478 17 6 3.5708 -0.7754 1.2115 18 7 4.0102 -1.4790 -0.0001 19 6 5.4670 -1.6680 -0.0002 20 6 5.8529 -2.5980 -1.1215 21 6 6.1513 -2.0876 -2.3710 22 6 6.5058 -2.9406 -3.3993 23 6 6.5624 -4.3040 -3.1781 24 6 6.2650 -4.8143 -1.9282 25 6 5.9088 -3.9614 -0.9003 26 6 3.5708 -0.7753 -1.2117 27 6 2.0417 -0.7251 -1.2479 28 1 -0.3633 0.5114 0.8915 29 1 -0.3633 0.5164 -0.8885 30 1 -0.3634 -1.0276 -0.0029 31 1 1.1484 1.9357 -1.7356 32 1 1.8383 4.1452 -0.1174 33 1 3.2888 3.6301 -1.0114 34 1 2.0482 3.8414 -3.1475 35 1 0.5973 4.3567 -2.2543 36 1 0.8646 6.7956 -5.0005 37 1 1.6446 -1.7401 1.2674 38 1 1.7162 -0.1897 2.1396 39 1 3.9378 -1.3036 2.0915 40 1 3.9675 0.2399 1.2059 41 1 5.7776 -2.0983 0.9520 42 1 5.9583 -0.7052 -0.1413 43 1 6.1075 -1.0224 -2.5438 44 1 6.7394 -2.5420 -4.3755 45 1 6.8351 -4.9709 -3.9826 46 1 6.3088 -5.8794 -1.7554 47 1 5.6756 -4.3601 0.0759 48 1 3.9674 0.2400 -1.2060 49 1 3.9377 -1.3035 -2.0918 50 1 1.6446 -1.7399 -1.2675 51 1 1.7155 -0.1893 -2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275167736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:58 Heat of formation + Delta-G solvation = -28.834578 kcal Electronic energy + Delta-G solvation = -28679.243790 eV Core-core repulsion = 24963.254752 eV Total energy + Delta-G solvation = -3715.989038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68792 -39.44837 -37.61425 -34.96141 -34.87770 -32.88662 -31.74813 -31.16131 -30.70745 -29.53786 -28.26562 -25.33340 -24.97036 -23.41426 -22.85885 -22.55300 -21.47682 -20.95899 -20.66236 -18.94210 -16.93269 -16.54648 -16.44188 -15.77639 -15.55106 -15.38667 -15.12116 -15.03615 -14.58394 -14.49296 -14.18803 -13.94192 -13.62750 -13.49280 -13.42583 -12.93481 -12.81484 -12.44207 -12.39541 -12.29610 -12.15826 -12.10097 -11.83637 -11.55570 -11.22199 -11.21832 -11.14330 -11.08250 -11.01202 -10.65285 -10.42185 -10.36324 -10.26391 -9.75332 -9.41196 -9.10635 -9.04689 -8.92434 -8.55591 -8.37783 -8.21616 -6.11773 -4.14539 1.17685 1.25924 3.01699 3.26279 3.33923 3.38671 3.52027 3.69503 4.07470 4.39708 4.54235 4.65065 4.69448 4.73076 4.78130 4.85707 4.96317 5.12472 5.18796 5.24853 5.25388 5.34240 5.38793 5.44539 5.49936 5.52809 5.58286 5.62570 5.69831 5.79616 5.85141 5.88392 5.90459 5.98000 6.06664 6.10337 6.11772 6.25853 6.30964 6.32491 6.35848 6.38050 6.48372 6.71641 6.83988 6.93825 7.01139 7.07656 7.49574 7.59153 7.86577 8.02730 8.25848 8.67286 8.91724 9.50459 10.99818 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002751 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.448096 B =10176.994318 C =11535.675719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C 0.516 3.484 4 O -0.549 6.549 5 N -0.720 5.720 6 C 0.122 3.878 7 C 0.013 3.987 8 C -0.521 4.521 9 H 0.059 0.941 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.085 4.085 17 C 0.043 3.957 18 N -0.531 5.531 19 C 0.092 3.908 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.100 4.100 26 C 0.049 3.951 27 C -0.101 4.101 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.396 0.604 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.036 0.964 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -23.079 5.505 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C 0.301 3.699 4 O -0.428 6.428 5 N -0.370 5.370 6 C 0.000 4.000 7 C -0.024 4.024 8 C -0.559 4.559 9 H 0.077 0.923 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.123 4.123 17 C -0.084 4.084 18 N -0.255 5.255 19 C -0.036 4.036 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.079 4.079 27 C -0.139 4.139 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.054 0.946 49 H 0.099 0.901 50 H 0.099 0.901 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.511 -23.144 6.005 24.538 hybrid contribution 0.346 1.692 -0.603 1.829 sum 5.856 -21.453 5.402 22.884 Atomic orbital electron populations 1.21826 0.92529 1.02610 1.02720 1.20926 0.97003 0.92796 0.98000 1.20445 0.80306 0.87071 0.82050 1.90600 1.38474 1.77422 1.36323 1.46354 1.52485 1.13609 1.24509 1.21691 0.98293 0.78781 1.01216 1.19316 0.96911 0.95140 0.91070 1.21083 1.31761 0.95691 1.07408 0.92276 1.24996 0.95011 0.98899 0.95379 1.69963 1.36620 1.35990 1.10686 0.86471 0.78701 0.84410 0.78081 1.19605 1.20913 1.20905 1.21376 0.94961 0.99748 0.96226 1.22327 0.95896 0.98689 0.91533 1.62008 1.10835 1.50089 1.02596 1.21017 0.88481 0.97097 0.96960 1.19773 0.98609 0.94268 0.94683 1.21139 0.99386 0.99911 0.92792 1.21138 1.00049 0.93631 0.99033 1.21136 1.00545 0.95389 0.97125 1.21134 1.00070 0.99582 0.93363 1.20999 0.98918 0.92679 0.99235 1.22183 0.95492 0.96849 0.93407 1.21644 0.95100 1.01142 0.96056 0.92061 0.91892 0.91510 0.77025 0.92684 0.92848 0.96017 0.95979 0.92889 0.90929 0.90925 0.91260 0.91593 0.89982 0.93880 0.86224 0.86125 0.86345 0.86277 0.86099 0.94608 0.90143 0.90132 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.39 37.16 0.31 -1.16 16 2 C -0.08 -1.04 0.63 -155.53 -0.10 -1.14 16 3 C 0.52 8.51 5.09 -10.99 -0.06 8.46 16 4 O -0.55 -10.86 13.80 5.56 0.08 -10.79 16 5 N -0.72 -12.45 5.33 -60.29 -0.32 -12.77 16 6 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 7 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 8 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 9 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 12 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.08 -1.01 4.52 -26.65 -0.12 -1.13 16 17 C 0.04 0.54 5.18 -3.83 -0.02 0.52 16 18 N -0.53 -6.27 4.65 -236.11 -1.10 -7.37 16 19 C 0.09 1.00 5.12 -4.98 -0.03 0.97 16 20 C -0.07 -0.77 4.89 -104.62 -0.51 -1.28 16 21 C -0.11 -1.20 7.88 -39.59 -0.31 -1.51 16 22 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 26 C 0.05 0.61 4.95 -3.83 -0.02 0.59 16 27 C -0.10 -1.16 4.81 -26.64 -0.13 -1.29 16 28 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.40 6.08 7.30 -40.82 -0.30 5.78 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 39 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 40 H 0.07 1.03 5.72 -51.92 -0.30 0.74 16 41 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 42 H 0.04 0.51 8.07 -51.92 -0.42 0.09 16 43 H 0.12 1.25 7.95 -52.49 -0.42 0.84 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.04 0.54 7.31 -51.93 -0.38 0.16 16 49 H 0.08 0.97 5.75 -51.93 -0.30 0.67 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -31.09 399.08 -11.50 -42.58 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.75 Total: 4.52 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -3.13 Total: -13.25 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.68 Total: -45.41 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.09 -11.50 -42.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275167736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.748 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds