Wall clock time and date at job start Tue Mar 31 2020 15:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38085 * 119.99619 * 2 1 4 4 C 1.38861 * 119.99401 * 180.02562 * 3 2 1 5 5 N 1.39898 * 120.00390 * 179.97438 * 4 3 2 6 6 C 1.48003 * 111.00042 * 191.90484 * 5 4 3 7 7 C 1.50452 * 112.82376 * 191.34919 * 6 5 4 8 8 C 1.54306 * 108.50038 * 93.73076 * 7 6 5 9 9 C 1.45882 * 112.18208 * 281.46018 * 8 7 6 10 10 C 1.54311 * 112.18688 * 61.12007 * 9 8 7 11 11 C 1.48000 * 110.99878 * 63.18728 * 5 4 3 12 12 C 1.38908 * 119.99258 * 359.97438 * 4 3 2 13 13 C 1.38035 * 119.99503 * 359.97438 * 12 4 3 14 14 C 1.38824 * 119.99830 * 179.97438 * 2 1 3 15 15 N 1.40155 * 119.99927 * 359.72205 * 14 2 1 16 16 C 1.34769 * 120.00123 * 145.92725 * 15 14 2 17 17 O 1.21289 * 120.00336 * 3.78314 * 16 15 14 18 18 C 1.50706 * 119.99918 * 183.78267 * 16 15 14 19 19 C 1.52996 * 109.46923 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.46923 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00184 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99363 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00143 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47260 * 89.99837 * 24 22 20 26 26 H 1.48503 * 109.46671 * 209.99911 * 24 22 20 27 27 H 1.48499 * 109.47149 * 329.99923 * 24 22 20 28 28 H 1.08995 * 109.46976 * 270.02333 * 1 2 3 29 29 H 1.09000 * 109.47032 * 30.02596 * 1 2 3 30 30 H 1.08999 * 109.46479 * 150.02465 * 1 2 3 31 31 H 1.07998 * 120.00179 * 359.97386 * 3 2 1 32 32 H 1.09000 * 108.80923 * 312.21128 * 6 5 4 33 33 H 1.08995 * 108.81375 * 70.48403 * 6 5 4 34 34 H 1.08998 * 109.63026 * 334.02171 * 7 6 5 35 35 H 1.08998 * 109.62632 * 213.43158 * 7 6 5 36 36 H 1.09002 * 108.94218 * 160.76551 * 8 7 6 37 37 H 1.08997 * 108.94276 * 42.15452 * 8 7 6 38 38 H 1.09006 * 108.93928 * 300.42400 * 9 8 7 39 39 H 1.08999 * 108.94067 * 181.82006 * 9 8 7 40 40 H 1.09000 * 109.63022 * 161.75779 * 10 9 8 41 41 H 1.09002 * 109.62641 * 41.16810 * 10 9 8 42 42 H 1.09006 * 108.81393 * 205.70289 * 11 5 4 43 43 H 1.09000 * 108.81287 * 323.97331 * 11 5 4 44 44 H 1.08007 * 120.00150 * 179.97438 * 12 4 3 45 45 H 1.08002 * 119.99921 * 180.02562 * 13 12 4 46 46 H 0.97005 * 119.99338 * 325.92802 * 15 14 2 47 47 H 1.08997 * 109.47372 * 300.00013 * 18 16 15 48 48 H 1.09000 * 109.46971 * 59.99935 * 18 16 15 49 49 H 1.08994 * 109.47513 * 299.99856 * 19 18 16 50 50 H 1.09000 * 109.47008 * 60.00376 * 19 18 16 51 51 H 0.97007 * 119.99821 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1959 0.0000 4 6 3.5860 1.1958 -0.0005 5 7 4.2857 2.4073 -0.0011 6 6 5.7216 2.1904 -0.2866 7 6 6.5586 3.4145 -0.0321 8 6 7.1183 3.3350 1.4037 9 6 6.1242 3.7087 2.4038 10 6 4.8953 2.7758 2.3810 11 6 4.0116 3.1786 1.2320 12 6 4.2804 -0.0072 -0.0005 13 6 3.5899 -1.2025 0.0005 14 6 2.2012 -1.2023 0.0005 15 7 1.5003 -2.4160 0.0070 16 6 1.9979 -3.4849 -0.6459 17 8 3.0841 -3.4170 -1.1812 18 6 1.2044 -4.7645 -0.7110 19 6 1.9890 -5.8112 -1.5045 20 6 1.1958 -7.0910 -1.5691 21 1 0.2287 -7.1516 -1.0922 22 6 1.7048 -8.1846 -2.2369 23 7 2.8827 -8.1110 -2.8172 24 14 0.7213 -9.7707 -2.3175 25 1 -0.1489 -9.7530 -3.5206 26 1 1.6511 -10.9261 -2.3960 27 1 -0.1199 -9.8940 -1.1000 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 1.6574 2.1312 -0.0004 32 1 6.0862 1.3783 0.3423 33 1 5.8323 1.9000 -1.3313 34 1 5.9424 4.3075 -0.1361 35 1 7.3824 3.4493 -0.7449 36 1 7.9738 4.0052 1.4876 37 1 7.4497 2.3150 1.5983 38 1 5.7963 4.7305 2.2122 39 1 6.5828 3.6656 3.3918 40 1 4.3453 2.8716 3.3172 41 1 5.2212 1.7441 2.2482 42 1 4.1647 4.2379 1.0254 43 1 2.9712 3.0254 1.5185 44 1 5.3604 -0.0075 -0.0014 45 1 4.1297 -2.1379 0.0010 46 1 0.6572 -2.4866 0.4814 47 1 1.0254 -5.1328 0.2991 48 1 0.2504 -4.5758 -1.2033 49 1 2.1676 -5.4427 -2.5146 50 1 2.9432 -6.0000 -1.0126 51 1 3.2407 -8.8802 -3.2874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291816980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:21 Heat of formation + Delta-G solvation = -37.844288 kcal Electronic energy + Delta-G solvation = -28064.739876 eV Core-core repulsion = 24348.360148 eV Total energy + Delta-G solvation = -3716.379728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83270 -40.87748 -39.09957 -36.45871 -35.59026 -34.62840 -33.62678 -33.03744 -32.91968 -30.21459 -28.24804 -27.79892 -26.74446 -25.88656 -24.21278 -23.05864 -22.32787 -21.47654 -21.07853 -20.41964 -18.89179 -18.51405 -17.81195 -17.60885 -16.97966 -16.75244 -16.47306 -16.17025 -15.86807 -15.32827 -15.10813 -14.89107 -14.60629 -14.56404 -14.35487 -14.21721 -14.10880 -14.04646 -13.73130 -13.34638 -13.26435 -12.95118 -12.87587 -12.81642 -12.79032 -12.48376 -12.41351 -12.13009 -11.99089 -11.94066 -11.65679 -11.59736 -11.47766 -11.32740 -11.24818 -11.10623 -10.69339 -10.57650 -9.99148 -9.64812 -8.44569 -8.19009 -6.33138 0.27975 0.41884 1.41807 1.44631 1.55496 1.63809 2.13734 2.43457 2.62006 2.87029 3.14192 3.71990 3.77269 3.82811 3.90091 3.96225 4.02560 4.14669 4.23148 4.28440 4.33755 4.41428 4.42288 4.49461 4.52288 4.57647 4.68569 4.71025 4.78686 4.82488 4.86148 4.93578 4.97923 5.03408 5.06345 5.16467 5.18413 5.23255 5.25643 5.30064 5.35199 5.39902 5.45210 5.47812 5.50232 5.56767 5.60704 5.83179 5.88366 6.13316 6.15771 6.38096 6.50289 6.85268 7.23903 7.37195 8.93674 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.002130 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.974133 B =13142.974129 C =13924.491521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.117 4.117 4 C 0.101 3.899 5 N -0.501 5.501 6 C 0.053 3.947 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.115 4.115 10 C -0.147 4.147 11 C 0.062 3.938 12 C -0.171 4.171 13 C -0.118 4.118 14 C 0.104 3.896 15 N -0.659 5.659 16 C 0.509 3.491 17 O -0.567 6.567 18 C -0.116 4.116 19 C 0.042 3.958 20 C -0.542 4.542 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.938 5.938 24 Si 0.975 3.025 25 H -0.272 1.272 26 H -0.287 1.287 27 H -0.254 1.254 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.425 0.575 47 H 0.110 0.890 48 H 0.110 0.890 49 H -0.018 1.018 50 H -0.017 1.017 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 29.050 12.926 31.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.137 4.137 4 C 0.003 3.997 5 N -0.218 5.218 6 C -0.073 4.073 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.152 4.152 10 C -0.186 4.186 11 C -0.062 4.062 12 C -0.192 4.192 13 C -0.139 4.139 14 C 0.010 3.990 15 N -0.306 5.306 16 C 0.299 3.701 17 O -0.445 6.445 18 C -0.156 4.156 19 C 0.005 3.995 20 C -0.580 4.580 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.799 3.201 25 H -0.197 1.197 26 H -0.213 1.213 27 H -0.178 1.178 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.146 0.854 45 H 0.124 0.876 46 H 0.265 0.735 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.000 1.000 50 H 0.001 0.999 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.292 29.299 12.097 31.699 hybrid contribution 0.384 -1.899 0.171 1.946 sum 0.092 27.399 12.268 30.021 Atomic orbital electron populations 1.20823 0.88323 1.03918 1.03867 1.19858 0.97709 0.90375 1.00890 1.20680 0.91803 0.97842 1.03413 1.18945 0.93335 0.88554 0.98827 1.59299 1.10534 1.16358 1.35571 1.22031 0.85745 0.98801 1.00769 1.21424 0.99073 0.97507 0.97271 1.20616 0.99083 1.01724 0.94494 1.20550 0.95579 0.99664 0.99444 1.21900 0.97797 0.99357 0.99563 1.22122 1.00028 0.98386 0.85664 1.21324 1.00371 0.91795 1.05739 1.21099 0.93742 0.98478 1.00574 1.17799 0.91049 0.85822 1.04368 1.43489 1.25943 1.08594 1.52572 1.21612 0.86309 0.85950 0.76197 1.90658 1.23269 1.83851 1.46733 1.21659 0.99677 0.90368 1.03859 1.18690 0.94326 0.92935 0.93599 1.21712 1.04814 0.97277 1.34189 0.90373 1.26164 0.96085 1.03428 0.94937 1.70186 1.19484 1.31943 1.36216 0.85301 0.78105 0.77451 0.79269 1.19712 1.21291 1.17780 0.88874 0.89558 0.91631 0.83074 0.93990 0.91795 0.90152 0.90018 0.90719 0.93268 0.90739 0.91711 0.90121 0.93563 0.88985 0.90291 0.85450 0.87618 0.73533 0.87233 0.87208 0.99996 0.99900 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.46 71.24 0.67 -1.04 16 2 C -0.09 -1.95 5.89 -19.76 -0.12 -2.07 16 3 C -0.12 -2.49 8.61 22.38 0.19 -2.30 16 4 C 0.10 2.41 5.30 38.16 0.20 2.61 16 5 N -0.50 -9.60 4.71 -698.90 -3.30 -12.90 16 6 C 0.05 0.97 4.09 85.27 0.35 1.32 16 7 C -0.12 -1.49 5.63 30.21 0.17 -1.32 16 8 C -0.12 -1.42 5.30 28.85 0.15 -1.27 16 9 C -0.12 -1.22 5.30 28.86 0.15 -1.07 16 10 C -0.15 -1.98 5.59 30.21 0.17 -1.82 16 11 C 0.06 0.87 5.06 85.26 0.43 1.30 16 12 C -0.17 -4.92 8.95 22.38 0.20 -4.72 16 13 C -0.12 -4.03 8.70 22.37 0.19 -3.84 16 14 C 0.10 3.13 6.29 38.10 0.24 3.37 16 15 N -0.66 -19.29 4.76 -303.36 -1.44 -20.73 16 16 C 0.51 20.17 7.67 87.66 0.67 20.85 16 17 O -0.57 -28.33 13.39 -3.06 -0.04 -28.37 16 18 C -0.12 -4.62 5.64 29.85 0.17 -4.45 16 19 C 0.04 2.35 4.26 29.85 0.13 2.48 16 20 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 21 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 22 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 23 N -0.94 -59.99 13.29 21.45 0.28 -59.71 16 24 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 30 H 0.06 1.06 7.16 -2.39 -0.02 1.04 16 31 H 0.15 2.41 7.75 -2.91 -0.02 2.38 16 32 H 0.04 0.85 4.36 -2.39 -0.01 0.83 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 0.98 7.08 -2.39 -0.02 0.97 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.69 7.52 -2.39 -0.02 0.67 16 38 H 0.07 0.64 7.52 -2.38 -0.02 0.62 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.84 6.94 -2.39 -0.02 0.82 16 42 H 0.09 1.04 6.59 -2.38 -0.02 1.02 16 43 H 0.08 1.04 6.80 -2.39 -0.02 1.02 16 44 H 0.13 3.46 5.59 -2.91 -0.02 3.45 16 45 H 0.11 4.32 6.18 -2.91 -0.02 4.30 16 46 H 0.43 8.80 7.83 -92.70 -0.73 8.08 16 47 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 48 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 49 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 50 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 51 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -77.95 390.11 2.41 -75.54 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.20 Total: 22.34 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.68 Total: -22.60 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -4.46 Total: -93.34 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.04 Total: -28.37 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -77.95 2.41 -75.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291816980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.696 kcal (2) G-P(sol) polarization free energy of solvation -77.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds