Wall clock time and date at job start Tue Mar 31 2020 15:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38085 * 119.99574 * 2 1 4 4 C 1.38871 * 119.99477 * 180.27415 * 3 2 1 5 5 N 1.39888 * 120.00713 * 179.72300 * 4 3 2 6 6 C 1.46845 * 110.99736 * 119.75269 * 5 4 3 7 7 C 1.53045 * 109.52021 * 185.83912 * 6 5 4 8 8 C 1.53114 * 109.28012 * 300.82591 * 7 6 5 9 9 C 1.53117 * 109.16388 * 57.65007 * 8 7 6 10 10 C 1.46836 * 111.00127 * 243.96581 * 5 4 3 11 11 H 1.09003 * 109.46225 * 294.16094 * 10 5 4 12 12 C 1.53003 * 109.46482 * 54.13926 * 10 5 4 13 13 C 1.38912 * 119.98867 * 359.44903 * 4 3 2 14 14 C 1.38048 * 119.99458 * 0.56983 * 13 4 3 15 15 C 1.38828 * 120.00102 * 180.02562 * 2 1 3 16 16 N 1.40152 * 119.99229 * 359.97438 * 15 2 1 17 17 C 1.34783 * 120.00223 * 205.75666 * 16 15 2 18 18 O 1.21294 * 119.99642 * 356.38582 * 17 16 15 19 19 C 1.50694 * 119.99920 * 176.38685 * 17 16 15 20 20 C 1.53002 * 109.46752 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47174 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00142 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00272 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00485 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00017 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47573 * 89.99279 * 25 23 21 27 27 H 1.48505 * 109.47480 * 209.99812 * 25 23 21 28 28 H 1.48499 * 109.46973 * 329.99420 * 25 23 21 29 29 H 1.08996 * 109.46784 * 90.00435 * 1 2 3 30 30 H 1.09004 * 109.46993 * 210.00196 * 1 2 3 31 31 H 1.08998 * 109.46760 * 329.99933 * 1 2 3 32 32 H 1.07992 * 120.00530 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.46969 * 305.85017 * 6 5 4 34 34 H 1.08998 * 109.46940 * 65.82939 * 6 5 4 35 35 H 1.09003 * 109.49887 * 180.87637 * 7 6 5 36 36 H 1.09007 * 109.53283 * 60.78810 * 7 6 5 37 37 H 1.09007 * 109.51575 * 297.74420 * 8 7 6 38 38 H 1.08994 * 109.57676 * 177.59155 * 8 7 6 39 39 H 1.08993 * 109.50171 * 182.40838 * 9 8 7 40 40 H 1.08998 * 109.49942 * 62.28692 * 9 8 7 41 41 H 1.09004 * 109.46509 * 64.85767 * 12 10 5 42 42 H 1.09002 * 109.47210 * 184.84974 * 12 10 5 43 43 H 1.08994 * 109.46957 * 304.85241 * 12 10 5 44 44 H 1.08003 * 120.00548 * 180.32526 * 13 4 3 45 45 H 1.08000 * 119.99674 * 179.72275 * 14 13 4 46 46 H 0.97000 * 120.00071 * 25.76429 * 16 15 2 47 47 H 1.09004 * 109.47377 * 300.00107 * 19 17 16 48 48 H 1.08993 * 109.47431 * 60.00547 * 19 17 16 49 49 H 1.08997 * 109.46976 * 299.99581 * 20 19 17 50 50 H 1.09000 * 109.47542 * 60.00225 * 20 19 17 51 51 H 0.96994 * 120.00383 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1959 0.0000 4 6 3.5861 1.1959 -0.0058 5 7 4.2857 2.4073 -0.0116 6 6 5.1429 2.5256 1.1748 7 6 5.7786 3.9173 1.2096 8 6 6.6039 4.1282 -0.0626 9 6 5.6981 3.9517 -1.2844 10 6 5.0648 2.5590 -1.2470 11 1 5.8491 1.8027 -1.2769 12 6 4.1429 2.3855 -2.4557 13 6 4.2804 -0.0072 0.0001 14 6 3.5899 -1.2026 -0.0003 15 6 2.2012 -1.2023 -0.0005 16 7 1.5003 -2.4159 -0.0005 17 6 2.0738 -3.5254 0.5062 18 8 3.2197 -3.4889 0.9021 19 6 1.2913 -4.8111 0.5808 20 6 2.1676 -5.9066 1.1917 21 6 1.3849 -7.1922 1.2669 22 1 0.3648 -7.2249 0.9140 23 6 1.9716 -8.3271 1.7854 24 7 1.2885 -9.4490 1.8516 25 14 3.7363 -8.2710 2.3953 26 1 3.7513 -7.9062 3.8347 27 1 4.3648 -9.6045 2.2160 28 1 4.4959 -7.2576 1.6199 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6574 2.1312 -0.0004 33 1 4.5429 2.3779 2.0727 34 1 5.9268 1.7693 1.1335 35 1 6.4269 3.9994 2.0820 36 1 4.9960 4.6741 1.2654 37 1 7.4109 3.3962 -0.0987 38 1 7.0241 5.1338 -0.0629 39 1 6.2891 4.0584 -2.1940 40 1 4.9139 4.7086 -1.2683 41 1 3.4106 3.1928 -2.4729 42 1 4.7346 2.4123 -3.3707 43 1 3.6268 1.4281 -2.3845 44 1 5.3604 -0.0075 0.0009 45 1 4.1297 -2.1380 -0.0003 46 1 0.6025 -2.4575 -0.3653 47 1 0.4084 -4.6636 1.2028 48 1 0.9840 -5.1082 -0.4218 49 1 3.0507 -6.0543 0.5701 50 1 2.4746 -5.6094 2.1945 51 1 1.7013 -10.2475 2.2160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291849473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:25 Heat of formation + Delta-G solvation = -21.258849 kcal Electronic energy + Delta-G solvation = -28218.721135 eV Core-core repulsion = 24503.060605 eV Total energy + Delta-G solvation = -3715.660530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87070 -39.85409 -38.00377 -35.08529 -33.61397 -33.28282 -32.76975 -32.24759 -31.34114 -28.95051 -27.37430 -27.06251 -25.85810 -24.13065 -22.81700 -22.19024 -21.48323 -20.73312 -19.85095 -19.49530 -17.68756 -17.16872 -16.83185 -16.21951 -15.70233 -15.51779 -14.98147 -14.71095 -14.50803 -14.20205 -14.19672 -14.04820 -13.80478 -13.69512 -13.33543 -13.16312 -12.88556 -12.77221 -12.60648 -12.48618 -12.21183 -12.11167 -11.93590 -11.91302 -11.50676 -11.37950 -11.30395 -11.06185 -11.02720 -10.81751 -10.56218 -10.23736 -10.19385 -10.08392 -9.82370 -9.29505 -9.23660 -8.74734 -8.61717 -8.55162 -7.84953 -6.07082 -4.06455 1.19016 1.41599 2.89048 3.23571 3.34729 3.41607 3.51306 3.55042 3.74119 4.45105 4.46848 4.51137 4.58029 4.74876 4.84918 4.88093 5.02169 5.06519 5.09256 5.15019 5.22286 5.28158 5.28746 5.35258 5.42784 5.44924 5.47677 5.55823 5.57739 5.59579 5.64118 5.69695 5.78197 5.83564 5.87602 5.92585 5.95905 5.97745 6.02858 6.07605 6.16271 6.39913 6.52962 6.56464 6.59608 6.79859 6.91063 7.28201 7.35225 7.36981 7.55896 7.73157 8.37572 8.48709 8.95276 9.55485 11.05599 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002370 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.911121 B =11809.968960 C =12669.057359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C -0.076 4.076 4 C 0.068 3.932 5 N -0.495 5.495 6 C 0.059 3.941 7 C -0.116 4.116 8 C -0.123 4.123 9 C -0.111 4.111 10 C 0.086 3.914 11 H 0.042 0.958 12 C -0.146 4.146 13 C -0.134 4.134 14 C -0.124 4.124 15 C 0.155 3.845 16 N -0.679 5.679 17 C 0.509 3.491 18 O -0.518 6.518 19 C -0.121 4.121 20 C 0.002 3.998 21 C -0.527 4.527 22 H 0.073 0.927 23 C 0.070 3.930 24 N -0.902 5.902 25 Si 0.877 3.123 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.261 1.261 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.154 0.846 46 H 0.410 0.590 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.024 0.976 50 H 0.020 0.980 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 29.947 -7.028 31.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.095 4.095 4 C -0.027 4.027 5 N -0.217 5.217 6 C -0.068 4.068 7 C -0.154 4.154 8 C -0.161 4.161 9 C -0.149 4.149 10 C -0.021 4.021 11 H 0.060 0.940 12 C -0.204 4.204 13 C -0.154 4.154 14 C -0.144 4.144 15 C 0.059 3.941 16 N -0.323 5.323 17 C 0.300 3.700 18 O -0.393 6.393 19 C -0.161 4.161 20 C -0.036 4.036 21 C -0.564 4.564 22 H 0.091 0.909 23 C -0.132 4.132 24 N -0.541 5.541 25 Si 0.705 3.295 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.186 1.186 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.134 0.866 45 H 0.171 0.829 46 H 0.246 0.754 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.043 0.957 50 H 0.038 0.962 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.748 30.076 -6.648 31.166 hybrid contribution 1.057 -0.803 0.223 1.346 sum 5.805 29.274 -6.425 30.527 Atomic orbital electron populations 1.20711 0.90887 1.03101 1.02260 1.19553 0.96016 0.91497 1.05138 1.20582 0.92386 0.96767 0.99800 1.18583 0.92911 0.87942 1.03216 1.59623 1.28338 1.31450 1.02280 1.22134 0.95072 0.96781 0.92772 1.21594 0.99225 0.96975 0.97607 1.21598 0.97940 1.01577 0.94946 1.21640 0.98840 0.96554 0.97828 1.21658 0.94265 0.96825 0.89370 0.94007 1.21860 0.99622 1.02694 0.96195 1.21500 0.99739 0.92641 1.01558 1.21582 0.92755 0.99811 1.00293 1.17794 0.91484 0.85053 0.99756 1.43943 1.19498 1.07560 1.61321 1.21820 0.87852 0.85302 0.75052 1.90580 1.18009 1.84549 1.46136 1.21719 1.00006 0.90745 1.03655 1.19383 0.95310 0.92689 0.96253 1.21078 1.00723 0.92638 1.42000 0.90864 1.24970 0.97869 0.95290 0.95082 1.69904 1.37209 1.00791 1.46153 0.86797 0.85525 0.77396 0.79831 1.20217 1.21399 1.18575 0.91183 0.91578 0.91133 0.85458 0.90528 0.94542 0.91489 0.91029 0.92302 0.91774 0.91552 0.90999 0.91935 0.92364 0.92069 0.86617 0.82881 0.75402 0.89168 0.89152 0.95736 0.96177 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.44 36.01 0.34 -0.62 16 2 C -0.12 -1.36 5.89 -104.46 -0.62 -1.97 16 3 C -0.08 -0.84 9.52 -39.40 -0.38 -1.22 16 4 C 0.07 0.78 2.98 -83.70 -0.25 0.53 16 5 N -0.49 -4.94 4.47 -163.55 -0.73 -5.67 16 6 C 0.06 0.55 5.12 -3.83 -0.02 0.53 16 7 C -0.12 -0.86 6.09 -26.65 -0.16 -1.02 16 8 C -0.12 -0.84 6.00 -26.61 -0.16 -1.00 16 9 C -0.11 -0.80 5.37 -26.65 -0.14 -0.94 16 10 C 0.09 0.77 2.17 -67.73 -0.15 0.62 16 11 H 0.04 0.41 7.55 -51.93 -0.39 0.02 16 12 C -0.15 -1.26 9.07 37.16 0.34 -0.93 16 13 C -0.13 -1.74 8.69 -39.40 -0.34 -2.08 16 14 C -0.12 -1.87 8.78 -39.42 -0.35 -2.21 16 15 C 0.15 2.14 6.44 -83.60 -0.54 1.60 16 16 N -0.68 -9.24 4.96 -9.82 -0.05 -9.29 16 17 C 0.51 8.95 7.72 -10.99 -0.08 8.86 16 18 O -0.52 -10.89 12.92 5.54 0.07 -10.81 16 19 C -0.12 -2.24 5.64 -27.89 -0.16 -2.40 16 20 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 21 C -0.53 -14.80 9.66 -34.44 -0.33 -15.13 16 22 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 23 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 24 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 25 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.56 7.00 -51.93 -0.36 0.19 16 31 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.04 0.36 7.33 -51.93 -0.38 -0.02 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.63 6.81 -51.93 -0.35 0.27 16 44 H 0.12 1.42 7.13 -52.48 -0.37 1.04 16 45 H 0.15 2.68 5.54 -52.49 -0.29 2.39 16 46 H 0.41 4.23 7.43 -40.82 -0.30 3.92 16 47 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 49 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 50 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 51 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -32.60 395.51 -10.55 -43.15 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.72 Total: 1.39 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -3.19 Total: -15.49 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.01 Total: -41.88 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.60 -10.55 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291849473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.896 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds