Wall clock time and date at job start Tue Mar 31 2020 16:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47327 * 2 1 4 4 C 1.38252 * 120.00336 * 264.97989 * 3 2 1 5 5 C 1.38215 * 120.00005 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99991 * 0.02599 * 5 4 3 7 7 C 1.38218 * 120.00186 * 359.76548 * 6 5 4 8 8 C 1.38220 * 119.99552 * 84.99657 * 3 2 1 9 9 C 1.50699 * 119.99840 * 359.97438 * 8 3 2 10 10 C 1.50694 * 109.47447 * 84.99467 * 9 8 3 11 11 O 1.21283 * 120.00284 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00167 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00217 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47174 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.52392 * 304.91872 * 14 13 12 16 16 C 1.53349 * 109.68380 * 184.75409 * 14 13 12 17 17 C 1.53044 * 109.60552 * 178.74598 * 16 14 13 18 18 C 1.53192 * 109.31170 * 61.37285 * 17 16 14 19 19 N 1.46924 * 108.77717 * 305.36157 * 18 17 16 20 20 C 1.36936 * 120.63127 * 233.63784 * 19 18 17 21 21 H 1.07999 * 120.00022 * 151.80945 * 20 19 18 22 22 C 1.38813 * 120.00005 * 331.80020 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.09585 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.09475 * 22 20 19 25 25 H 1.48494 * 109.47083 * 60.00061 * 24 22 20 26 26 H 1.48500 * 109.46851 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47024 * 300.00112 * 24 22 20 28 28 C 1.46928 * 118.73859 * 53.61146 * 19 18 17 29 29 H 1.09003 * 109.47013 * 59.99900 * 1 2 3 30 30 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47149 * 299.99482 * 1 2 3 32 32 H 1.09003 * 109.46966 * 240.00408 * 2 1 3 33 33 H 1.08994 * 109.47452 * 120.00481 * 2 1 3 34 34 H 1.07998 * 120.00053 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.00170 * 179.97438 * 5 4 3 36 36 H 1.08000 * 120.00109 * 179.97438 * 6 5 4 37 37 H 1.07995 * 120.00417 * 180.25405 * 7 6 5 38 38 H 1.08997 * 109.47208 * 324.99080 * 9 8 3 39 39 H 1.09005 * 109.46569 * 204.99602 * 9 8 3 40 40 H 0.97001 * 119.99399 * 0.02562 * 12 10 9 41 41 H 1.08992 * 109.46852 * 60.00174 * 13 12 10 42 42 H 1.09002 * 109.46713 * 300.00150 * 13 12 10 43 43 H 1.08991 * 109.41943 * 58.70711 * 16 14 13 44 44 H 1.09003 * 109.42058 * 298.77951 * 16 14 13 45 45 H 1.08992 * 109.49619 * 301.41603 * 17 16 14 46 46 H 1.09005 * 109.49321 * 181.31918 * 17 16 14 47 47 H 1.09000 * 109.58292 * 185.57548 * 18 17 16 48 48 H 1.08996 * 109.70913 * 65.22193 * 18 17 16 49 49 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.58355 * 66.17510 * 28 19 18 51 51 H 1.08994 * 109.59076 * 186.46369 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3617 2.0377 -1.1927 5 6 2.8219 3.3409 -1.1926 6 6 2.9536 4.0275 0.0001 7 6 2.6203 3.4123 1.1922 8 6 2.1643 2.1071 1.1925 9 6 1.8053 1.4347 2.4925 10 6 2.9839 0.6370 2.9879 11 8 4.0140 0.6161 2.3481 12 7 2.8933 -0.0532 4.1420 13 6 4.0394 -0.8282 4.6239 14 6 3.6747 -1.5109 5.9436 15 1 3.3270 -0.7634 6.6566 16 6 4.9060 -2.2262 6.5127 17 6 4.5474 -2.8822 7.8481 18 6 3.4464 -3.9230 7.6218 19 7 2.3149 -3.2750 6.9447 20 6 1.0511 -3.3555 7.4658 21 1 0.3376 -2.5672 7.2763 22 6 0.6869 -4.4505 8.2373 23 7 1.4089 -5.5504 8.2012 24 14 -0.8280 -4.3630 9.3269 25 1 -2.0256 -4.1000 8.4893 26 1 -0.9977 -5.6527 10.0432 27 1 -0.6644 -3.2664 10.3149 28 6 2.5652 -2.5384 5.6983 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.2592 1.5012 -2.1244 35 1 3.0795 3.8227 -2.1243 36 1 3.3136 5.0457 0.0002 37 1 2.7193 3.9500 2.1235 38 1 0.9565 0.7692 2.3350 39 1 1.5417 2.1910 3.2320 40 1 2.0693 -0.0367 4.6535 41 1 4.8879 -0.1625 4.7811 42 1 4.3031 -1.5846 3.8846 43 1 5.7064 -1.5027 6.6668 44 1 5.2379 -2.9908 5.8102 45 1 4.1917 -2.1216 8.5431 46 1 5.4297 -3.3701 8.2623 47 1 3.1181 -4.3221 8.5815 48 1 3.8285 -4.7331 7.0007 49 1 1.1546 -6.3154 8.7406 50 1 2.8771 -3.2340 4.9193 51 1 1.6548 -2.0260 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275931906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:07 Heat of formation + Delta-G solvation = -16.903881 kcal Electronic energy + Delta-G solvation = -28303.311302 eV Core-core repulsion = 24587.839618 eV Total energy + Delta-G solvation = -3715.471684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.34138 -39.01683 -37.72110 -34.80415 -34.43085 -33.05026 -32.65005 -30.50683 -30.41040 -29.62552 -27.86479 -25.37894 -25.08618 -23.95121 -22.34357 -22.04640 -21.10851 -20.74056 -20.11861 -19.04950 -17.13048 -16.62806 -16.57776 -16.25867 -15.72366 -15.16159 -14.98786 -14.83117 -14.20683 -14.03200 -13.83808 -13.71066 -13.52015 -13.44326 -13.20686 -13.04139 -12.80318 -12.51531 -12.32989 -12.19846 -12.18429 -11.91491 -11.87509 -11.43016 -11.30301 -11.03268 -10.93395 -10.81440 -10.72381 -10.52725 -10.26643 -10.20094 -9.98151 -9.85909 -9.57500 -9.44359 -8.90858 -8.89028 -8.68060 -8.49030 -6.69962 -5.81868 -3.25146 1.22612 1.30347 2.71856 3.27014 3.35017 3.41517 3.41929 3.73930 4.45253 4.48695 4.61004 4.76835 4.83062 4.94215 5.00543 5.08617 5.12410 5.22639 5.27167 5.28999 5.36791 5.42381 5.45253 5.45746 5.50068 5.60520 5.74563 5.81475 5.81984 5.88955 5.94920 5.98292 6.00848 6.11320 6.22345 6.31643 6.36153 6.36411 6.39144 6.52470 6.55657 6.57297 6.68728 6.75606 6.84155 6.90322 6.94599 7.37657 7.61164 7.65148 7.75210 8.31925 8.41727 9.17831 9.81360 10.38452 11.26402 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.002538 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.827479 B =11029.847372 C =11968.383434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.060 4.060 9 C -0.110 4.110 10 C 0.513 3.487 11 O -0.537 6.537 12 N -0.725 5.725 13 C 0.128 3.872 14 C -0.118 4.118 15 H 0.072 0.928 16 C -0.099 4.099 17 C -0.141 4.141 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.155 3.845 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.403 0.597 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.018 0.982 49 H 0.255 0.745 50 H 0.018 0.982 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 15.740 -14.087 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.060 4.060 9 C -0.149 4.149 10 C 0.298 3.702 11 O -0.414 6.414 12 N -0.377 5.377 13 C 0.005 3.995 14 C -0.138 4.138 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.028 3.972 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.238 0.762 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.036 0.964 49 H 0.065 0.935 50 H 0.036 0.964 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.264 15.524 -14.446 21.326 hybrid contribution -1.061 -0.005 0.879 1.377 sum 1.203 15.519 -13.567 20.649 Atomic orbital electron populations 1.21776 0.94576 1.02065 1.02069 1.20583 0.96058 0.92755 1.03297 1.19696 0.98127 0.95788 0.92603 1.20975 1.00194 0.95188 0.97347 1.21086 0.99915 0.94838 0.97963 1.21045 1.00884 0.99916 0.92580 1.20970 0.98773 0.94473 0.98148 1.19121 0.99811 0.93930 0.93143 1.20774 0.97933 1.00265 0.95965 1.20433 0.89325 0.79650 0.80761 1.90715 1.31099 1.63133 1.56407 1.46102 1.17611 1.49985 1.24031 1.21423 0.87839 0.94216 0.96071 1.22003 0.98550 0.98692 0.94603 0.90913 1.21390 0.95679 0.98716 0.97973 1.22167 0.99688 1.00347 0.95868 1.20793 0.85251 0.90883 0.98762 1.44020 1.04462 1.60877 1.21991 1.19106 0.89540 1.01705 1.28126 0.91816 1.25049 0.98086 0.94598 1.01816 1.70025 1.40643 1.02267 1.41612 0.86381 0.82819 0.76802 0.80818 1.20876 1.21625 1.21037 1.20881 0.94613 0.92283 0.89422 0.92572 0.92060 0.92447 0.90998 0.90843 0.86257 0.86333 0.86282 0.86283 0.87629 0.88081 0.76247 0.92113 0.91696 0.93490 0.92507 0.92764 0.93183 0.89607 0.96431 0.93544 0.96428 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.72 37.16 0.36 -0.91 16 2 C -0.09 -0.93 5.38 -27.88 -0.15 -1.08 16 3 C -0.06 -0.70 5.13 -104.62 -0.54 -1.24 16 4 C -0.12 -1.24 9.68 -39.58 -0.38 -1.62 16 5 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 6 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 7 C -0.11 -1.14 9.68 -39.58 -0.38 -1.52 16 8 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 9 C -0.11 -1.12 5.16 -29.04 -0.15 -1.27 16 10 C 0.51 6.88 7.02 -10.99 -0.08 6.81 16 11 O -0.54 -9.27 16.03 5.55 0.09 -9.18 16 12 N -0.73 -9.30 5.33 -60.30 -0.32 -9.62 16 13 C 0.13 1.85 5.08 -4.04 -0.02 1.83 16 14 C -0.12 -1.89 2.39 -90.34 -0.22 -2.11 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 16 C -0.10 -1.62 5.19 -26.53 -0.14 -1.76 16 17 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 18 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 19 N -0.59 -14.28 2.99 -172.32 -0.52 -14.79 16 20 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 21 H 0.06 1.64 7.88 -52.49 -0.41 1.22 16 22 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 23 N -0.90 -25.77 11.20 55.49 0.62 -25.15 16 24 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.15 3.04 5.59 -3.71 -0.02 3.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 6.80 -51.93 -0.35 0.12 16 32 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 33 H 0.07 0.87 6.42 -51.93 -0.33 0.53 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.11 0.94 5.62 -51.93 -0.29 0.65 16 39 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.40 4.53 7.70 -40.82 -0.31 4.22 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.05 0.93 7.13 -51.93 -0.37 0.56 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -31.69 400.66 -11.20 -42.89 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.70 Total: 3.64 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.38 Total: -9.98 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.22 Total: -49.56 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.69 -11.20 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275931906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.983 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds