Wall clock time and date at job start Tue Mar 31 2020 16:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53120 * 109.57370 * 2 1 4 4 C 1.53040 * 109.27503 * 177.59141 * 3 2 1 5 5 N 1.46850 * 109.52419 * 300.82105 * 4 3 2 6 6 C 1.39671 * 111.00092 * 185.84334 * 5 4 3 7 7 C 1.38915 * 120.07253 * 235.51162 * 6 5 4 8 8 C 1.38105 * 119.92214 * 179.76702 * 7 6 5 9 9 C 1.38280 * 120.07569 * 0.50907 * 8 7 6 10 10 C 1.50704 * 119.92565 * 179.72248 * 9 8 7 11 11 N 1.46498 * 109.46911 * 270.02124 * 10 9 8 12 12 C 1.34777 * 119.99689 * 180.02562 * 11 10 9 13 13 O 1.21286 * 120.00187 * 359.97438 * 12 11 10 14 14 C 1.50708 * 119.99875 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.46913 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47297 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99657 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00731 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99709 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00344 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46991 * 90.00559 * 20 18 16 22 22 H 1.48499 * 109.46953 * 210.00400 * 20 18 16 23 23 H 1.48500 * 109.47021 * 330.00198 * 20 18 16 24 24 C 1.38291 * 120.15154 * 359.74019 * 9 8 7 25 25 C 1.38100 * 120.07374 * 0.02562 * 24 9 8 26 26 C 1.46841 * 111.19924 * 61.73999 * 5 4 3 27 27 C 1.53042 * 109.52629 * 298.26169 * 26 5 4 28 28 H 1.09001 * 109.46902 * 300.16140 * 1 2 3 29 29 H 1.09001 * 109.46838 * 60.15699 * 1 2 3 30 30 H 1.09000 * 109.47234 * 180.16331 * 1 2 3 31 31 H 1.09002 * 109.52314 * 239.83913 * 2 1 3 32 32 H 1.09002 * 109.50326 * 297.52512 * 3 2 1 33 33 H 1.08999 * 109.50267 * 57.65168 * 3 2 1 34 34 H 1.09002 * 109.46407 * 180.80522 * 4 3 2 35 35 H 1.08998 * 109.45709 * 60.83037 * 4 3 2 36 36 H 1.07990 * 120.03567 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.95984 * 180.25083 * 8 7 6 38 38 H 1.08996 * 109.47200 * 30.02292 * 10 9 8 39 39 H 1.08999 * 109.47159 * 150.01951 * 10 9 8 40 40 H 0.97000 * 120.00302 * 359.97438 * 11 10 9 41 41 H 1.09002 * 109.46705 * 299.99141 * 14 12 11 42 42 H 1.08998 * 109.47042 * 59.99841 * 14 12 11 43 43 H 1.09009 * 109.47372 * 299.99715 * 15 14 12 44 44 H 1.09006 * 109.47634 * 59.99737 * 15 14 12 45 45 H 0.97003 * 120.00244 * 179.97438 * 19 18 16 46 46 H 1.07998 * 119.96525 * 179.97438 * 24 9 8 47 47 H 1.07999 * 120.04185 * 179.97438 * 25 24 9 48 48 H 1.08998 * 109.46320 * 178.24106 * 26 5 4 49 49 H 1.08998 * 109.45620 * 58.27242 * 26 5 4 50 50 H 1.09003 * 109.49792 * 299.23877 * 27 26 5 51 51 H 1.08997 * 109.53473 * 179.13824 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5722 1.4352 0.0607 5 7 4.0116 0.7404 1.2776 6 6 5.3969 0.8294 1.4322 7 6 6.1579 -0.3250 1.5662 8 6 7.5280 -0.2337 1.7141 9 6 8.1412 1.0055 1.7394 10 6 9.6358 1.1015 1.9072 11 7 9.9629 1.1819 3.3329 12 6 11.2490 1.2756 3.7249 13 8 12.1355 1.2929 2.8974 14 6 11.5855 1.3578 5.1916 15 6 13.1028 1.4554 5.3619 16 6 13.4395 1.5382 6.8285 17 1 12.6501 1.5223 7.5654 18 6 14.7551 1.6331 7.2297 19 7 15.7165 1.6519 6.3323 20 14 15.1723 1.7350 9.0476 21 1 15.3657 0.3657 9.5886 22 1 16.4212 2.5184 9.2257 23 1 14.0618 2.4019 9.7737 24 6 7.3860 2.1569 1.6113 25 6 6.0161 2.0726 1.4583 26 6 3.5709 -0.6603 1.2778 27 6 2.0417 -0.7153 1.2534 28 1 -0.3633 0.5163 0.8885 29 1 -0.3633 0.5114 -0.8914 30 1 -0.3634 -1.0277 0.0029 31 1 1.8943 -0.5162 -0.8883 32 1 1.7176 1.9447 -0.9112 33 1 1.6470 1.9698 0.8680 34 1 3.9402 2.4611 0.0753 35 1 3.9678 0.9199 -0.8145 36 1 5.6791 -1.2929 1.5515 37 1 8.1207 -1.1309 1.8143 38 1 10.1073 0.2187 1.4754 39 1 10.0018 1.9939 1.3995 40 1 9.2538 1.1685 3.9947 41 1 11.1136 2.2402 5.6238 42 1 11.2200 0.4649 5.6988 43 1 13.5745 0.5727 4.9298 44 1 13.4689 2.3480 4.8546 45 1 16.6421 1.7190 6.6145 46 1 7.8680 3.1232 1.6319 47 1 5.4268 2.9722 1.3588 48 1 3.9379 -1.1563 2.1763 49 1 3.9666 -1.1655 0.3968 50 1 1.6456 -0.2222 2.1411 51 1 1.7146 -1.7550 1.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291646941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:37 Heat of formation + Delta-G solvation = -31.430818 kcal Electronic energy + Delta-G solvation = -26850.720804 eV Core-core repulsion = 23134.619185 eV Total energy + Delta-G solvation = -3716.101620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81795 -39.25949 -38.39750 -35.64338 -33.98791 -33.39796 -32.02730 -31.20887 -30.75655 -30.40284 -28.25214 -26.09957 -24.72078 -24.44495 -23.02030 -22.06581 -21.53896 -20.92641 -20.09508 -19.58604 -17.87116 -16.90293 -16.12051 -16.01801 -15.56331 -15.33333 -15.29382 -15.06974 -14.76497 -14.50846 -14.43580 -14.37642 -14.12905 -13.81590 -13.42540 -12.99867 -12.94854 -12.86027 -12.82816 -12.39838 -12.23725 -12.12477 -11.86189 -11.76616 -11.45461 -11.29463 -11.24138 -11.11489 -10.89997 -10.86620 -10.71202 -10.57035 -10.01525 -9.91182 -9.62307 -9.17581 -9.14105 -8.98585 -8.71855 -8.28575 -8.06929 -5.92874 -3.97085 1.03294 1.18250 3.18084 3.31982 3.35688 3.41408 3.43984 3.47002 3.93459 4.18505 4.22737 4.27312 4.50770 4.55812 4.64682 4.68545 4.70732 4.79183 4.87348 4.98119 5.05760 5.11255 5.16264 5.19525 5.21093 5.30411 5.36901 5.40245 5.42000 5.48090 5.54686 5.57124 5.63231 5.64205 5.68674 5.84232 5.90637 5.93236 5.99222 6.07515 6.28198 6.30449 6.47073 6.48550 6.65338 6.77434 6.94776 6.98508 7.78128 7.90699 7.96622 8.11061 8.42666 8.84253 9.11739 9.66263 11.18078 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029800 B = 0.001610 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.368904 B =17384.090200 C =17771.117683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.114 4.114 4 C 0.058 3.942 5 N -0.488 5.488 6 C 0.115 3.885 7 C -0.174 4.174 8 C -0.073 4.073 9 C -0.127 4.127 10 C 0.162 3.838 11 N -0.740 5.740 12 C 0.509 3.491 13 O -0.536 6.536 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.075 4.075 25 C -0.143 4.143 26 C 0.050 3.950 27 C -0.114 4.114 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.084 0.916 49 H 0.045 0.955 50 H 0.073 0.927 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.345 -3.389 -15.169 36.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.152 4.152 4 C -0.067 4.067 5 N -0.203 5.203 6 C 0.017 3.983 7 C -0.195 4.195 8 C -0.093 4.093 9 C -0.128 4.128 10 C 0.039 3.961 11 N -0.394 5.394 12 C 0.297 3.703 13 O -0.412 6.412 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.094 4.094 25 C -0.163 4.163 26 C -0.077 4.077 27 C -0.151 4.151 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.102 0.898 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -32.784 -3.128 -15.431 36.369 hybrid contribution 0.228 -0.344 0.744 0.851 sum -32.556 -3.473 -14.687 35.884 Atomic orbital electron populations 1.21806 0.94822 1.01797 1.01922 1.21215 0.95918 0.96113 0.98250 1.21703 0.94053 0.96771 1.02646 1.22242 0.96087 0.99259 0.89155 1.59007 1.09320 1.15353 1.36645 1.18965 0.87444 0.93851 0.98060 1.21269 0.94084 0.97602 1.06501 1.20975 0.94081 0.97299 0.96906 1.19892 0.95396 0.93377 1.04144 1.20050 0.89852 1.02578 0.83620 1.46298 1.08550 1.77538 1.07048 1.21584 0.81218 0.74455 0.92997 1.90668 1.46841 1.48572 1.55088 1.21864 1.03559 1.02437 0.89111 1.18902 0.86276 0.98559 0.96360 1.21237 0.92154 1.50956 0.92160 0.92611 1.25023 0.96547 0.95358 0.97449 1.70003 0.99699 1.50129 1.33032 0.86592 0.77855 0.77996 0.85508 1.20698 1.21235 1.19903 1.20990 0.93182 0.98247 0.97001 1.20750 0.94537 0.96091 1.04924 1.22285 0.96111 0.87578 1.01708 1.21694 0.94072 1.00747 0.98621 0.92493 0.92659 0.92639 0.91409 0.91096 0.90795 0.89911 0.93916 0.85589 0.85741 0.91201 0.91162 0.76841 0.90264 0.90284 0.95829 0.95812 0.92988 0.85562 0.85753 0.89805 0.93685 0.90830 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.21 37.16 0.34 -0.26 16 2 C -0.10 -0.47 2.79 -90.49 -0.25 -0.72 16 3 C -0.11 -0.59 5.38 -26.65 -0.14 -0.73 16 4 C 0.06 0.37 5.26 -3.83 -0.02 0.35 16 5 N -0.49 -3.82 4.70 -171.15 -0.80 -4.62 16 6 C 0.11 1.05 5.64 -83.78 -0.47 0.58 16 7 C -0.17 -1.58 8.82 -39.38 -0.35 -1.93 16 8 C -0.07 -0.73 9.69 -39.61 -0.38 -1.11 16 9 C -0.13 -1.36 5.25 -104.58 -0.55 -1.91 16 10 C 0.16 2.12 5.79 -5.19 -0.03 2.09 16 11 N -0.74 -10.83 5.55 -61.47 -0.34 -11.17 16 12 C 0.51 10.04 7.83 -10.98 -0.09 9.95 16 13 O -0.54 -12.92 15.98 5.55 0.09 -12.83 16 14 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 15 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 16 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 C -0.08 -0.74 9.69 -39.61 -0.38 -1.12 16 25 C -0.14 -1.31 9.16 -39.38 -0.36 -1.67 16 26 C 0.05 0.32 4.15 -3.83 -0.02 0.31 16 27 C -0.11 -0.60 5.38 -26.65 -0.14 -0.74 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.51 6.71 -51.93 -0.35 0.17 16 35 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.13 0.95 5.81 -52.49 -0.30 0.64 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.40 4.87 8.46 -40.82 -0.35 4.52 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 44 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.12 0.98 7.15 -52.49 -0.38 0.60 16 48 H 0.08 0.55 6.96 -51.93 -0.36 0.19 16 49 H 0.04 0.29 7.75 -51.93 -0.40 -0.12 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -34.27 405.82 -11.62 -45.89 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.86 Total: -0.49 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.53 Total: -12.77 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.41 Total: -42.80 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.27 -11.62 -45.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291646941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.456 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds