Wall clock time and date at job start Tue Mar 31 2020 15:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38085 * 119.99619 * 2 1 4 4 C 1.38861 * 119.99401 * 180.02562 * 3 2 1 5 5 N 1.39898 * 120.00390 * 179.97438 * 4 3 2 6 6 C 1.48003 * 111.00042 * 191.90484 * 5 4 3 7 7 C 1.50452 * 112.82376 * 191.34919 * 6 5 4 8 8 C 1.54306 * 108.50038 * 93.73076 * 7 6 5 9 9 C 1.45882 * 112.18208 * 281.46018 * 8 7 6 10 10 C 1.54311 * 112.18688 * 61.12007 * 9 8 7 11 11 C 1.48000 * 110.99878 * 63.18728 * 5 4 3 12 12 C 1.38908 * 119.99258 * 359.97438 * 4 3 2 13 13 C 1.38035 * 119.99503 * 359.97438 * 12 4 3 14 14 C 1.38824 * 119.99830 * 179.97438 * 2 1 3 15 15 N 1.40155 * 119.99927 * 359.72205 * 14 2 1 16 16 C 1.34769 * 120.00123 * 145.92725 * 15 14 2 17 17 O 1.21289 * 120.00336 * 3.78314 * 16 15 14 18 18 C 1.50706 * 119.99918 * 183.78267 * 16 15 14 19 19 C 1.52996 * 109.46923 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.46923 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00184 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99363 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00143 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47260 * 89.99837 * 24 22 20 26 26 H 1.48503 * 109.46671 * 209.99911 * 24 22 20 27 27 H 1.48499 * 109.47149 * 329.99923 * 24 22 20 28 28 H 1.08995 * 109.46976 * 270.02333 * 1 2 3 29 29 H 1.09000 * 109.47032 * 30.02596 * 1 2 3 30 30 H 1.08999 * 109.46479 * 150.02465 * 1 2 3 31 31 H 1.07998 * 120.00179 * 359.97386 * 3 2 1 32 32 H 1.09000 * 108.80923 * 312.21128 * 6 5 4 33 33 H 1.08995 * 108.81375 * 70.48403 * 6 5 4 34 34 H 1.08998 * 109.63026 * 334.02171 * 7 6 5 35 35 H 1.08998 * 109.62632 * 213.43158 * 7 6 5 36 36 H 1.09002 * 108.94218 * 160.76551 * 8 7 6 37 37 H 1.08997 * 108.94276 * 42.15452 * 8 7 6 38 38 H 1.09006 * 108.93928 * 300.42400 * 9 8 7 39 39 H 1.08999 * 108.94067 * 181.82006 * 9 8 7 40 40 H 1.09000 * 109.63022 * 161.75779 * 10 9 8 41 41 H 1.09002 * 109.62641 * 41.16810 * 10 9 8 42 42 H 1.09006 * 108.81393 * 205.70289 * 11 5 4 43 43 H 1.09000 * 108.81287 * 323.97331 * 11 5 4 44 44 H 1.08007 * 120.00150 * 179.97438 * 12 4 3 45 45 H 1.08002 * 119.99921 * 180.02562 * 13 12 4 46 46 H 0.97005 * 119.99338 * 325.92802 * 15 14 2 47 47 H 1.08997 * 109.47372 * 300.00013 * 18 16 15 48 48 H 1.09000 * 109.46971 * 59.99935 * 18 16 15 49 49 H 1.08994 * 109.47513 * 299.99856 * 19 18 16 50 50 H 1.09000 * 109.47008 * 60.00376 * 19 18 16 51 51 H 0.97007 * 119.99821 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1959 0.0000 4 6 3.5860 1.1958 -0.0005 5 7 4.2857 2.4073 -0.0011 6 6 5.7216 2.1904 -0.2866 7 6 6.5586 3.4145 -0.0321 8 6 7.1183 3.3350 1.4037 9 6 6.1242 3.7087 2.4038 10 6 4.8953 2.7758 2.3810 11 6 4.0116 3.1786 1.2320 12 6 4.2804 -0.0072 -0.0005 13 6 3.5899 -1.2025 0.0005 14 6 2.2012 -1.2023 0.0005 15 7 1.5003 -2.4160 0.0070 16 6 1.9979 -3.4849 -0.6459 17 8 3.0841 -3.4170 -1.1812 18 6 1.2044 -4.7645 -0.7110 19 6 1.9890 -5.8112 -1.5045 20 6 1.1958 -7.0910 -1.5691 21 1 0.2287 -7.1516 -1.0922 22 6 1.7048 -8.1846 -2.2369 23 7 2.8827 -8.1110 -2.8172 24 14 0.7213 -9.7707 -2.3175 25 1 -0.1489 -9.7530 -3.5206 26 1 1.6511 -10.9261 -2.3960 27 1 -0.1199 -9.8940 -1.1000 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 1.6574 2.1312 -0.0004 32 1 6.0862 1.3783 0.3423 33 1 5.8323 1.9000 -1.3313 34 1 5.9424 4.3075 -0.1361 35 1 7.3824 3.4493 -0.7449 36 1 7.9738 4.0052 1.4876 37 1 7.4497 2.3150 1.5983 38 1 5.7963 4.7305 2.2122 39 1 6.5828 3.6656 3.3918 40 1 4.3453 2.8716 3.3172 41 1 5.2212 1.7441 2.2482 42 1 4.1647 4.2379 1.0254 43 1 2.9712 3.0254 1.5185 44 1 5.3604 -0.0075 -0.0014 45 1 4.1297 -2.1379 0.0010 46 1 0.6572 -2.4866 0.4814 47 1 1.0254 -5.1328 0.2991 48 1 0.2504 -4.5758 -1.2033 49 1 2.1676 -5.4427 -2.5146 50 1 2.9432 -6.0000 -1.0126 51 1 3.2407 -8.8802 -3.2874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291816980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:22 Heat of formation + Delta-G solvation = -18.028635 kcal Electronic energy + Delta-G solvation = -28063.880605 eV Core-core repulsion = 24348.360148 eV Total energy + Delta-G solvation = -3715.520457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78833 -39.75276 -38.02058 -35.47336 -33.52976 -33.49662 -32.79199 -32.17479 -31.07454 -29.16468 -27.25797 -26.54112 -25.44739 -25.05408 -22.78153 -21.70113 -21.30083 -20.80548 -19.64887 -19.55691 -17.47791 -17.06828 -16.82595 -16.29614 -15.78076 -15.54640 -15.25925 -14.72289 -14.47051 -14.37387 -14.11191 -13.96364 -13.69385 -13.48610 -13.35852 -13.26145 -12.98224 -12.64788 -12.46554 -12.22933 -12.12363 -12.02921 -11.95552 -11.56710 -11.29700 -11.20970 -11.17958 -11.03597 -10.94906 -10.91664 -10.62100 -10.57016 -10.04415 -10.00152 -9.68783 -9.21168 -9.07070 -8.98576 -8.63972 -8.34423 -7.41229 -5.98144 -4.02764 1.34528 1.48681 3.09034 3.32288 3.37623 3.40046 3.44631 3.49224 3.88190 4.29466 4.38319 4.45878 4.57603 4.71931 4.83713 4.86707 4.95541 5.00556 5.09440 5.16870 5.22335 5.28074 5.36344 5.36940 5.42646 5.47055 5.52220 5.57374 5.61393 5.65937 5.69413 5.77118 5.78127 5.86214 5.89038 5.93513 5.99066 6.09541 6.14920 6.15649 6.21737 6.34805 6.54973 6.65185 6.83904 6.95212 6.97499 7.35902 7.71251 7.74918 7.81984 8.03899 8.35033 8.64107 9.05308 9.60924 11.12766 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.002130 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.974133 B =13142.974129 C =13924.491521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.116 4.116 4 C 0.092 3.908 5 N -0.499 5.499 6 C 0.054 3.946 7 C -0.121 4.121 8 C -0.123 4.123 9 C -0.117 4.117 10 C -0.150 4.150 11 C 0.063 3.937 12 C -0.158 4.158 13 C -0.095 4.095 14 C 0.134 3.866 15 N -0.684 5.684 16 C 0.508 3.492 17 O -0.515 6.515 18 C -0.129 4.129 19 C 0.037 3.963 20 C -0.528 4.528 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.889 5.889 24 Si 0.894 3.106 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.141 0.859 46 H 0.406 0.594 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.024 0.976 50 H 0.024 0.976 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 26.903 11.429 29.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.137 4.137 4 C -0.005 4.005 5 N -0.216 5.216 6 C -0.072 4.072 7 C -0.159 4.159 8 C -0.161 4.161 9 C -0.155 4.155 10 C -0.188 4.188 11 C -0.062 4.062 12 C -0.179 4.179 13 C -0.116 4.116 14 C 0.039 3.961 15 N -0.330 5.330 16 C 0.298 3.702 17 O -0.389 6.389 18 C -0.169 4.169 19 C -0.001 4.001 20 C -0.566 4.566 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.144 0.856 45 H 0.159 0.841 46 H 0.242 0.758 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.043 0.957 50 H 0.042 0.958 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.536 27.098 10.551 29.190 hybrid contribution -0.555 -1.384 0.624 1.617 sum 1.981 25.713 11.175 28.106 Atomic orbital electron populations 1.20717 0.91014 1.03153 1.02098 1.19527 0.95879 0.91520 1.03179 1.20345 0.92044 0.96963 1.04311 1.18746 0.92715 0.88422 1.00622 1.59237 1.10282 1.17591 1.34465 1.22001 0.85739 0.97765 1.01733 1.21451 0.99204 0.98668 0.96570 1.20627 0.98527 1.02035 0.94882 1.20558 0.96206 0.99457 0.99246 1.21928 0.97200 1.00370 0.99347 1.22019 0.99610 0.98051 0.86534 1.21288 1.00102 0.91691 1.04845 1.21239 0.92741 0.99051 0.98564 1.17650 0.91335 0.85120 1.01991 1.43923 1.25655 1.09584 1.53831 1.21803 0.87106 0.85104 0.76181 1.90660 1.21118 1.82949 1.44124 1.21902 0.99916 0.91724 1.03337 1.18910 0.95046 0.90817 0.95290 1.21203 1.04046 0.96868 1.34508 0.92555 1.25031 0.95000 0.98904 0.95475 1.69999 1.17160 1.30618 1.34986 0.86577 0.79822 0.83083 0.78382 1.20655 1.21214 1.19882 0.91298 0.91286 0.91407 0.85816 0.93180 0.90474 0.90662 0.90798 0.92016 0.92117 0.91985 0.92256 0.91098 0.91365 0.90579 0.90807 0.85577 0.84115 0.75804 0.89923 0.89906 0.95740 0.95750 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.46 36.01 0.34 -0.72 16 2 C -0.10 -1.21 5.89 -104.46 -0.62 -1.82 16 3 C -0.12 -1.36 8.61 -39.41 -0.34 -1.70 16 4 C 0.09 1.12 5.30 -83.70 -0.44 0.68 16 5 N -0.50 -5.07 4.71 -172.26 -0.81 -5.88 16 6 C 0.05 0.50 4.09 -4.49 -0.02 0.48 16 7 C -0.12 -0.86 5.63 -27.32 -0.15 -1.02 16 8 C -0.12 -0.80 5.30 -29.42 -0.16 -0.96 16 9 C -0.12 -0.74 5.30 -29.41 -0.16 -0.90 16 10 C -0.15 -1.12 5.59 -27.32 -0.15 -1.28 16 11 C 0.06 0.51 5.06 -4.50 -0.02 0.49 16 12 C -0.16 -2.15 8.95 -39.41 -0.35 -2.50 16 13 C -0.10 -1.51 8.70 -39.42 -0.34 -1.86 16 14 C 0.13 2.00 6.29 -83.60 -0.53 1.47 16 15 N -0.68 -10.06 4.76 -9.82 -0.05 -10.11 16 16 C 0.51 9.71 7.67 -10.99 -0.08 9.62 16 17 O -0.51 -11.89 13.39 5.55 0.07 -11.81 16 18 C -0.13 -2.56 5.64 -27.88 -0.16 -2.71 16 19 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 20 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 24 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.07 0.65 7.16 -51.93 -0.37 0.28 16 31 H 0.12 1.22 7.75 -52.49 -0.41 0.82 16 32 H 0.05 0.48 4.36 -51.93 -0.23 0.25 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.55 7.08 -51.93 -0.37 0.18 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.43 7.52 -51.93 -0.39 0.04 16 38 H 0.06 0.36 7.52 -51.93 -0.39 -0.03 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.63 6.94 -51.93 -0.36 0.27 16 42 H 0.08 0.55 6.59 -51.93 -0.34 0.21 16 43 H 0.07 0.60 6.80 -51.93 -0.35 0.24 16 44 H 0.13 1.55 5.59 -52.48 -0.29 1.25 16 45 H 0.14 2.55 6.18 -52.49 -0.32 2.23 16 46 H 0.41 4.58 7.83 -40.82 -0.32 4.26 16 47 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 50 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 51 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -33.40 390.11 -11.23 -44.63 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.33 Total: 2.79 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -3.71 Total: -15.46 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.12 Total: -42.60 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.40 -11.23 -44.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291816980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.598 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds