Wall clock time and date at job start Tue Mar 31 2020 15:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38085 * 119.99574 * 2 1 4 4 C 1.38871 * 119.99477 * 180.27415 * 3 2 1 5 5 N 1.39888 * 120.00713 * 179.72300 * 4 3 2 6 6 C 1.46845 * 110.99736 * 119.75269 * 5 4 3 7 7 C 1.53045 * 109.52021 * 185.83912 * 6 5 4 8 8 C 1.53114 * 109.28012 * 300.82591 * 7 6 5 9 9 C 1.53117 * 109.16388 * 57.65007 * 8 7 6 10 10 C 1.46836 * 111.00127 * 243.96581 * 5 4 3 11 11 H 1.09003 * 109.46225 * 294.16094 * 10 5 4 12 12 C 1.53003 * 109.46482 * 54.13926 * 10 5 4 13 13 C 1.38912 * 119.98867 * 359.44903 * 4 3 2 14 14 C 1.38048 * 119.99458 * 0.56983 * 13 4 3 15 15 C 1.38828 * 120.00102 * 180.02562 * 2 1 3 16 16 N 1.40152 * 119.99229 * 359.97438 * 15 2 1 17 17 C 1.34783 * 120.00223 * 205.75666 * 16 15 2 18 18 O 1.21294 * 119.99642 * 356.38582 * 17 16 15 19 19 C 1.50694 * 119.99920 * 176.38685 * 17 16 15 20 20 C 1.53002 * 109.46752 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47174 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00142 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00272 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00485 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00017 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47573 * 89.99279 * 25 23 21 27 27 H 1.48505 * 109.47480 * 209.99812 * 25 23 21 28 28 H 1.48499 * 109.46973 * 329.99420 * 25 23 21 29 29 H 1.08996 * 109.46784 * 90.00435 * 1 2 3 30 30 H 1.09004 * 109.46993 * 210.00196 * 1 2 3 31 31 H 1.08998 * 109.46760 * 329.99933 * 1 2 3 32 32 H 1.07992 * 120.00530 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.46969 * 305.85017 * 6 5 4 34 34 H 1.08998 * 109.46940 * 65.82939 * 6 5 4 35 35 H 1.09003 * 109.49887 * 180.87637 * 7 6 5 36 36 H 1.09007 * 109.53283 * 60.78810 * 7 6 5 37 37 H 1.09007 * 109.51575 * 297.74420 * 8 7 6 38 38 H 1.08994 * 109.57676 * 177.59155 * 8 7 6 39 39 H 1.08993 * 109.50171 * 182.40838 * 9 8 7 40 40 H 1.08998 * 109.49942 * 62.28692 * 9 8 7 41 41 H 1.09004 * 109.46509 * 64.85767 * 12 10 5 42 42 H 1.09002 * 109.47210 * 184.84974 * 12 10 5 43 43 H 1.08994 * 109.46957 * 304.85241 * 12 10 5 44 44 H 1.08003 * 120.00548 * 180.32526 * 13 4 3 45 45 H 1.08000 * 119.99674 * 179.72275 * 14 13 4 46 46 H 0.97000 * 120.00071 * 25.76429 * 16 15 2 47 47 H 1.09004 * 109.47377 * 300.00107 * 19 17 16 48 48 H 1.08993 * 109.47431 * 60.00547 * 19 17 16 49 49 H 1.08997 * 109.46976 * 299.99581 * 20 19 17 50 50 H 1.09000 * 109.47542 * 60.00225 * 20 19 17 51 51 H 0.96994 * 120.00383 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1959 0.0000 4 6 3.5861 1.1959 -0.0058 5 7 4.2857 2.4073 -0.0116 6 6 5.1429 2.5256 1.1748 7 6 5.7786 3.9173 1.2096 8 6 6.6039 4.1282 -0.0626 9 6 5.6981 3.9517 -1.2844 10 6 5.0648 2.5590 -1.2470 11 1 5.8491 1.8027 -1.2769 12 6 4.1429 2.3855 -2.4557 13 6 4.2804 -0.0072 0.0001 14 6 3.5899 -1.2026 -0.0003 15 6 2.2012 -1.2023 -0.0005 16 7 1.5003 -2.4159 -0.0005 17 6 2.0738 -3.5254 0.5062 18 8 3.2197 -3.4889 0.9021 19 6 1.2913 -4.8111 0.5808 20 6 2.1676 -5.9066 1.1917 21 6 1.3849 -7.1922 1.2669 22 1 0.3648 -7.2249 0.9140 23 6 1.9716 -8.3271 1.7854 24 7 1.2885 -9.4490 1.8516 25 14 3.7363 -8.2710 2.3953 26 1 3.7513 -7.9062 3.8347 27 1 4.3648 -9.6045 2.2160 28 1 4.4959 -7.2576 1.6199 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6574 2.1312 -0.0004 33 1 4.5429 2.3779 2.0727 34 1 5.9268 1.7693 1.1335 35 1 6.4269 3.9994 2.0820 36 1 4.9960 4.6741 1.2654 37 1 7.4109 3.3962 -0.0987 38 1 7.0241 5.1338 -0.0629 39 1 6.2891 4.0584 -2.1940 40 1 4.9139 4.7086 -1.2683 41 1 3.4106 3.1928 -2.4729 42 1 4.7346 2.4123 -3.3707 43 1 3.6268 1.4281 -2.3845 44 1 5.3604 -0.0075 0.0009 45 1 4.1297 -2.1380 -0.0003 46 1 0.6025 -2.4575 -0.3653 47 1 0.4084 -4.6636 1.2028 48 1 0.9840 -5.1082 -0.4218 49 1 3.0507 -6.0543 0.5701 50 1 2.4746 -5.6094 2.1945 51 1 1.7013 -10.2475 2.2160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291849473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:24 Heat of formation + Delta-G solvation = -39.983309 kcal Electronic energy + Delta-G solvation = -28219.533088 eV Core-core repulsion = 24503.060605 eV Total energy + Delta-G solvation = -3716.472483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.90953 -40.89530 -39.02814 -36.11799 -35.59474 -34.22124 -33.52215 -33.42884 -32.96789 -29.98337 -28.34242 -28.05398 -27.21291 -24.98699 -23.97504 -23.07540 -22.82560 -21.67301 -21.20818 -20.32206 -19.26608 -18.58699 -17.86298 -17.58359 -16.83329 -16.43193 -16.31704 -16.03199 -15.43595 -15.37545 -15.21968 -14.94080 -14.87900 -14.68217 -14.67124 -14.26536 -14.23252 -14.00851 -13.64809 -13.42826 -13.18837 -12.99366 -12.89618 -12.81976 -12.76518 -12.66831 -12.34906 -12.12999 -12.00749 -11.98053 -11.79523 -11.63647 -11.57278 -11.42025 -11.27205 -11.13048 -10.79739 -10.68004 -9.71441 -9.47152 -8.89444 -8.33138 -6.35967 0.17882 0.41204 1.31186 1.33510 1.47652 1.56681 2.04832 2.32767 2.73081 2.77309 3.02587 3.72313 3.81191 3.88313 3.89876 3.95237 4.02625 4.19406 4.24069 4.30829 4.34960 4.36941 4.43698 4.44989 4.49861 4.58086 4.63559 4.73531 4.77906 4.85325 4.89398 4.93520 4.94247 4.99004 5.03576 5.04485 5.15993 5.22525 5.24162 5.28043 5.29727 5.31544 5.40646 5.42959 5.46298 5.50694 5.58979 5.60393 5.88764 6.04323 6.21221 6.43317 6.46683 6.70615 7.12838 7.29358 8.82350 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002370 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.911121 B =11809.968960 C =12669.057359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.105 4.105 3 C -0.077 4.077 4 C 0.077 3.923 5 N -0.492 5.492 6 C 0.056 3.944 7 C -0.111 4.111 8 C -0.122 4.122 9 C -0.106 4.106 10 C 0.082 3.918 11 H 0.028 0.972 12 C -0.142 4.142 13 C -0.143 4.143 14 C -0.144 4.144 15 C 0.130 3.870 16 N -0.658 5.658 17 C 0.513 3.487 18 O -0.560 6.560 19 C -0.114 4.114 20 C 0.005 3.995 21 C -0.528 4.528 22 H 0.053 0.947 23 C 0.014 3.986 24 N -0.942 5.942 25 Si 0.937 3.063 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.113 0.887 45 H 0.123 0.877 46 H 0.427 0.573 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.011 0.989 50 H 0.009 0.991 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.884 33.107 -7.505 34.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.096 4.096 4 C -0.017 4.017 5 N -0.214 5.214 6 C -0.071 4.071 7 C -0.149 4.149 8 C -0.160 4.160 9 C -0.144 4.144 10 C -0.024 4.024 11 H 0.046 0.954 12 C -0.199 4.199 13 C -0.164 4.164 14 C -0.165 4.165 15 C 0.036 3.964 16 N -0.303 5.303 17 C 0.304 3.696 18 O -0.438 6.438 19 C -0.153 4.153 20 C -0.033 4.033 21 C -0.566 4.566 22 H 0.071 0.929 23 C -0.184 4.184 24 N -0.583 5.583 25 Si 0.761 3.239 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.186 1.186 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.167 0.833 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.131 0.869 45 H 0.141 0.859 46 H 0.267 0.733 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.029 0.971 50 H 0.027 0.973 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.332 33.275 -7.149 34.309 hybrid contribution 1.136 -1.692 0.325 2.064 sum 5.469 31.583 -6.824 32.771 Atomic orbital electron populations 1.20821 0.88323 1.04053 1.03804 1.19860 0.97745 0.90368 1.02796 1.20868 0.92171 0.97544 0.99031 1.18758 0.93479 0.87960 1.01538 1.59784 1.28651 1.30051 1.02957 1.22187 0.94656 0.97974 0.92250 1.21571 0.99411 0.95414 0.98460 1.21608 0.97633 1.02362 0.94382 1.21623 0.99009 0.95121 0.98626 1.21751 0.93963 0.97740 0.88985 0.95381 1.21825 0.99719 1.01819 0.96560 1.21491 0.99727 0.92804 1.02373 1.21420 0.93707 0.99250 1.02108 1.17903 0.91167 0.85707 1.01669 1.43567 1.19978 1.06596 1.60178 1.21504 0.87115 0.85922 0.75099 1.90590 1.19630 1.85238 1.48309 1.21527 0.99453 0.89724 1.04634 1.19231 0.95311 0.92930 0.95869 1.21408 1.00208 0.94204 1.40776 0.92870 1.25783 1.01793 0.95160 0.95657 1.70014 1.39028 1.01573 1.47645 0.85855 0.80917 0.77624 0.79458 1.19487 1.20414 1.18631 0.89205 0.91373 0.89483 0.83286 0.91240 0.95641 0.90481 0.90718 0.92784 0.90176 0.90333 0.90657 0.91222 0.91201 0.93929 0.86899 0.85905 0.73342 0.87270 0.87276 0.97087 0.97293 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.44 71.24 0.67 -0.86 16 2 C -0.10 -2.17 5.89 -19.76 -0.12 -2.29 16 3 C -0.08 -1.54 9.52 22.39 0.21 -1.33 16 4 C 0.08 1.72 2.98 38.17 0.11 1.83 16 5 N -0.49 -9.23 4.47 -671.36 -3.00 -12.24 16 6 C 0.06 1.01 5.12 86.33 0.44 1.45 16 7 C -0.11 -1.44 6.09 30.65 0.19 -1.25 16 8 C -0.12 -1.42 6.00 30.67 0.18 -1.23 16 9 C -0.11 -1.30 5.37 30.65 0.16 -1.14 16 10 C 0.08 1.37 2.17 44.94 0.10 1.47 16 11 H 0.03 0.55 7.55 -2.39 -0.02 0.53 16 12 C -0.14 -2.23 9.07 71.98 0.65 -1.58 16 13 C -0.14 -3.83 8.69 22.39 0.19 -3.64 16 14 C -0.14 -4.50 8.78 22.37 0.20 -4.30 16 15 C 0.13 3.54 6.44 38.10 0.25 3.78 16 16 N -0.66 -17.24 4.96 -303.36 -1.51 -18.74 16 17 C 0.51 17.97 7.72 87.65 0.68 18.64 16 18 O -0.56 -24.21 12.92 -3.07 -0.04 -24.25 16 19 C -0.11 -4.13 5.64 29.85 0.17 -3.96 16 20 C 0.00 0.22 3.33 29.85 0.10 0.32 16 21 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 22 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 23 C 0.01 0.82 5.47 84.65 0.46 1.29 16 24 N -0.94 -58.69 13.96 21.45 0.30 -58.39 16 25 Si 0.94 46.70 27.47 68.60 1.88 48.58 16 26 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 28 H -0.26 -12.98 6.54 99.48 0.65 -12.33 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.92 7.00 -2.39 -0.02 0.91 16 31 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 32 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 34 H 0.03 0.51 7.33 -2.39 -0.02 0.49 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.04 0.83 6.81 -2.39 -0.02 0.81 16 44 H 0.11 2.96 7.13 -2.91 -0.02 2.94 16 45 H 0.12 4.61 5.54 -2.91 -0.02 4.60 16 46 H 0.43 7.89 7.43 -92.71 -0.69 7.21 16 47 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 48 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 49 H 0.01 0.55 7.16 -2.39 -0.02 0.54 16 50 H 0.01 0.44 7.53 -2.39 -0.02 0.43 16 51 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -72.09 395.51 2.70 -69.39 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.17 Total: 18.23 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 4.90 Total: -22.59 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -4.21 Total: -89.36 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.04 Total: -24.25 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.88 Total: 48.58 kcal Total: -72.09 2.70 -69.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291849473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.409 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds