Wall clock time and date at job start Tue Mar 31 2020 16:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52943 * 1 3 3 C 1.50703 * 108.30239 * 2 1 4 4 C 1.38231 * 120.00008 * 172.23683 * 3 2 1 5 5 C 1.38237 * 120.00336 * 179.79198 * 4 3 2 6 6 C 1.38237 * 119.99559 * 0.44370 * 5 4 3 7 7 C 1.38235 * 119.99994 * 359.81271 * 6 5 4 8 8 C 1.38235 * 119.99909 * 352.51790 * 3 2 1 9 9 C 1.48861 * 112.40664 * 239.59863 * 2 1 3 10 10 C 1.53882 * 115.48873 * 328.00110 * 9 2 1 11 11 C 1.54629 * 111.71141 * 291.24190 * 10 9 2 12 12 N 1.43350 * 116.59648 * 355.74385 * 11 10 9 13 13 C 1.34688 * 120.90009 * 253.52402 * 12 11 10 14 14 O 1.21590 * 119.99720 * 5.74120 * 13 12 11 15 15 N 1.34774 * 119.99766 * 185.74404 * 13 12 11 16 16 C 1.46503 * 119.99591 * 185.04448 * 15 13 12 17 17 C 1.53001 * 109.46802 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99768 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99693 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00399 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99652 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46961 * 90.00416 * 22 20 18 24 24 H 1.48493 * 109.47316 * 210.00266 * 22 20 18 25 25 H 1.48497 * 109.47022 * 330.00583 * 22 20 18 26 26 C 1.50336 * 118.32252 * 74.27848 * 12 11 10 27 27 C 1.45281 * 108.43491 * 273.24166 * 26 12 11 28 28 H 1.09004 * 109.47210 * 180.40621 * 1 2 3 29 29 H 1.09004 * 109.46628 * 300.40317 * 1 2 3 30 30 H 1.08994 * 109.47598 * 60.40000 * 1 2 3 31 31 H 1.08005 * 119.99721 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.00500 * 180.27603 * 5 4 3 33 33 H 1.07997 * 120.00154 * 179.83772 * 6 5 4 34 34 H 1.08004 * 120.00127 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.00259 * 359.97244 * 8 3 2 36 36 H 1.10152 * 108.42332 * 89.71106 * 9 2 1 37 37 H 1.09776 * 109.03266 * 204.98501 * 9 2 1 38 38 H 1.08466 * 112.06764 * 55.82506 * 10 9 2 39 39 H 1.10426 * 108.06862 * 173.01731 * 10 9 2 40 40 H 1.09123 * 108.19892 * 233.82567 * 11 10 9 41 41 H 1.09154 * 108.14338 * 117.60446 * 11 10 9 42 42 H 0.96995 * 120.00341 * 5.04566 * 15 13 12 43 43 H 1.09009 * 109.46893 * 299.99401 * 16 15 13 44 44 H 1.08994 * 109.47841 * 59.99862 * 16 15 13 45 45 H 1.08998 * 109.47203 * 299.99593 * 17 16 15 46 46 H 1.08997 * 109.47425 * 59.99729 * 17 16 15 47 47 H 0.97006 * 120.00048 * 179.97438 * 21 20 18 48 48 H 1.09736 * 108.81280 * 154.20320 * 26 12 11 49 49 H 1.08818 * 110.02000 * 35.51339 * 26 12 11 50 50 H 1.09649 * 108.46236 * 301.42092 * 27 26 12 51 51 H 1.09851 * 107.94269 * 186.67684 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5294 0.0000 0.0000 3 6 2.0027 1.4308 0.0000 4 6 3.3459 1.7145 0.1617 5 6 3.7806 3.0267 0.1574 6 6 2.8709 4.0557 0.0006 7 6 1.5270 3.7722 -0.1558 8 6 1.0928 2.4597 -0.1559 9 6 2.0969 -0.6964 -1.1870 10 6 1.2602 -1.8683 -1.7298 11 6 1.2505 -3.0657 -0.7514 12 7 2.0686 -2.9444 0.4194 13 6 3.2176 -3.6376 0.5352 14 8 3.6268 -4.2969 -0.4009 15 7 3.9137 -3.6004 1.6886 16 6 5.2172 -4.2630 1.7792 17 6 5.7900 -4.0715 3.1850 18 6 7.1306 -4.7537 3.2784 19 1 7.5334 -5.2723 2.4210 20 6 7.8426 -4.7157 4.4584 21 7 7.3518 -4.0846 5.5026 22 14 9.5040 -5.5618 4.5744 23 1 10.5738 -4.6072 4.1874 24 1 9.7300 -6.0198 5.9687 25 1 9.5290 -6.7310 3.6591 26 6 1.6034 -2.0366 1.5237 27 6 2.0715 -0.6909 1.2401 28 1 -0.3634 -1.0277 0.0073 29 1 -0.3633 0.5201 0.8864 30 1 -0.3634 0.5076 -0.8935 31 1 4.0562 0.9107 0.2876 32 1 4.8306 3.2482 0.2793 33 1 3.2101 5.0810 -0.0002 34 1 0.8162 4.5760 -0.2788 35 1 0.0429 2.2383 -0.2781 36 1 2.2247 0.0410 -1.9952 37 1 3.1029 -1.0605 -0.9414 38 1 0.2465 -1.5677 -1.9715 39 1 1.7216 -2.2106 -2.6729 40 1 1.5718 -3.9543 -1.2972 41 1 0.2213 -3.2321 -0.4282 42 1 3.5517 -3.1349 2.4588 43 1 5.0983 -5.3277 1.5776 44 1 5.8975 -3.8283 1.0470 45 1 5.9088 -3.0070 3.3870 46 1 5.1096 -4.5066 3.9169 47 1 7.8527 -4.0582 6.3329 48 1 2.0348 -2.3825 2.4716 49 1 0.5188 -2.0742 1.6048 50 1 3.1654 -0.7119 1.1674 51 1 1.8327 -0.0598 2.1069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286810329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:55 Heat of formation + Delta-G solvation = -10.478431 kcal Electronic energy + Delta-G solvation = -29037.426176 eV Core-core repulsion = 25322.233120 eV Total energy + Delta-G solvation = -3715.193056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97931 -39.55839 -37.68639 -35.07256 -34.60559 -33.17064 -32.41585 -31.28186 -30.45242 -29.50135 -28.24642 -26.85526 -25.08251 -24.39867 -22.58562 -22.25690 -21.82551 -20.85148 -19.20111 -18.78708 -17.85410 -17.23566 -16.45999 -16.03756 -15.60056 -15.35908 -15.14354 -14.98557 -14.53248 -14.39849 -14.29870 -13.99370 -13.78790 -13.57903 -13.14341 -13.09649 -12.98935 -12.64289 -12.46256 -12.27385 -12.05416 -11.82786 -11.77306 -11.36979 -11.28403 -11.12294 -11.02070 -10.85264 -10.68614 -10.61082 -10.50606 -10.30543 -10.25116 -9.82320 -9.52021 -9.24310 -9.05899 -8.86762 -8.68533 -8.44349 -8.14372 -6.08129 -4.10550 1.21152 1.25895 2.93962 3.30352 3.36506 3.41147 3.60560 3.63257 4.19113 4.28972 4.41771 4.47066 4.66520 4.82951 4.84482 4.90595 4.96115 4.97137 5.04679 5.20110 5.24654 5.29079 5.30548 5.37103 5.42455 5.49265 5.55233 5.64327 5.67260 5.79317 5.84323 5.88805 5.89499 5.96800 6.01786 6.13560 6.14633 6.20297 6.31423 6.36160 6.39641 6.42268 6.54222 6.76664 6.79931 6.86376 7.04804 7.26744 7.57402 7.64743 7.91148 8.26740 8.40546 8.94502 9.04723 9.54161 11.03521 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.002946 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.193747 B = 9502.138912 C =11045.317740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.002 4.002 3 C -0.069 4.069 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.099 4.099 10 C -0.127 4.127 11 C 0.129 3.871 12 N -0.627 5.627 13 C 0.704 3.296 14 O -0.596 6.596 15 N -0.739 5.739 16 C 0.140 3.860 17 C 0.014 3.986 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.121 3.879 27 C -0.133 4.133 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.391 0.609 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.925 14.854 -10.676 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.002 4.002 3 C -0.069 4.069 4 C -0.131 4.131 5 C -0.135 4.135 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.140 4.140 9 C -0.136 4.136 10 C -0.166 4.166 11 C 0.003 3.997 12 N -0.365 5.365 13 C 0.405 3.595 14 O -0.475 6.475 15 N -0.394 5.394 16 C 0.017 3.983 17 C -0.024 4.024 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.001 4.001 27 C -0.171 4.171 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.227 0.773 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.502 14.377 -11.171 25.255 hybrid contribution 0.885 0.017 0.584 1.061 sum -16.616 14.394 -10.587 24.401 Atomic orbital electron populations 1.21948 0.93951 1.02239 1.01729 1.18300 0.95670 0.90541 0.95691 1.19907 0.93399 0.94668 0.98878 1.21125 0.95519 0.96767 0.99692 1.21183 0.99721 0.92840 0.99787 1.21140 0.93541 0.99060 1.00840 1.21132 0.95811 0.96536 1.00544 1.21189 0.99746 0.92241 1.00782 1.21075 0.99821 0.96343 0.96405 1.22420 1.00248 0.95252 0.98676 1.20738 0.93545 0.98541 0.86830 1.47174 1.23420 1.47577 1.18340 1.15923 0.79795 0.80029 0.83717 1.90878 1.69862 1.47198 1.39576 1.45652 1.22458 1.59174 1.12121 1.21578 0.80095 0.95875 1.00766 1.19311 0.96054 0.97712 0.89281 1.21052 1.02926 1.34136 0.97744 0.92246 1.24986 0.98214 0.95402 0.95666 1.69953 1.38415 1.42702 1.02276 0.86523 0.83912 0.79913 0.77275 1.20577 1.21188 1.19720 1.20758 1.00469 0.88855 0.90042 1.20664 1.02201 0.96234 0.98005 0.91835 0.92305 0.92230 0.85983 0.86116 0.86404 0.86368 0.85625 0.92959 0.91627 0.91219 0.92170 0.90012 0.92682 0.77342 0.92780 0.92971 0.96078 0.96032 0.92886 0.90230 0.90044 0.91189 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 5.90 37.13 0.22 -0.80 16 2 C 0.00 -0.02 0.57 -158.25 -0.09 -0.11 16 3 C -0.07 -0.68 4.38 -104.62 -0.46 -1.14 16 4 C -0.11 -1.23 8.86 -39.58 -0.35 -1.58 16 5 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 6 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 7 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 8 C -0.12 -1.09 8.93 -39.58 -0.35 -1.44 16 9 C -0.10 -1.05 4.02 -28.30 -0.11 -1.16 16 10 C -0.13 -1.24 5.29 -25.42 -0.13 -1.38 16 11 C 0.13 1.48 5.39 -4.85 -0.03 1.45 16 12 N -0.63 -8.25 2.05 -181.52 -0.37 -8.62 16 13 C 0.70 12.57 8.29 -87.00 -0.72 11.85 16 14 O -0.60 -13.02 15.78 5.29 0.08 -12.93 16 15 N -0.74 -13.35 5.46 -65.25 -0.36 -13.71 16 16 C 0.14 3.04 5.62 -4.04 -0.02 3.02 16 17 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 18 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 22 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.12 1.21 5.35 -5.52 -0.03 1.18 16 27 C -0.13 -1.32 3.36 -30.89 -0.10 -1.42 16 28 H 0.06 0.44 5.52 -51.93 -0.29 0.15 16 29 H 0.06 0.39 7.77 -51.93 -0.40 -0.01 16 30 H 0.06 0.40 7.10 -51.93 -0.37 0.03 16 31 H 0.12 1.39 7.04 -52.48 -0.37 1.02 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.13 0.90 5.81 -52.49 -0.30 0.60 16 36 H 0.05 0.56 7.78 -51.27 -0.40 0.16 16 37 H 0.07 0.88 7.20 -51.49 -0.37 0.51 16 38 H 0.07 0.54 7.12 -52.23 -0.37 0.17 16 39 H 0.06 0.63 8.26 -51.11 -0.42 0.21 16 40 H 0.08 1.13 7.02 -51.86 -0.36 0.76 16 41 H 0.05 0.51 7.91 -51.84 -0.41 0.10 16 42 H 0.39 6.21 6.10 -40.82 -0.25 5.96 16 43 H 0.05 1.24 8.14 -51.92 -0.42 0.82 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.08 0.81 6.06 -51.51 -0.31 0.49 16 49 H 0.08 0.65 7.02 -52.03 -0.37 0.28 16 50 H 0.07 0.84 6.58 -51.56 -0.34 0.50 16 51 H 0.07 0.64 8.09 -51.45 -0.42 0.22 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -32.39 388.35 -11.26 -43.65 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.25 Total: 3.86 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.93 Total: -9.15 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.01 Total: -47.73 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.39 -11.26 -43.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286810329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.175 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds