Wall clock time and date at job start Tue Mar 31 2020 16:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47396 * 2 1 4 4 C 1.38265 * 120.00001 * 265.01917 * 3 2 1 5 5 C 1.38214 * 120.00194 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00142 * 359.73989 * 6 5 4 8 8 C 1.38210 * 120.00327 * 84.99245 * 3 2 1 9 9 C 1.50703 * 119.99864 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.47406 * 84.99640 * 9 8 3 11 11 O 1.21279 * 120.00226 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00029 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47247 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.49703 * 54.93491 * 14 13 12 16 16 C 1.53035 * 109.50221 * 174.99881 * 14 13 12 17 17 C 1.53038 * 109.54104 * 181.31648 * 16 14 13 18 18 C 1.53190 * 109.31396 * 298.63620 * 17 16 14 19 19 N 1.46919 * 108.77480 * 54.63445 * 18 17 16 20 20 C 1.36935 * 120.63146 * 126.37369 * 19 18 17 21 21 H 1.08001 * 119.99930 * 332.77844 * 20 19 18 22 22 C 1.38813 * 120.00067 * 152.77865 * 20 19 18 23 23 N 1.31628 * 120.00014 * 159.76225 * 22 20 19 24 24 Si 1.86802 * 120.00108 * 339.75897 * 22 20 19 25 25 H 1.48497 * 109.46932 * 94.91307 * 24 22 20 26 26 H 1.48499 * 109.46952 * 214.91067 * 24 22 20 27 27 H 1.48503 * 109.47105 * 334.90966 * 24 22 20 28 28 C 1.46928 * 118.74145 * 306.38934 * 19 18 17 29 29 H 1.08998 * 109.47502 * 300.00382 * 1 2 3 30 30 H 1.08998 * 109.47012 * 60.00462 * 1 2 3 31 31 H 1.09007 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47221 * 239.99289 * 2 1 3 33 33 H 1.09005 * 109.46643 * 119.99390 * 2 1 3 34 34 H 1.08000 * 119.99549 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.99938 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.99992 * 179.97438 * 6 5 4 37 37 H 1.07999 * 119.99733 * 180.27800 * 7 6 5 38 38 H 1.08999 * 109.46993 * 324.99245 * 9 8 3 39 39 H 1.09002 * 109.46740 * 205.00073 * 9 8 3 40 40 H 0.97001 * 119.99925 * 0.27631 * 12 10 9 41 41 H 1.09000 * 109.47090 * 300.00066 * 13 12 10 42 42 H 1.08999 * 109.47290 * 60.00002 * 13 12 10 43 43 H 1.09004 * 109.46074 * 301.33785 * 16 14 13 44 44 H 1.09006 * 109.45912 * 61.30741 * 16 14 13 45 45 H 1.09003 * 109.49403 * 58.58989 * 17 16 14 46 46 H 1.08999 * 109.49682 * 178.68503 * 17 16 14 47 47 H 1.08997 * 109.58736 * 174.42604 * 18 17 16 48 48 H 1.09005 * 109.58562 * 294.85086 * 18 17 16 49 49 H 0.96998 * 119.99748 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.59076 * 293.82929 * 28 19 18 51 51 H 1.09001 * 109.58902 * 173.39659 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3608 2.0378 -1.1929 5 6 2.8211 3.3411 -1.1930 6 6 2.9526 4.0278 -0.0003 7 6 2.6186 3.4130 1.1917 8 6 2.1643 2.1071 1.1923 9 6 1.8062 1.4345 2.4925 10 6 2.9857 0.6378 2.9875 11 8 4.0158 0.6184 2.3478 12 7 2.8961 -0.0524 4.1417 13 6 4.0425 -0.8274 4.6225 14 6 3.6790 -1.5101 5.9426 15 1 2.7766 -2.1062 5.8075 16 6 4.8298 -2.4181 6.3820 17 6 4.4538 -3.1266 7.6854 18 6 4.2175 -2.0815 8.7802 19 7 3.2146 -1.1183 8.3060 20 6 2.0965 -0.8519 9.0502 21 1 1.7048 -1.6003 9.7233 22 6 1.4663 0.3800 8.9396 23 7 0.2128 0.5144 9.3179 24 14 2.3974 1.8471 8.2540 25 1 2.1229 1.9721 6.8000 26 1 1.9553 3.0827 8.9491 27 1 3.8541 1.6530 8.4680 28 6 3.4339 -0.4466 7.0178 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.2577 1.5015 -2.1246 35 1 3.0781 3.8229 -2.1247 36 1 3.3126 5.0461 -0.0003 37 1 2.7170 3.9510 2.1229 38 1 0.9579 0.7684 2.3354 39 1 1.5423 2.1906 3.2320 40 1 2.0711 -0.0395 4.6517 41 1 4.3056 -1.5838 3.8831 42 1 4.8913 -0.1616 4.7791 43 1 5.0225 -3.1606 5.6076 44 1 5.7258 -1.8179 6.5406 45 1 3.5439 -3.7074 7.5343 46 1 5.2644 -3.7908 7.9853 47 1 3.8540 -2.5733 9.6825 48 1 5.1506 -1.5610 8.9960 49 1 -0.2274 1.3753 9.2409 50 1 4.3031 0.2072 7.0898 51 1 2.5532 0.1403 6.7571 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275931912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:12 Heat of formation + Delta-G solvation = -11.188677 kcal Electronic energy + Delta-G solvation = -28812.654430 eV Core-core repulsion = 25097.430576 eV Total energy + Delta-G solvation = -3715.223854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.31340 -39.04972 -37.99638 -34.81972 -34.42010 -33.13787 -32.66159 -31.14154 -30.57634 -29.62141 -27.91765 -25.46431 -25.29461 -23.95730 -22.64503 -22.11156 -21.05190 -20.77821 -20.08892 -19.34831 -17.11115 -16.79760 -16.58628 -16.22150 -15.78325 -15.53097 -15.04596 -14.83613 -14.23533 -14.02216 -13.94476 -13.79270 -13.54559 -13.39572 -13.31181 -13.16866 -13.03706 -12.85440 -12.56213 -12.23221 -12.14226 -11.90671 -11.89110 -11.62585 -11.49757 -11.39426 -10.92599 -10.84353 -10.79099 -10.63161 -10.54525 -10.15761 -9.98878 -9.75376 -9.73323 -9.49789 -8.89433 -8.85369 -8.68251 -8.64737 -7.02780 -6.01060 -3.36720 1.26533 1.34122 2.75162 3.21685 3.30514 3.43187 3.46286 3.77402 4.45313 4.52884 4.63407 4.78509 4.79988 4.86365 5.00445 5.02360 5.12430 5.14760 5.21670 5.23357 5.29156 5.33116 5.40517 5.40893 5.47030 5.53382 5.59117 5.74351 5.77836 5.78847 5.84051 5.92344 6.01537 6.01852 6.07680 6.10749 6.11780 6.27750 6.31310 6.40371 6.43316 6.50912 6.53023 6.56548 6.58946 6.65777 6.70747 6.93574 6.94235 7.63946 7.90257 8.27122 8.34344 8.88418 9.65853 10.04446 11.14813 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.003205 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.063393 B = 8733.145170 C = 9498.003561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.057 4.057 9 C -0.112 4.112 10 C 0.515 3.485 11 O -0.538 6.538 12 N -0.727 5.727 13 C 0.127 3.873 14 C -0.119 4.119 15 H 0.080 0.920 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.146 3.854 19 N -0.606 5.606 20 C -0.258 4.258 21 H 0.086 0.914 22 C 0.023 3.977 23 N -0.908 5.908 24 Si 0.880 3.120 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.271 1.271 28 C 0.135 3.865 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.405 0.595 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.026 0.974 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 0.272 -18.514 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.058 4.058 9 C -0.152 4.152 10 C 0.300 3.700 11 O -0.415 6.415 12 N -0.379 5.379 13 C 0.003 3.997 14 C -0.140 4.140 15 H 0.098 0.902 16 C -0.139 4.139 17 C -0.174 4.174 18 C 0.020 3.980 19 N -0.329 5.329 20 C -0.386 4.386 21 H 0.104 0.896 22 C -0.176 4.176 23 N -0.551 5.551 24 Si 0.711 3.289 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.009 3.991 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.240 0.760 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.040 0.960 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.942 0.352 -18.890 19.300 hybrid contribution 0.086 1.044 -0.043 1.048 sum 4.029 1.396 -18.933 19.407 Atomic orbital electron populations 1.21782 0.94612 1.01904 1.02234 1.20564 0.96025 0.92860 1.03088 1.19666 0.98390 0.95757 0.92593 1.20955 1.00337 0.95207 0.97247 1.21079 0.99998 0.94839 0.97934 1.21053 1.00755 0.99938 0.92537 1.21016 0.98535 0.94494 0.98272 1.19116 0.99665 0.93930 0.93075 1.20796 0.97841 1.00455 0.96098 1.20421 0.89377 0.79486 0.80673 1.90699 1.31049 1.63094 1.56615 1.46133 1.17579 1.50184 1.24046 1.21428 0.88396 0.94561 0.95336 1.21977 0.99662 0.98605 0.93739 0.90188 1.21344 0.97295 0.97880 0.97381 1.21990 1.00660 0.98504 0.96204 1.20959 0.91714 0.90217 0.95078 1.44348 1.22637 1.48486 1.17472 1.18956 1.00439 0.98139 1.21112 0.89607 1.25273 0.96080 0.97287 0.98948 1.69835 1.09660 1.24657 1.50940 0.87002 0.81142 0.83452 0.77318 1.21737 1.23160 1.19599 1.21362 0.99205 0.93172 0.85375 0.92365 0.92503 0.92210 0.91062 0.90986 0.86294 0.86323 0.86232 0.86192 0.87629 0.87881 0.75999 0.91771 0.91781 0.92779 0.92360 0.91939 0.92575 0.91910 0.96009 0.92767 0.95618 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.72 37.16 0.36 -0.93 16 2 C -0.09 -0.92 5.38 -27.89 -0.15 -1.07 16 3 C -0.06 -0.77 5.13 -104.63 -0.54 -1.31 16 4 C -0.12 -1.31 9.68 -39.58 -0.38 -1.69 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 7 C -0.11 -1.31 9.68 -39.58 -0.38 -1.69 16 8 C -0.06 -0.74 4.37 -104.62 -0.46 -1.20 16 9 C -0.11 -1.39 5.16 -29.03 -0.15 -1.54 16 10 C 0.51 7.82 7.03 -10.99 -0.08 7.74 16 11 O -0.54 -9.84 16.03 5.56 0.09 -9.75 16 12 N -0.73 -10.89 5.33 -60.30 -0.32 -11.21 16 13 C 0.13 1.93 5.07 -4.04 -0.02 1.91 16 14 C -0.12 -1.95 2.37 -90.50 -0.21 -2.17 16 15 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 16 C -0.10 -1.48 5.17 -26.69 -0.14 -1.62 16 17 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 18 C 0.15 2.78 6.52 -3.72 -0.02 2.76 16 19 N -0.61 -13.85 2.77 -172.32 -0.48 -14.33 16 20 C -0.26 -6.98 10.04 -15.06 -0.15 -7.13 16 21 H 0.09 2.48 8.05 -52.49 -0.42 2.06 16 22 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 23 N -0.91 -26.91 13.97 55.49 0.78 -26.13 16 24 Si 0.88 21.73 24.35 -169.99 -4.14 17.59 16 25 H -0.29 -6.66 6.70 56.52 0.38 -6.29 16 26 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 27 H -0.27 -6.72 6.46 56.52 0.36 -6.35 16 28 C 0.13 2.77 3.28 -3.71 -0.01 2.76 16 29 H 0.06 0.51 6.80 -51.93 -0.35 0.16 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 33 H 0.07 0.84 6.42 -51.93 -0.33 0.51 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.11 1.10 5.62 -51.93 -0.29 0.81 16 39 H 0.10 1.17 8.05 -51.93 -0.42 0.76 16 40 H 0.40 5.85 7.72 -40.82 -0.31 5.53 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.03 0.55 6.98 -51.93 -0.36 0.19 16 51 H 0.07 1.52 3.71 -51.93 -0.19 1.33 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -32.13 394.04 -10.16 -42.28 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.63 Total: 5.92 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.39 Total: -10.31 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.02 Total: -51.67 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.13 -10.16 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275931912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.096 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds