Wall clock time and date at job start Tue Mar 31 2020 16:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.57839 * 2 1 4 4 O 1.21283 * 119.99558 * 120.15916 * 3 2 1 5 5 N 1.34773 * 119.99937 * 300.16289 * 3 2 1 6 6 C 1.46503 * 119.99996 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47106 * 179.97438 * 6 5 3 8 8 C 1.50704 * 109.46792 * 179.97438 * 7 6 5 9 9 H 1.07993 * 120.00414 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99651 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00093 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99936 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46972 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47155 * 120.00255 * 12 10 8 15 15 H 1.48498 * 109.47256 * 240.00606 * 12 10 8 16 16 C 1.53124 * 109.52261 * 120.16263 * 2 1 3 17 17 C 1.53039 * 109.27649 * 177.55369 * 16 2 1 18 18 N 1.46845 * 109.52815 * 300.82186 * 17 16 2 19 19 C 1.46893 * 111.00178 * 185.84159 * 18 17 16 20 20 C 1.50702 * 109.47296 * 170.00149 * 19 18 17 21 21 C 1.38234 * 120.00271 * 89.99424 * 20 19 18 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 19 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 269.97552 * 20 19 18 26 26 C 1.46845 * 111.19943 * 61.74068 * 18 17 16 27 27 C 1.53043 * 109.52283 * 298.26086 * 26 18 17 28 28 H 1.09008 * 109.46511 * 299.84007 * 1 2 3 29 29 H 1.08999 * 109.46806 * 59.83459 * 1 2 3 30 30 H 1.08996 * 109.47469 * 179.84099 * 1 2 3 31 31 H 0.96998 * 120.00260 * 359.97438 * 5 3 2 32 32 H 1.09006 * 109.46926 * 300.00251 * 6 5 3 33 33 H 1.09005 * 109.46690 * 59.99661 * 6 5 3 34 34 H 1.08997 * 109.47086 * 299.99614 * 7 6 5 35 35 H 1.09005 * 109.47514 * 60.00300 * 7 6 5 36 36 H 0.97003 * 119.99791 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.50160 * 57.61660 * 16 2 1 38 38 H 1.08994 * 109.53145 * 297.51442 * 16 2 1 39 39 H 1.09001 * 109.45996 * 180.80224 * 17 16 2 40 40 H 1.09007 * 109.46024 * 60.83802 * 17 16 2 41 41 H 1.09003 * 109.47269 * 49.99586 * 19 18 17 42 42 H 1.09009 * 109.47177 * 289.99713 * 19 18 17 43 43 H 1.08001 * 119.99769 * 359.97438 * 21 20 19 44 44 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 46 46 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00489 * 0.02562 * 25 20 19 48 48 H 1.08999 * 109.46409 * 58.27243 * 26 18 17 49 49 H 1.08998 * 109.46591 * 178.24887 * 26 18 17 50 50 H 1.08996 * 109.50518 * 299.23709 * 27 26 18 51 51 H 1.09005 * 109.53524 * 179.13420 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0350 1.4199 0.0000 4 8 2.7354 1.8143 0.9082 5 7 1.7083 2.2513 -1.0091 6 6 2.1987 3.6318 -1.0089 7 6 1.6874 4.3549 -2.2564 8 6 2.1914 5.7752 -2.2557 9 1 2.8145 6.1267 -1.4467 10 6 1.8579 6.6255 -3.2886 11 7 1.0996 6.1973 -4.2741 12 14 2.4832 8.3857 -3.2882 13 1 3.3100 8.6170 -2.0765 14 1 3.3065 8.6188 -4.5019 15 1 1.3297 9.3208 -3.2855 16 6 2.0417 -0.7251 1.2478 17 6 3.5708 -0.7754 1.2115 18 7 4.0102 -1.4790 -0.0001 19 6 5.4670 -1.6680 -0.0002 20 6 5.8529 -2.5980 -1.1215 21 6 6.1513 -2.0876 -2.3710 22 6 6.5058 -2.9406 -3.3993 23 6 6.5624 -4.3040 -3.1781 24 6 6.2650 -4.8143 -1.9282 25 6 5.9088 -3.9614 -0.9003 26 6 3.5708 -0.7753 -1.2117 27 6 2.0417 -0.7251 -1.2479 28 1 -0.3633 0.5114 0.8915 29 1 -0.3633 0.5164 -0.8885 30 1 -0.3634 -1.0276 -0.0029 31 1 1.1484 1.9357 -1.7356 32 1 1.8383 4.1452 -0.1174 33 1 3.2888 3.6301 -1.0114 34 1 2.0482 3.8414 -3.1475 35 1 0.5973 4.3567 -2.2543 36 1 0.8646 6.7956 -5.0005 37 1 1.6446 -1.7401 1.2674 38 1 1.7162 -0.1897 2.1396 39 1 3.9378 -1.3036 2.0915 40 1 3.9675 0.2399 1.2059 41 1 5.7776 -2.0983 0.9520 42 1 5.9583 -0.7052 -0.1413 43 1 6.1075 -1.0224 -2.5438 44 1 6.7394 -2.5420 -4.3755 45 1 6.8351 -4.9709 -3.9826 46 1 6.3088 -5.8794 -1.7554 47 1 5.6756 -4.3601 0.0759 48 1 3.9674 0.2400 -1.2060 49 1 3.9377 -1.3035 -2.0918 50 1 1.6446 -1.7399 -1.2675 51 1 1.7155 -0.1893 -2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275167736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:58 Heat of formation + Delta-G solvation = -46.918670 kcal Electronic energy + Delta-G solvation = -28680.027975 eV Core-core repulsion = 24963.254752 eV Total energy + Delta-G solvation = -3716.773223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85300 -40.28675 -38.74498 -36.62692 -35.94223 -34.82779 -32.67073 -31.99960 -31.63659 -31.27342 -29.16591 -26.97897 -26.08027 -24.35392 -24.19592 -23.34630 -22.85951 -22.20771 -21.69483 -20.28116 -18.54918 -17.67924 -17.60711 -17.03659 -16.61833 -16.47164 -16.42432 -16.34801 -16.08447 -15.48809 -15.31428 -15.07970 -14.84452 -14.71487 -14.31855 -14.24954 -13.89821 -13.70897 -13.45768 -13.31084 -13.23615 -13.12650 -13.02828 -12.97364 -12.74192 -12.55536 -12.47999 -12.30323 -12.09138 -11.95065 -11.80175 -11.69881 -11.46093 -11.35989 -11.24282 -10.63828 -10.56868 -10.01703 -9.77462 -9.68317 -9.26237 -8.27232 -6.37794 0.44145 0.53826 1.38056 1.39098 1.52042 1.67499 2.24866 2.43508 2.73909 3.07330 3.18221 3.58077 3.66043 3.75423 3.82778 3.95297 4.10114 4.18771 4.23961 4.28407 4.35494 4.38919 4.44004 4.45839 4.53611 4.60322 4.64568 4.68439 4.70991 4.76692 4.80054 4.80959 4.87422 4.94741 5.03588 5.10578 5.13104 5.16497 5.20107 5.22709 5.26435 5.37302 5.48713 5.54059 5.60007 5.65854 5.72833 5.75692 6.02897 6.07392 6.13121 6.16372 6.62997 6.75221 7.29558 7.31630 8.84746 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002751 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.448096 B =10176.994318 C =11535.675719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C 0.513 3.487 4 O -0.584 6.584 5 N -0.717 5.717 6 C 0.144 3.856 7 C 0.025 3.975 8 C -0.547 4.547 9 H 0.056 0.944 10 C 0.008 3.992 11 N -0.925 5.925 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.275 1.275 16 C -0.083 4.083 17 C 0.044 3.956 18 N -0.520 5.520 19 C 0.093 3.907 20 C -0.085 4.085 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.105 4.105 26 C 0.052 3.948 27 C -0.098 4.098 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.407 0.593 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.007 0.993 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.028 0.972 41 H 0.096 0.904 42 H 0.023 0.977 43 H 0.108 0.892 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.135 0.865 48 H 0.001 0.999 49 H 0.085 0.915 50 H 0.104 0.896 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.917 -25.243 5.464 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 C 0.301 3.699 4 O -0.464 6.464 5 N -0.368 5.368 6 C 0.020 3.980 7 C -0.012 4.012 8 C -0.585 4.585 9 H 0.074 0.926 10 C -0.191 4.191 11 N -0.564 5.564 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.200 1.200 16 C -0.121 4.121 17 C -0.084 4.084 18 N -0.244 5.244 19 C -0.035 4.035 20 C -0.085 4.085 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.124 4.124 26 C -0.076 4.076 27 C -0.136 4.136 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.243 0.757 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.025 0.975 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.114 0.886 42 H 0.041 0.959 43 H 0.126 0.874 44 H 0.149 0.851 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.152 0.848 48 H 0.019 0.981 49 H 0.103 0.897 50 H 0.123 0.877 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.107 -25.333 5.961 26.521 hybrid contribution 0.525 2.317 -0.594 2.448 sum 5.632 -23.017 5.367 24.296 Atomic orbital electron populations 1.21854 0.90489 1.04523 1.02573 1.20952 0.98452 0.89430 0.99001 1.21298 0.79236 0.88553 0.80783 1.90593 1.39851 1.78427 1.37577 1.46189 1.52838 1.12219 1.25522 1.21151 0.97158 0.80745 0.98980 1.19107 0.95827 0.94440 0.91852 1.21469 1.32115 0.97298 1.07641 0.92612 1.25856 0.95056 1.03261 0.94884 1.70058 1.37458 1.37644 1.11273 0.85413 0.78352 0.79082 0.78307 1.19156 1.20114 1.20044 1.21407 0.94257 1.00909 0.95479 1.22289 0.96626 0.96908 0.92545 1.62098 1.11359 1.48985 1.01986 1.21042 0.87850 0.96501 0.98077 1.19763 0.99596 0.94823 0.94342 1.21171 1.00605 0.99657 0.93551 1.21351 0.99989 0.94205 0.99251 1.21460 0.99703 0.95249 0.97984 1.21466 0.98968 1.00802 0.92952 1.21201 0.98744 0.92167 1.00244 1.22147 0.96440 0.95001 0.94054 1.21680 0.94007 1.02302 0.95564 0.92620 0.91732 0.88544 0.75735 0.93831 0.94325 0.97457 0.97258 0.92473 0.88225 0.91662 0.89619 0.95335 0.88617 0.95868 0.87430 0.85055 0.84076 0.83801 0.84760 0.98094 0.89702 0.87733 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.39 71.98 0.60 -1.97 16 2 C -0.08 -1.78 0.63 -52.84 -0.03 -1.81 16 3 C 0.51 17.29 5.09 87.66 0.45 17.73 16 4 O -0.58 -24.04 13.80 -3.04 -0.04 -24.08 16 5 N -0.72 -25.48 5.33 -463.05 -2.47 -27.95 16 6 C 0.14 6.35 5.61 86.38 0.48 6.83 16 7 C 0.03 1.29 5.09 29.85 0.15 1.44 16 8 C -0.55 -30.95 9.11 25.60 0.23 -30.72 16 9 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 10 C 0.01 0.47 5.46 84.66 0.46 0.93 16 11 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 12 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 C -0.08 -1.84 4.52 30.65 0.14 -1.70 16 17 C 0.04 1.09 5.18 86.33 0.45 1.53 16 18 N -0.52 -12.04 4.65 -900.92 -4.19 -16.22 16 19 C 0.09 2.04 5.12 85.56 0.44 2.48 16 20 C -0.08 -1.76 4.89 -19.87 -0.10 -1.85 16 21 C -0.13 -2.81 7.88 22.27 0.18 -2.64 16 22 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 23 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 24 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 25 C -0.11 -1.82 9.70 22.27 0.22 -1.60 16 26 C 0.05 1.30 4.95 86.33 0.43 1.72 16 27 C -0.10 -2.08 4.81 30.65 0.15 -1.93 16 28 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.06 1.20 7.56 -2.39 -0.02 1.18 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.41 12.63 7.30 -92.71 -0.68 11.95 16 32 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.47 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 39 H 0.09 1.82 8.02 -2.39 -0.02 1.80 16 40 H 0.03 0.94 5.72 -2.38 -0.01 0.92 16 41 H 0.10 1.80 7.93 -2.39 -0.02 1.78 16 42 H 0.02 0.59 8.07 -2.38 -0.02 0.57 16 43 H 0.11 2.46 7.95 -2.91 -0.02 2.43 16 44 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 46 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 48 H 0.00 0.02 7.31 -2.39 -0.02 0.01 16 49 H 0.08 2.05 5.75 -2.39 -0.01 2.04 16 50 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.08 1.57 7.53 -2.38 -0.02 1.56 16 Total: -1.00 -68.29 399.08 0.75 -67.54 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.22 Total: 25.83 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.91 Total: -17.05 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -6.37 Total: -98.21 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.04 Total: -24.08 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.29 0.75 -67.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275167736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.624 kcal (2) G-P(sol) polarization free energy of solvation -68.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds