Wall clock time and date at job start Tue Mar 31 2020 16:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47327 * 2 1 4 4 C 1.38252 * 120.00336 * 264.97989 * 3 2 1 5 5 C 1.38215 * 120.00005 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99991 * 0.02599 * 5 4 3 7 7 C 1.38218 * 120.00186 * 359.76548 * 6 5 4 8 8 C 1.38220 * 119.99552 * 84.99657 * 3 2 1 9 9 C 1.50699 * 119.99840 * 359.97438 * 8 3 2 10 10 C 1.50694 * 109.47447 * 84.99467 * 9 8 3 11 11 O 1.21283 * 120.00284 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00167 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00217 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47174 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.52392 * 304.91872 * 14 13 12 16 16 C 1.53349 * 109.68380 * 184.75409 * 14 13 12 17 17 C 1.53044 * 109.60552 * 178.74598 * 16 14 13 18 18 C 1.53192 * 109.31170 * 61.37285 * 17 16 14 19 19 N 1.46924 * 108.77717 * 305.36157 * 18 17 16 20 20 C 1.36936 * 120.63127 * 233.63784 * 19 18 17 21 21 H 1.07999 * 120.00022 * 151.80945 * 20 19 18 22 22 C 1.38813 * 120.00005 * 331.80020 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.09585 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.09475 * 22 20 19 25 25 H 1.48494 * 109.47083 * 60.00061 * 24 22 20 26 26 H 1.48500 * 109.46851 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47024 * 300.00112 * 24 22 20 28 28 C 1.46928 * 118.73859 * 53.61146 * 19 18 17 29 29 H 1.09003 * 109.47013 * 59.99900 * 1 2 3 30 30 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47149 * 299.99482 * 1 2 3 32 32 H 1.09003 * 109.46966 * 240.00408 * 2 1 3 33 33 H 1.08994 * 109.47452 * 120.00481 * 2 1 3 34 34 H 1.07998 * 120.00053 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.00170 * 179.97438 * 5 4 3 36 36 H 1.08000 * 120.00109 * 179.97438 * 6 5 4 37 37 H 1.07995 * 120.00417 * 180.25405 * 7 6 5 38 38 H 1.08997 * 109.47208 * 324.99080 * 9 8 3 39 39 H 1.09005 * 109.46569 * 204.99602 * 9 8 3 40 40 H 0.97001 * 119.99399 * 0.02562 * 12 10 9 41 41 H 1.08992 * 109.46852 * 60.00174 * 13 12 10 42 42 H 1.09002 * 109.46713 * 300.00150 * 13 12 10 43 43 H 1.08991 * 109.41943 * 58.70711 * 16 14 13 44 44 H 1.09003 * 109.42058 * 298.77951 * 16 14 13 45 45 H 1.08992 * 109.49619 * 301.41603 * 17 16 14 46 46 H 1.09005 * 109.49321 * 181.31918 * 17 16 14 47 47 H 1.09000 * 109.58292 * 185.57548 * 18 17 16 48 48 H 1.08996 * 109.70913 * 65.22193 * 18 17 16 49 49 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.58355 * 66.17510 * 28 19 18 51 51 H 1.08994 * 109.59076 * 186.46369 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3617 2.0377 -1.1927 5 6 2.8219 3.3409 -1.1926 6 6 2.9536 4.0275 0.0001 7 6 2.6203 3.4123 1.1922 8 6 2.1643 2.1071 1.1925 9 6 1.8053 1.4347 2.4925 10 6 2.9839 0.6370 2.9879 11 8 4.0140 0.6161 2.3481 12 7 2.8933 -0.0532 4.1420 13 6 4.0394 -0.8282 4.6239 14 6 3.6747 -1.5109 5.9436 15 1 3.3270 -0.7634 6.6566 16 6 4.9060 -2.2262 6.5127 17 6 4.5474 -2.8822 7.8481 18 6 3.4464 -3.9230 7.6218 19 7 2.3149 -3.2750 6.9447 20 6 1.0511 -3.3555 7.4658 21 1 0.3376 -2.5672 7.2763 22 6 0.6869 -4.4505 8.2373 23 7 1.4089 -5.5504 8.2012 24 14 -0.8280 -4.3630 9.3269 25 1 -2.0256 -4.1000 8.4893 26 1 -0.9977 -5.6527 10.0432 27 1 -0.6644 -3.2664 10.3149 28 6 2.5652 -2.5384 5.6983 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.2592 1.5012 -2.1244 35 1 3.0795 3.8227 -2.1243 36 1 3.3136 5.0457 0.0002 37 1 2.7193 3.9500 2.1235 38 1 0.9565 0.7692 2.3350 39 1 1.5417 2.1910 3.2320 40 1 2.0693 -0.0367 4.6535 41 1 4.8879 -0.1625 4.7811 42 1 4.3031 -1.5846 3.8846 43 1 5.7064 -1.5027 6.6668 44 1 5.2379 -2.9908 5.8102 45 1 4.1917 -2.1216 8.5431 46 1 5.4297 -3.3701 8.2623 47 1 3.1181 -4.3221 8.5815 48 1 3.8285 -4.7331 7.0007 49 1 1.1546 -6.3154 8.7406 50 1 2.8771 -3.2340 4.9193 51 1 1.6548 -2.0260 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275931906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:06 Heat of formation + Delta-G solvation = -33.607789 kcal Electronic energy + Delta-G solvation = -28304.035638 eV Core-core repulsion = 24587.839618 eV Total energy + Delta-G solvation = -3716.196020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27091 -40.03549 -39.18134 -36.22055 -35.19466 -34.64373 -33.53125 -32.28904 -31.89534 -30.37322 -28.79231 -27.23106 -26.40404 -24.70431 -23.83354 -23.13679 -22.44901 -21.73569 -21.14966 -20.50661 -18.69067 -17.97040 -17.46542 -17.11792 -16.83257 -16.66615 -16.26360 -15.84434 -15.71409 -15.33134 -15.03039 -14.88564 -14.62359 -14.50076 -14.33296 -14.09167 -13.89879 -13.84711 -13.71518 -13.65580 -13.02736 -12.96255 -12.83713 -12.79054 -12.64810 -12.47055 -12.29636 -12.15131 -11.97577 -11.81758 -11.69145 -11.57765 -11.54828 -11.33699 -11.09983 -10.87695 -10.51426 -10.03364 -9.66601 -9.45481 -8.66592 -7.85554 -5.31625 0.45433 0.54008 1.48259 1.50811 1.57130 1.68345 2.27788 2.52298 2.93656 3.29352 3.60897 3.69078 3.87023 3.98720 4.00192 4.02095 4.03893 4.11408 4.14194 4.31710 4.36230 4.41101 4.49278 4.55166 4.58615 4.62554 4.66557 4.72821 4.76477 4.78118 4.88999 4.91863 5.01294 5.03636 5.08580 5.10842 5.17577 5.23590 5.25765 5.33888 5.39182 5.40162 5.51187 5.58209 5.61680 5.65156 5.67755 5.77882 5.78904 6.17109 6.40195 6.59699 7.16114 7.28895 7.87563 8.39975 9.20702 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.002538 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.827479 B =11029.847372 C =11968.383434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.080 4.080 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.119 4.119 8 C -0.079 4.079 9 C -0.103 4.103 10 C 0.514 3.486 11 O -0.578 6.578 12 N -0.720 5.720 13 C 0.139 3.861 14 C -0.100 4.100 15 H 0.078 0.922 16 C -0.098 4.098 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.261 4.261 21 H 0.072 0.928 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.273 1.273 26 H -0.298 1.298 27 H -0.277 1.277 28 C 0.154 3.846 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.412 0.588 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.051 0.949 48 H -0.009 1.009 49 H 0.249 0.751 50 H 0.003 0.997 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 18.210 -14.471 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.080 4.080 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.137 4.137 8 C -0.079 4.079 9 C -0.142 4.142 10 C 0.302 3.698 11 O -0.457 6.457 12 N -0.372 5.372 13 C 0.015 3.985 14 C -0.120 4.120 15 H 0.096 0.904 16 C -0.136 4.136 17 C -0.169 4.169 18 C 0.047 3.953 19 N -0.332 5.332 20 C -0.391 4.391 21 H 0.090 0.910 22 C -0.248 4.248 23 N -0.583 5.583 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.225 1.225 27 H -0.203 1.203 28 C 0.028 3.972 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.249 0.751 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.009 0.991 49 H 0.058 0.942 50 H 0.021 0.979 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.910 18.026 -14.835 23.423 hybrid contribution -0.925 -0.770 0.917 1.513 sum 0.985 17.256 -13.918 22.191 Atomic orbital electron populations 1.21747 0.93302 1.02409 1.02575 1.20553 0.97158 0.92369 1.02405 1.19912 0.98705 0.96162 0.93182 1.21250 1.00253 0.95826 0.97707 1.21422 0.99203 0.94672 0.99019 1.21385 1.00462 1.00979 0.92406 1.21256 0.98754 0.94529 0.99184 1.19331 1.00566 0.94498 0.93534 1.20794 0.96628 1.00617 0.96199 1.20944 0.89590 0.79150 0.80116 1.90696 1.32938 1.64589 1.57507 1.46049 1.17568 1.49500 1.24117 1.21193 0.88633 0.94056 0.94613 1.21762 0.97079 0.97547 0.95608 0.90382 1.21390 0.96574 0.99236 0.96365 1.21993 0.98448 0.98992 0.97430 1.20626 0.86549 0.91767 0.96387 1.44295 1.04052 1.61237 1.23620 1.19515 0.90533 1.01525 1.27556 0.91014 1.25825 1.01091 0.94406 1.03489 1.70193 1.42552 1.02888 1.42692 0.85356 0.79810 0.76316 0.79058 1.19901 1.22461 1.20334 1.21004 0.96464 0.92426 0.87287 0.91901 0.91758 0.92090 0.90910 0.92673 0.84959 0.84112 0.84184 0.84999 0.86428 0.85509 0.75147 0.91329 0.92966 0.90307 0.92865 0.92749 0.91343 0.93052 0.99054 0.94232 0.97904 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.72 71.98 0.70 -1.62 16 2 C -0.09 -1.77 5.38 29.85 0.16 -1.61 16 3 C -0.08 -1.74 5.13 -19.86 -0.10 -1.84 16 4 C -0.13 -2.61 9.68 22.27 0.22 -2.39 16 5 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 6 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 7 C -0.12 -2.38 9.68 22.27 0.22 -2.16 16 8 C -0.08 -1.71 4.37 -19.86 -0.09 -1.80 16 9 C -0.10 -1.93 5.16 29.10 0.15 -1.78 16 10 C 0.51 13.15 7.02 87.65 0.62 13.77 16 11 O -0.58 -19.62 16.03 -3.04 -0.05 -19.67 16 12 N -0.72 -17.21 5.33 -463.07 -2.47 -19.68 16 13 C 0.14 3.78 5.08 86.38 0.44 4.22 16 14 C -0.10 -3.02 2.39 -10.61 -0.03 -3.05 16 15 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 16 C -0.10 -2.98 5.19 30.73 0.16 -2.82 16 17 C -0.13 -4.68 6.08 30.67 0.19 -4.49 16 18 C 0.17 8.23 5.30 86.36 0.46 8.69 16 19 N -0.61 -29.57 2.99 -699.11 -2.09 -31.67 16 20 C -0.26 -13.86 9.58 84.03 0.81 -13.05 16 21 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 22 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 23 N -0.94 -55.21 11.20 21.65 0.24 -54.97 16 24 Si 0.97 43.85 29.59 68.60 2.03 45.88 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 C 0.15 5.96 5.59 86.36 0.48 6.44 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.93 6.80 -2.39 -0.02 0.91 16 32 H 0.07 1.40 8.05 -2.39 -0.02 1.38 16 33 H 0.05 1.30 6.42 -2.39 -0.02 1.28 16 34 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.12 1.90 5.62 -2.39 -0.01 1.89 16 39 H 0.13 1.69 8.05 -2.38 -0.02 1.67 16 40 H 0.41 8.36 7.70 -92.71 -0.71 7.65 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 47 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 48 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 49 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 50 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.06 2.14 7.13 -2.39 -0.02 2.12 16 Total: -1.00 -69.67 400.66 3.09 -66.57 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.19 Total: 23.69 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.24 Total: -10.16 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.32 Total: -106.31 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.67 3.09 -66.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275931906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.965 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds