Wall clock time and date at job start Tue Mar 31 2020 16:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52943 * 1 3 3 C 1.50703 * 108.30239 * 2 1 4 4 C 1.38231 * 120.00008 * 172.23683 * 3 2 1 5 5 C 1.38237 * 120.00336 * 179.79198 * 4 3 2 6 6 C 1.38237 * 119.99559 * 0.44370 * 5 4 3 7 7 C 1.38235 * 119.99994 * 359.81271 * 6 5 4 8 8 C 1.38235 * 119.99909 * 352.51790 * 3 2 1 9 9 C 1.48861 * 112.40664 * 239.59863 * 2 1 3 10 10 C 1.53882 * 115.48873 * 328.00110 * 9 2 1 11 11 C 1.54629 * 111.71141 * 291.24190 * 10 9 2 12 12 N 1.43350 * 116.59648 * 355.74385 * 11 10 9 13 13 C 1.34688 * 120.90009 * 253.52402 * 12 11 10 14 14 O 1.21590 * 119.99720 * 5.74120 * 13 12 11 15 15 N 1.34774 * 119.99766 * 185.74404 * 13 12 11 16 16 C 1.46503 * 119.99591 * 185.04448 * 15 13 12 17 17 C 1.53001 * 109.46802 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99768 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99693 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00399 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99652 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46961 * 90.00416 * 22 20 18 24 24 H 1.48493 * 109.47316 * 210.00266 * 22 20 18 25 25 H 1.48497 * 109.47022 * 330.00583 * 22 20 18 26 26 C 1.50336 * 118.32252 * 74.27848 * 12 11 10 27 27 C 1.45281 * 108.43491 * 273.24166 * 26 12 11 28 28 H 1.09004 * 109.47210 * 180.40621 * 1 2 3 29 29 H 1.09004 * 109.46628 * 300.40317 * 1 2 3 30 30 H 1.08994 * 109.47598 * 60.40000 * 1 2 3 31 31 H 1.08005 * 119.99721 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.00500 * 180.27603 * 5 4 3 33 33 H 1.07997 * 120.00154 * 179.83772 * 6 5 4 34 34 H 1.08004 * 120.00127 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.00259 * 359.97244 * 8 3 2 36 36 H 1.10152 * 108.42332 * 89.71106 * 9 2 1 37 37 H 1.09776 * 109.03266 * 204.98501 * 9 2 1 38 38 H 1.08466 * 112.06764 * 55.82506 * 10 9 2 39 39 H 1.10426 * 108.06862 * 173.01731 * 10 9 2 40 40 H 1.09123 * 108.19892 * 233.82567 * 11 10 9 41 41 H 1.09154 * 108.14338 * 117.60446 * 11 10 9 42 42 H 0.96995 * 120.00341 * 5.04566 * 15 13 12 43 43 H 1.09009 * 109.46893 * 299.99401 * 16 15 13 44 44 H 1.08994 * 109.47841 * 59.99862 * 16 15 13 45 45 H 1.08998 * 109.47203 * 299.99593 * 17 16 15 46 46 H 1.08997 * 109.47425 * 59.99729 * 17 16 15 47 47 H 0.97006 * 120.00048 * 179.97438 * 21 20 18 48 48 H 1.09736 * 108.81280 * 154.20320 * 26 12 11 49 49 H 1.08818 * 110.02000 * 35.51339 * 26 12 11 50 50 H 1.09649 * 108.46236 * 301.42092 * 27 26 12 51 51 H 1.09851 * 107.94269 * 186.67684 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5294 0.0000 0.0000 3 6 2.0027 1.4308 0.0000 4 6 3.3459 1.7145 0.1617 5 6 3.7806 3.0267 0.1574 6 6 2.8709 4.0557 0.0006 7 6 1.5270 3.7722 -0.1558 8 6 1.0928 2.4597 -0.1559 9 6 2.0969 -0.6964 -1.1870 10 6 1.2602 -1.8683 -1.7298 11 6 1.2505 -3.0657 -0.7514 12 7 2.0686 -2.9444 0.4194 13 6 3.2176 -3.6376 0.5352 14 8 3.6268 -4.2969 -0.4009 15 7 3.9137 -3.6004 1.6886 16 6 5.2172 -4.2630 1.7792 17 6 5.7900 -4.0715 3.1850 18 6 7.1306 -4.7537 3.2784 19 1 7.5334 -5.2723 2.4210 20 6 7.8426 -4.7157 4.4584 21 7 7.3518 -4.0846 5.5026 22 14 9.5040 -5.5618 4.5744 23 1 10.5738 -4.6072 4.1874 24 1 9.7300 -6.0198 5.9687 25 1 9.5290 -6.7310 3.6591 26 6 1.6034 -2.0366 1.5237 27 6 2.0715 -0.6909 1.2401 28 1 -0.3634 -1.0277 0.0073 29 1 -0.3633 0.5201 0.8864 30 1 -0.3634 0.5076 -0.8935 31 1 4.0562 0.9107 0.2876 32 1 4.8306 3.2482 0.2793 33 1 3.2101 5.0810 -0.0002 34 1 0.8162 4.5760 -0.2788 35 1 0.0429 2.2383 -0.2781 36 1 2.2247 0.0410 -1.9952 37 1 3.1029 -1.0605 -0.9414 38 1 0.2465 -1.5677 -1.9715 39 1 1.7216 -2.2106 -2.6729 40 1 1.5718 -3.9543 -1.2972 41 1 0.2213 -3.2321 -0.4282 42 1 3.5517 -3.1349 2.4588 43 1 5.0983 -5.3277 1.5776 44 1 5.8975 -3.8283 1.0470 45 1 5.9088 -3.0070 3.3870 46 1 5.1096 -4.5066 3.9169 47 1 7.8527 -4.0582 6.3329 48 1 2.0348 -2.3825 2.4716 49 1 0.5188 -2.0742 1.6048 50 1 3.1654 -0.7119 1.1674 51 1 1.8327 -0.0598 2.1069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286810329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:54 Heat of formation + Delta-G solvation = -27.363318 kcal Electronic energy + Delta-G solvation = -29038.158360 eV Core-core repulsion = 25322.233120 eV Total energy + Delta-G solvation = -3715.925240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94224 -40.66043 -38.66492 -36.70830 -35.74342 -34.91676 -33.64268 -32.00785 -31.52182 -31.09737 -28.93812 -27.94212 -26.57088 -25.60363 -23.60912 -23.19582 -22.87158 -22.40708 -20.55027 -19.60898 -18.95139 -18.51627 -18.00729 -17.27738 -16.84130 -16.52540 -16.24858 -15.94122 -15.87937 -15.64047 -15.37716 -15.13825 -14.96360 -14.56955 -14.33786 -14.28980 -14.16095 -13.76603 -13.48976 -13.34516 -13.19635 -12.95112 -12.73585 -12.61283 -12.52317 -12.44515 -12.24490 -12.21932 -12.02748 -11.68793 -11.66234 -11.48756 -11.44565 -11.27383 -11.14371 -11.02738 -10.61350 -10.16938 -9.78677 -9.60319 -9.42468 -8.24888 -6.35226 0.48631 0.53063 1.40741 1.41390 1.52805 1.70379 2.17257 2.39896 2.90083 2.96412 3.09769 3.52396 3.64156 3.87340 4.03015 4.04838 4.16978 4.19345 4.22881 4.31191 4.38544 4.43970 4.47928 4.49670 4.59842 4.62204 4.68327 4.75359 4.79378 4.83739 4.87365 4.95849 4.98924 5.07285 5.16639 5.18071 5.22059 5.22870 5.29158 5.31961 5.37834 5.49639 5.50470 5.57232 5.65833 5.66788 5.69907 5.80000 5.83338 6.03014 6.16305 6.16599 6.77325 6.98877 7.33991 7.61090 8.87044 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.002946 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.193747 B = 9502.138912 C =11045.317740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.004 3.996 3 C -0.077 4.077 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.134 4.134 7 C -0.124 4.124 8 C -0.122 4.122 9 C -0.090 4.090 10 C -0.118 4.118 11 C 0.122 3.878 12 N -0.616 5.616 13 C 0.700 3.300 14 O -0.641 6.641 15 N -0.735 5.735 16 C 0.161 3.839 17 C 0.027 3.973 18 C -0.547 4.547 19 H 0.057 0.943 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.267 1.267 26 C 0.119 3.881 27 C -0.128 4.128 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.048 0.952 37 H 0.025 0.975 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.403 0.597 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.007 0.993 46 H 0.008 0.992 47 H 0.266 0.734 48 H 0.078 0.922 49 H 0.119 0.881 50 H 0.038 0.962 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.433 16.085 -10.728 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.004 3.996 3 C -0.077 4.077 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.142 4.142 8 C -0.139 4.139 9 C -0.128 4.128 10 C -0.157 4.157 11 C -0.002 4.002 12 N -0.352 5.352 13 C 0.402 3.598 14 O -0.524 6.524 15 N -0.391 5.391 16 C 0.037 3.963 17 C -0.010 4.010 18 C -0.585 4.585 19 H 0.076 0.924 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.191 1.191 26 C -0.001 4.001 27 C -0.166 4.166 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.240 0.760 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.025 0.975 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.137 0.863 50 H 0.056 0.944 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.062 15.648 -11.216 27.806 hybrid contribution 1.634 -0.276 0.580 1.756 sum -18.428 15.372 -10.636 26.249 Atomic orbital electron populations 1.21962 0.91363 1.03312 1.02994 1.18265 0.97521 0.89749 0.94067 1.20028 0.93046 0.95489 0.99159 1.21132 0.96173 0.96697 1.01412 1.21345 1.00398 0.93018 1.00475 1.21423 0.93852 0.99614 1.00283 1.21509 0.95999 0.97325 0.99329 1.21483 1.00654 0.91956 0.99821 1.21005 0.98152 0.96544 0.97093 1.22396 1.01848 0.94030 0.97438 1.20974 0.94679 0.98257 0.86329 1.47206 1.21680 1.46554 1.19800 1.16067 0.80844 0.80165 0.82741 1.90840 1.71366 1.49332 1.40835 1.45341 1.21421 1.59246 1.13095 1.21044 0.81569 0.95303 0.98399 1.19094 0.95147 0.96259 0.90538 1.21445 1.04320 1.34711 0.98062 0.92445 1.25852 1.02058 0.95926 0.95195 1.70053 1.39999 1.43595 1.02818 0.85455 0.79141 0.78941 0.77578 1.19765 1.20341 1.19143 1.21039 1.02575 0.87822 0.88660 1.20611 1.00313 0.96554 0.99152 0.90843 0.91071 0.90998 0.88080 0.85935 0.84543 0.83730 0.83196 0.93308 0.95618 0.87771 0.93393 0.92764 0.88954 0.75987 0.93999 0.94292 0.97499 0.97324 0.92508 0.90422 0.86291 0.94365 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 5.90 71.96 0.42 -0.99 16 2 C 0.00 0.07 0.57 -54.60 -0.03 0.04 16 3 C -0.08 -1.46 4.38 -19.87 -0.09 -1.54 16 4 C -0.14 -3.10 8.86 22.27 0.20 -2.91 16 5 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 6 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 7 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 8 C -0.12 -1.83 8.93 22.27 0.20 -1.63 16 9 C -0.09 -1.89 4.02 29.58 0.12 -1.77 16 10 C -0.12 -2.14 5.29 31.45 0.17 -1.97 16 11 C 0.12 2.64 5.39 87.52 0.47 3.11 16 12 N -0.62 -15.98 2.05 -846.51 -1.74 -17.72 16 13 C 0.70 25.89 8.29 179.08 1.49 27.38 16 14 O -0.64 -29.34 15.78 -4.00 -0.06 -29.40 16 15 N -0.73 -27.66 5.46 -478.60 -2.61 -30.27 16 16 C 0.16 7.37 5.62 86.38 0.49 7.86 16 17 C 0.03 1.41 5.09 29.85 0.15 1.56 16 18 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 19 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 20 C 0.01 0.49 5.46 84.66 0.46 0.95 16 21 N -0.93 -54.66 13.29 21.44 0.28 -54.38 16 22 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.12 2.20 5.35 83.28 0.45 2.64 16 27 C -0.13 -2.46 3.36 27.90 0.09 -2.37 16 28 H 0.07 0.62 5.52 -2.39 -0.01 0.61 16 29 H 0.07 0.60 7.77 -2.38 -0.02 0.58 16 30 H 0.07 0.60 7.10 -2.39 -0.02 0.58 16 31 H 0.10 2.63 7.04 -2.91 -0.02 2.61 16 32 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.15 1.49 5.81 -2.91 -0.02 1.47 16 36 H 0.05 1.04 7.78 -1.77 -0.01 1.03 16 37 H 0.02 0.73 7.20 -1.97 -0.01 0.72 16 38 H 0.10 1.21 7.12 -2.67 -0.02 1.19 16 39 H 0.05 0.99 8.26 -1.62 -0.01 0.97 16 40 H 0.05 1.50 7.02 -2.32 -0.02 1.48 16 41 H 0.09 1.36 7.91 -2.31 -0.02 1.34 16 42 H 0.40 13.18 6.10 -92.71 -0.57 12.61 16 43 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 48 H 0.08 1.49 6.06 -1.99 -0.01 1.47 16 49 H 0.12 1.39 7.02 -2.48 -0.02 1.37 16 50 H 0.04 0.98 6.58 -2.04 -0.01 0.97 16 51 H 0.08 1.39 8.09 -1.93 -0.02 1.38 16 Total: -1.00 -72.89 388.35 3.76 -69.12 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.37 Total: 23.22 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.49 Total: -6.82 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -4.06 Total: -102.37 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.06 Total: -29.40 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.89 3.76 -69.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286810329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.761 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds