Wall clock time and date at job start Tue Mar 31 2020 16:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53120 * 109.57370 * 2 1 4 4 C 1.53040 * 109.27503 * 177.59141 * 3 2 1 5 5 N 1.46850 * 109.52419 * 300.82105 * 4 3 2 6 6 C 1.39671 * 111.00092 * 185.84334 * 5 4 3 7 7 C 1.38915 * 120.07253 * 235.51162 * 6 5 4 8 8 C 1.38105 * 119.92214 * 179.76702 * 7 6 5 9 9 C 1.38280 * 120.07569 * 0.50907 * 8 7 6 10 10 C 1.50704 * 119.92565 * 179.72248 * 9 8 7 11 11 N 1.46498 * 109.46911 * 270.02124 * 10 9 8 12 12 C 1.34777 * 119.99689 * 180.02562 * 11 10 9 13 13 O 1.21286 * 120.00187 * 359.97438 * 12 11 10 14 14 C 1.50708 * 119.99875 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.46913 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47297 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99657 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00731 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99709 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00344 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46991 * 90.00559 * 20 18 16 22 22 H 1.48499 * 109.46953 * 210.00400 * 20 18 16 23 23 H 1.48500 * 109.47021 * 330.00198 * 20 18 16 24 24 C 1.38291 * 120.15154 * 359.74019 * 9 8 7 25 25 C 1.38100 * 120.07374 * 0.02562 * 24 9 8 26 26 C 1.46841 * 111.19924 * 61.73999 * 5 4 3 27 27 C 1.53042 * 109.52629 * 298.26169 * 26 5 4 28 28 H 1.09001 * 109.46902 * 300.16140 * 1 2 3 29 29 H 1.09001 * 109.46838 * 60.15699 * 1 2 3 30 30 H 1.09000 * 109.47234 * 180.16331 * 1 2 3 31 31 H 1.09002 * 109.52314 * 239.83913 * 2 1 3 32 32 H 1.09002 * 109.50326 * 297.52512 * 3 2 1 33 33 H 1.08999 * 109.50267 * 57.65168 * 3 2 1 34 34 H 1.09002 * 109.46407 * 180.80522 * 4 3 2 35 35 H 1.08998 * 109.45709 * 60.83037 * 4 3 2 36 36 H 1.07990 * 120.03567 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.95984 * 180.25083 * 8 7 6 38 38 H 1.08996 * 109.47200 * 30.02292 * 10 9 8 39 39 H 1.08999 * 109.47159 * 150.01951 * 10 9 8 40 40 H 0.97000 * 120.00302 * 359.97438 * 11 10 9 41 41 H 1.09002 * 109.46705 * 299.99141 * 14 12 11 42 42 H 1.08998 * 109.47042 * 59.99841 * 14 12 11 43 43 H 1.09009 * 109.47372 * 299.99715 * 15 14 12 44 44 H 1.09006 * 109.47634 * 59.99737 * 15 14 12 45 45 H 0.97003 * 120.00244 * 179.97438 * 19 18 16 46 46 H 1.07998 * 119.96525 * 179.97438 * 24 9 8 47 47 H 1.07999 * 120.04185 * 179.97438 * 25 24 9 48 48 H 1.08998 * 109.46320 * 178.24106 * 26 5 4 49 49 H 1.08998 * 109.45620 * 58.27242 * 26 5 4 50 50 H 1.09003 * 109.49792 * 299.23877 * 27 26 5 51 51 H 1.08997 * 109.53473 * 179.13824 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5722 1.4352 0.0607 5 7 4.0116 0.7404 1.2776 6 6 5.3969 0.8294 1.4322 7 6 6.1579 -0.3250 1.5662 8 6 7.5280 -0.2337 1.7141 9 6 8.1412 1.0055 1.7394 10 6 9.6358 1.1015 1.9072 11 7 9.9629 1.1819 3.3329 12 6 11.2490 1.2756 3.7249 13 8 12.1355 1.2929 2.8974 14 6 11.5855 1.3578 5.1916 15 6 13.1028 1.4554 5.3619 16 6 13.4395 1.5382 6.8285 17 1 12.6501 1.5223 7.5654 18 6 14.7551 1.6331 7.2297 19 7 15.7165 1.6519 6.3323 20 14 15.1723 1.7350 9.0476 21 1 15.3657 0.3657 9.5886 22 1 16.4212 2.5184 9.2257 23 1 14.0618 2.4019 9.7737 24 6 7.3860 2.1569 1.6113 25 6 6.0161 2.0726 1.4583 26 6 3.5709 -0.6603 1.2778 27 6 2.0417 -0.7153 1.2534 28 1 -0.3633 0.5163 0.8885 29 1 -0.3633 0.5114 -0.8914 30 1 -0.3634 -1.0277 0.0029 31 1 1.8943 -0.5162 -0.8883 32 1 1.7176 1.9447 -0.9112 33 1 1.6470 1.9698 0.8680 34 1 3.9402 2.4611 0.0753 35 1 3.9678 0.9199 -0.8145 36 1 5.6791 -1.2929 1.5515 37 1 8.1207 -1.1309 1.8143 38 1 10.1073 0.2187 1.4754 39 1 10.0018 1.9939 1.3995 40 1 9.2538 1.1685 3.9947 41 1 11.1136 2.2402 5.6238 42 1 11.2200 0.4649 5.6988 43 1 13.5745 0.5727 4.9298 44 1 13.4689 2.3480 4.8546 45 1 16.6421 1.7190 6.6145 46 1 7.8680 3.1232 1.6319 47 1 5.4268 2.9722 1.3588 48 1 3.9379 -1.1563 2.1763 49 1 3.9666 -1.1655 0.3968 50 1 1.6456 -0.2222 2.1411 51 1 1.7146 -1.7550 1.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291646941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:36 Heat of formation + Delta-G solvation = -52.128968 kcal Electronic energy + Delta-G solvation = -26851.618344 eV Core-core repulsion = 23134.619185 eV Total energy + Delta-G solvation = -3716.999159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.46894 -40.64729 -39.21086 -36.46804 -35.55155 -35.01814 -33.05097 -32.60579 -31.48795 -31.30923 -29.00985 -27.71162 -25.95759 -25.00634 -23.77522 -23.23397 -22.69425 -21.68302 -21.17650 -20.55588 -18.86322 -18.48352 -17.53239 -17.07025 -16.91928 -16.40842 -16.38282 -16.04953 -15.86339 -15.45132 -15.20501 -15.02388 -14.83834 -14.64565 -14.52461 -14.32133 -14.18721 -13.92836 -13.50347 -13.41989 -13.32104 -13.21637 -12.83768 -12.79930 -12.63558 -12.47708 -12.32961 -12.16855 -11.96280 -11.90494 -11.66736 -11.62568 -11.29720 -11.27924 -11.15966 -10.90224 -10.55922 -10.49975 -10.07628 -9.89415 -8.77294 -8.16893 -6.31009 0.25863 0.45228 1.42776 1.45638 1.56599 1.73083 2.26827 2.45025 2.68032 2.96534 3.15981 3.71773 3.73122 3.79953 3.86541 3.92635 4.03636 4.11001 4.15591 4.28955 4.36842 4.41117 4.45554 4.51774 4.53835 4.56954 4.60751 4.71046 4.72906 4.74715 4.79560 4.86521 4.87801 4.99431 5.05470 5.09914 5.12742 5.17214 5.23699 5.31243 5.35793 5.36905 5.44553 5.52396 5.52758 5.64722 5.67153 5.79208 5.86725 6.05662 6.19021 6.31471 6.62556 6.87385 7.35298 7.39396 8.95736 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029800 B = 0.001610 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.368904 B =17384.090200 C =17771.117683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.110 4.110 4 C 0.057 3.943 5 N -0.494 5.494 6 C 0.115 3.885 7 C -0.177 4.177 8 C -0.076 4.076 9 C -0.137 4.137 10 C 0.166 3.834 11 N -0.714 5.714 12 C 0.511 3.489 13 O -0.590 6.590 14 C -0.119 4.119 15 C 0.041 3.959 16 C -0.544 4.544 17 H 0.075 0.925 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.974 3.026 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.256 1.256 24 C -0.077 4.077 25 C -0.147 4.147 26 C 0.048 3.952 27 C -0.110 4.110 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.414 0.586 41 H 0.103 0.897 42 H 0.103 0.897 43 H -0.017 1.017 44 H -0.017 1.017 45 H 0.263 0.737 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.083 0.917 49 H 0.047 0.953 50 H 0.066 0.934 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.255 -3.618 -14.027 39.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.148 4.148 4 C -0.068 4.068 5 N -0.209 5.209 6 C 0.016 3.984 7 C -0.198 4.198 8 C -0.095 4.095 9 C -0.138 4.138 10 C 0.043 3.957 11 N -0.367 5.367 12 C 0.300 3.700 13 O -0.470 6.470 14 C -0.159 4.159 15 C 0.004 3.996 16 C -0.582 4.582 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.180 1.180 24 C -0.096 4.096 25 C -0.167 4.167 26 C -0.079 4.079 27 C -0.148 4.148 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.001 0.999 44 H 0.001 0.999 45 H 0.071 0.929 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.101 0.899 49 H 0.066 0.934 50 H 0.085 0.915 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -35.787 -3.363 -14.283 38.678 hybrid contribution 1.020 -0.284 0.307 1.102 sum -34.767 -3.647 -13.976 37.648 Atomic orbital electron populations 1.21779 0.94191 1.02096 1.02028 1.21211 0.96411 0.95784 0.97987 1.21685 0.93029 0.97105 1.02956 1.22297 0.96956 0.99141 0.88425 1.59035 1.08436 1.16258 1.37198 1.19169 0.88191 0.93875 0.97143 1.21438 0.93743 0.98407 1.06227 1.21070 0.94603 0.97148 0.96681 1.19643 0.93690 0.94221 1.06244 1.20063 0.91723 1.01936 0.82020 1.46029 1.07092 1.75087 1.08521 1.21340 0.82282 0.74249 0.92143 1.90655 1.48763 1.51463 1.56079 1.21639 0.98949 1.04723 0.90602 1.18697 0.90703 0.94743 0.95487 1.21726 0.92997 1.50499 0.92978 0.90647 1.26135 0.96453 0.94656 1.03146 1.70183 1.00249 1.51317 1.35988 0.85313 0.77881 0.78410 0.78584 1.19699 1.21138 1.17968 1.21076 0.93547 0.98213 0.96745 1.20896 0.94331 0.96748 1.04768 1.22348 0.96936 0.86843 1.01751 1.21676 0.93136 1.01444 0.98520 0.92704 0.92243 0.92266 0.91382 0.89982 0.91332 0.89747 0.94138 0.84108 0.85229 0.91911 0.91845 0.74964 0.87842 0.87839 0.99886 0.99871 0.92874 0.85006 0.84518 0.89905 0.93437 0.91535 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.21 71.98 0.66 -0.26 16 2 C -0.10 -0.75 2.79 -10.71 -0.03 -0.78 16 3 C -0.11 -0.94 5.38 30.65 0.16 -0.77 16 4 C 0.06 0.64 5.26 86.33 0.45 1.09 16 5 N -0.49 -6.88 4.70 -695.39 -3.27 -10.15 16 6 C 0.11 1.90 5.64 38.22 0.22 2.12 16 7 C -0.18 -2.92 8.82 22.40 0.20 -2.73 16 8 C -0.08 -1.40 9.69 22.25 0.22 -1.19 16 9 C -0.14 -2.78 5.25 -19.84 -0.10 -2.89 16 10 C 0.17 4.28 5.79 85.63 0.50 4.77 16 11 N -0.71 -20.30 5.55 -466.78 -2.59 -22.89 16 12 C 0.51 20.35 7.83 87.66 0.69 21.03 16 13 O -0.59 -29.63 15.98 -3.05 -0.05 -29.68 16 14 C -0.12 -4.92 5.64 29.85 0.17 -4.75 16 15 C 0.04 2.35 4.26 29.85 0.13 2.48 16 16 C -0.54 -31.47 9.11 25.60 0.23 -31.23 16 17 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 18 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 19 N -0.94 -60.14 13.29 21.45 0.28 -59.85 16 20 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 C -0.08 -1.41 9.69 22.25 0.22 -1.20 16 25 C -0.15 -2.46 9.16 22.40 0.21 -2.26 16 26 C 0.05 0.53 4.15 86.33 0.36 0.89 16 27 C -0.11 -0.96 5.38 30.65 0.16 -0.80 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.91 6.71 -2.39 -0.02 0.89 16 35 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.14 1.84 5.81 -2.92 -0.02 1.83 16 37 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 38 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 39 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 40 H 0.41 9.29 8.46 -92.71 -0.78 8.51 16 41 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.10 3.75 8.14 -2.39 -0.02 3.74 16 43 H -0.02 -1.11 8.10 -2.38 -0.02 -1.13 16 44 H -0.02 -1.10 8.10 -2.38 -0.02 -1.12 16 45 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 46 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 47 H 0.14 1.90 7.15 -2.91 -0.02 1.88 16 48 H 0.08 0.94 6.96 -2.39 -0.02 0.92 16 49 H 0.05 0.52 7.75 -2.39 -0.02 0.50 16 50 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -76.50 405.82 1.41 -75.08 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.12 Total: 17.05 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.89 Total: -16.38 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -5.57 Total: -92.90 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.05 Total: -29.68 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.50 1.41 -75.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291646941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.954 kcal (2) G-P(sol) polarization free energy of solvation -76.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds