Wall clock time and date at job start Tue Mar 31 2020 16:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47396 * 2 1 4 4 C 1.38265 * 120.00001 * 265.01917 * 3 2 1 5 5 C 1.38214 * 120.00194 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00142 * 359.73989 * 6 5 4 8 8 C 1.38210 * 120.00327 * 84.99245 * 3 2 1 9 9 C 1.50703 * 119.99864 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.47406 * 84.99640 * 9 8 3 11 11 O 1.21279 * 120.00226 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00029 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47247 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.49703 * 54.93491 * 14 13 12 16 16 C 1.53035 * 109.50221 * 174.99881 * 14 13 12 17 17 C 1.53038 * 109.54104 * 181.31648 * 16 14 13 18 18 C 1.53190 * 109.31396 * 298.63620 * 17 16 14 19 19 N 1.46919 * 108.77480 * 54.63445 * 18 17 16 20 20 C 1.36935 * 120.63146 * 126.37369 * 19 18 17 21 21 H 1.08001 * 119.99930 * 332.77844 * 20 19 18 22 22 C 1.38813 * 120.00067 * 152.77865 * 20 19 18 23 23 N 1.31628 * 120.00014 * 159.76225 * 22 20 19 24 24 Si 1.86802 * 120.00108 * 339.75897 * 22 20 19 25 25 H 1.48497 * 109.46932 * 94.91307 * 24 22 20 26 26 H 1.48499 * 109.46952 * 214.91067 * 24 22 20 27 27 H 1.48503 * 109.47105 * 334.90966 * 24 22 20 28 28 C 1.46928 * 118.74145 * 306.38934 * 19 18 17 29 29 H 1.08998 * 109.47502 * 300.00382 * 1 2 3 30 30 H 1.08998 * 109.47012 * 60.00462 * 1 2 3 31 31 H 1.09007 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47221 * 239.99289 * 2 1 3 33 33 H 1.09005 * 109.46643 * 119.99390 * 2 1 3 34 34 H 1.08000 * 119.99549 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.99938 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.99992 * 179.97438 * 6 5 4 37 37 H 1.07999 * 119.99733 * 180.27800 * 7 6 5 38 38 H 1.08999 * 109.46993 * 324.99245 * 9 8 3 39 39 H 1.09002 * 109.46740 * 205.00073 * 9 8 3 40 40 H 0.97001 * 119.99925 * 0.27631 * 12 10 9 41 41 H 1.09000 * 109.47090 * 300.00066 * 13 12 10 42 42 H 1.08999 * 109.47290 * 60.00002 * 13 12 10 43 43 H 1.09004 * 109.46074 * 301.33785 * 16 14 13 44 44 H 1.09006 * 109.45912 * 61.30741 * 16 14 13 45 45 H 1.09003 * 109.49403 * 58.58989 * 17 16 14 46 46 H 1.08999 * 109.49682 * 178.68503 * 17 16 14 47 47 H 1.08997 * 109.58736 * 174.42604 * 18 17 16 48 48 H 1.09005 * 109.58562 * 294.85086 * 18 17 16 49 49 H 0.96998 * 119.99748 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.59076 * 293.82929 * 28 19 18 51 51 H 1.09001 * 109.58902 * 173.39659 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3608 2.0378 -1.1929 5 6 2.8211 3.3411 -1.1930 6 6 2.9526 4.0278 -0.0003 7 6 2.6186 3.4130 1.1917 8 6 2.1643 2.1071 1.1923 9 6 1.8062 1.4345 2.4925 10 6 2.9857 0.6378 2.9875 11 8 4.0158 0.6184 2.3478 12 7 2.8961 -0.0524 4.1417 13 6 4.0425 -0.8274 4.6225 14 6 3.6790 -1.5101 5.9426 15 1 2.7766 -2.1062 5.8075 16 6 4.8298 -2.4181 6.3820 17 6 4.4538 -3.1266 7.6854 18 6 4.2175 -2.0815 8.7802 19 7 3.2146 -1.1183 8.3060 20 6 2.0965 -0.8519 9.0502 21 1 1.7048 -1.6003 9.7233 22 6 1.4663 0.3800 8.9396 23 7 0.2128 0.5144 9.3179 24 14 2.3974 1.8471 8.2540 25 1 2.1229 1.9721 6.8000 26 1 1.9553 3.0827 8.9491 27 1 3.8541 1.6530 8.4680 28 6 3.4339 -0.4466 7.0178 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.2577 1.5015 -2.1246 35 1 3.0781 3.8229 -2.1247 36 1 3.3126 5.0461 -0.0003 37 1 2.7170 3.9510 2.1229 38 1 0.9579 0.7684 2.3354 39 1 1.5423 2.1906 3.2320 40 1 2.0711 -0.0395 4.6517 41 1 4.3056 -1.5838 3.8831 42 1 4.8913 -0.1616 4.7791 43 1 5.0225 -3.1606 5.6076 44 1 5.7258 -1.8179 6.5406 45 1 3.5439 -3.7074 7.5343 46 1 5.2644 -3.7908 7.9853 47 1 3.8540 -2.5733 9.6825 48 1 5.1506 -1.5610 8.9960 49 1 -0.2274 1.3753 9.2409 50 1 4.3031 0.2072 7.0898 51 1 2.5532 0.1403 6.7571 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275931912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:10 Heat of formation + Delta-G solvation = -29.600682 kcal Electronic energy + Delta-G solvation = -28813.452835 eV Core-core repulsion = 25097.430576 eV Total energy + Delta-G solvation = -3716.022259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.35083 -40.16434 -39.37847 -36.22656 -35.22768 -34.82851 -33.63096 -32.82087 -32.07669 -30.41647 -28.91903 -27.20208 -26.65571 -24.74308 -24.16908 -23.12153 -22.38709 -21.82509 -21.21474 -20.71111 -18.84606 -18.16710 -17.54557 -17.28953 -17.14926 -16.75799 -16.22413 -15.93573 -15.77452 -15.44609 -15.07515 -15.02439 -14.75879 -14.62858 -14.52451 -14.36587 -14.04571 -13.91609 -13.83487 -13.72090 -13.37151 -13.09529 -13.01741 -12.84986 -12.67328 -12.56560 -12.20581 -12.17583 -12.08986 -11.72080 -11.70253 -11.58883 -11.57830 -11.38943 -11.27356 -10.96932 -10.66211 -10.12604 -9.71349 -9.49732 -8.92657 -8.16743 -5.47982 0.40956 0.49513 1.24229 1.40210 1.47146 1.58003 2.20300 2.38296 2.88596 3.04177 3.32194 3.62582 3.82979 3.83260 3.90877 3.91845 3.97659 4.04285 4.06712 4.28002 4.29686 4.30917 4.45622 4.45907 4.49074 4.49895 4.60667 4.61940 4.70062 4.71409 4.72847 4.77834 4.88256 4.97308 5.00770 5.06077 5.09668 5.14195 5.19605 5.21490 5.23565 5.29937 5.37839 5.43066 5.57638 5.58570 5.60889 5.73584 5.87144 6.12740 6.13208 6.45990 6.91921 7.16476 7.62468 8.03597 9.03115 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.003205 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.063393 B = 8733.145170 C = 9498.003561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.078 4.078 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.134 4.134 7 C -0.126 4.126 8 C -0.078 4.078 9 C -0.108 4.108 10 C 0.516 3.484 11 O -0.570 6.570 12 N -0.728 5.728 13 C 0.133 3.867 14 C -0.105 4.105 15 H 0.076 0.924 16 C -0.099 4.099 17 C -0.124 4.124 18 C 0.137 3.863 19 N -0.621 5.621 20 C -0.247 4.247 21 H 0.054 0.946 22 C -0.028 4.028 23 N -0.953 5.953 24 Si 0.938 3.062 25 H -0.265 1.265 26 H -0.315 1.315 27 H -0.272 1.272 28 C 0.132 3.868 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.407 0.593 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.053 0.947 48 H 0.030 0.970 49 H 0.262 0.738 50 H 0.022 0.978 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 -0.056 -20.903 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.078 4.078 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.152 4.152 7 C -0.144 4.144 8 C -0.078 4.078 9 C -0.148 4.148 10 C 0.304 3.696 11 O -0.449 6.449 12 N -0.380 5.380 13 C 0.009 3.991 14 C -0.126 4.126 15 H 0.094 0.906 16 C -0.137 4.137 17 C -0.163 4.163 18 C 0.012 3.988 19 N -0.345 5.345 20 C -0.377 4.377 21 H 0.071 0.929 22 C -0.223 4.223 23 N -0.600 5.600 24 Si 0.767 3.233 25 H -0.192 1.192 26 H -0.244 1.244 27 H -0.197 1.197 28 C 0.007 3.993 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.243 0.757 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.040 0.960 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.312 -0.002 -21.296 21.948 hybrid contribution -0.298 1.074 0.735 1.335 sum 5.014 1.072 -20.561 21.191 Atomic orbital electron populations 1.21756 0.93382 1.02604 1.02382 1.20561 0.97056 0.92013 1.02696 1.19930 0.98570 0.96458 0.92819 1.21286 0.99890 0.95672 0.97752 1.21443 0.99053 0.94775 0.98812 1.21358 1.00474 1.00949 0.92382 1.21232 0.99267 0.94800 0.99084 1.19267 1.00730 0.94381 0.93468 1.20815 0.97101 1.00556 0.96294 1.20843 0.89619 0.79040 0.80140 1.90676 1.32477 1.64285 1.57512 1.46194 1.17617 1.50102 1.24084 1.21349 0.88194 0.94647 0.94895 1.21794 1.00518 0.97496 0.92776 0.90594 1.21379 0.96463 0.98200 0.97665 1.21886 1.01560 0.97608 0.95260 1.21182 0.90834 0.90425 0.96320 1.44498 1.22392 1.49349 1.18261 1.18894 1.01247 0.97228 1.20307 0.92870 1.25791 0.96557 0.99569 1.00378 1.69951 1.11198 1.25110 1.53702 0.86055 0.79476 0.79702 0.78019 1.19163 1.24392 1.19697 1.21362 0.98112 0.94203 0.85593 0.92710 0.91853 0.91217 0.90231 0.92537 0.84283 0.83750 0.84354 0.86044 0.85971 0.87134 0.75722 0.90407 0.92504 0.89772 0.91749 0.92735 0.89323 0.92815 0.95162 0.92908 0.96038 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.72 71.98 0.70 -1.58 16 2 C -0.09 -1.68 5.38 29.84 0.16 -1.52 16 3 C -0.08 -1.77 5.13 -19.87 -0.10 -1.88 16 4 C -0.13 -2.57 9.68 22.27 0.22 -2.35 16 5 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 6 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 7 C -0.13 -3.04 9.68 22.27 0.22 -2.82 16 8 C -0.08 -1.94 4.37 -19.86 -0.09 -2.03 16 9 C -0.11 -2.58 5.16 29.10 0.15 -2.43 16 10 C 0.52 15.18 7.03 87.66 0.62 15.80 16 11 O -0.57 -20.44 16.03 -3.03 -0.05 -20.49 16 12 N -0.73 -20.82 5.33 -463.08 -2.47 -23.29 16 13 C 0.13 3.78 5.07 86.38 0.44 4.22 16 14 C -0.11 -3.23 2.37 -10.72 -0.03 -3.26 16 15 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 16 C -0.10 -2.58 5.17 30.62 0.16 -2.42 16 17 C -0.12 -3.51 6.08 30.67 0.19 -3.32 16 18 C 0.14 5.05 6.52 86.36 0.56 5.61 16 19 N -0.62 -28.13 2.77 -699.09 -1.94 -30.07 16 20 C -0.25 -13.63 10.04 84.03 0.84 -12.78 16 21 H 0.05 3.22 8.05 -2.91 -0.02 3.20 16 22 C -0.03 -1.58 5.24 84.86 0.44 -1.14 16 23 N -0.95 -58.09 13.97 21.65 0.30 -57.79 16 24 Si 0.94 45.40 24.35 68.60 1.67 47.07 16 25 H -0.27 -11.64 6.70 99.48 0.67 -10.98 16 26 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 27 H -0.27 -13.05 6.46 99.48 0.64 -12.41 16 28 C 0.13 5.28 3.28 86.36 0.28 5.56 16 29 H 0.05 0.89 6.80 -2.39 -0.02 0.88 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 33 H 0.06 1.27 6.42 -2.38 -0.02 1.26 16 34 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.12 2.43 5.62 -2.39 -0.01 2.41 16 39 H 0.11 2.42 8.05 -2.39 -0.02 2.40 16 40 H 0.41 11.31 7.72 -92.71 -0.72 10.59 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 48 H 0.03 1.07 8.14 -2.38 -0.02 1.06 16 49 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 50 H 0.02 0.89 6.98 -2.39 -0.02 0.87 16 51 H 0.05 2.24 3.71 -2.39 -0.01 2.23 16 Total: -1.00 -70.37 394.04 2.82 -67.56 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.09 Total: 27.99 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.21 Total: -10.99 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.10 Total: -111.14 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.67 Total: 47.07 kcal Total: -70.37 2.82 -67.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275931912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.956 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds