Wall clock time and date at job start Tue Mar 31 2020 15:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38080 * 120.00457 * 2 1 4 4 C 1.38865 * 120.00208 * 179.97438 * 3 2 1 5 5 N 1.39894 * 120.00581 * 180.02562 * 4 3 2 6 6 C 1.46846 * 110.99654 * 59.29281 * 5 4 3 7 7 C 1.53039 * 109.52155 * 174.15995 * 6 5 4 8 8 C 1.53125 * 109.27960 * 59.17618 * 7 6 5 9 9 C 1.53123 * 109.15948 * 302.34948 * 8 7 6 10 10 C 1.46842 * 111.00256 * 295.08139 * 5 4 3 11 11 H 1.09000 * 109.46027 * 65.83153 * 10 5 4 12 12 C 1.53004 * 109.46456 * 305.85534 * 10 5 4 13 13 C 1.38907 * 119.98975 * 0.02562 * 4 3 2 14 14 C 1.38042 * 119.99374 * 359.97438 * 13 4 3 15 15 C 1.38837 * 119.99391 * 179.97438 * 2 1 3 16 16 N 1.40142 * 119.99878 * 0.02562 * 15 2 1 17 17 C 1.34778 * 120.00096 * 214.69057 * 16 15 2 18 18 O 1.21295 * 119.99988 * 355.51766 * 17 16 15 19 19 C 1.50705 * 119.99996 * 175.51874 * 17 16 15 20 20 C 1.52997 * 109.47156 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.46990 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00318 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99613 * 179.97438 * 21 20 19 24 24 N 1.31523 * 119.99813 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00417 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46915 * 90.00016 * 25 23 21 27 27 H 1.48496 * 109.47362 * 210.00329 * 25 23 21 28 28 H 1.48497 * 109.46789 * 330.00277 * 25 23 21 29 29 H 1.08993 * 109.47684 * 89.99631 * 1 2 3 30 30 H 1.09006 * 109.47018 * 210.00275 * 1 2 3 31 31 H 1.09003 * 109.46692 * 329.99837 * 1 2 3 32 32 H 1.08009 * 119.99716 * 0.25621 * 3 2 1 33 33 H 1.09003 * 109.46344 * 294.17483 * 6 5 4 34 34 H 1.09002 * 109.46623 * 54.14171 * 6 5 4 35 35 H 1.08998 * 109.50155 * 299.23739 * 7 6 5 36 36 H 1.08997 * 109.53690 * 179.13802 * 7 6 5 37 37 H 1.08996 * 109.52303 * 182.44213 * 8 7 6 38 38 H 1.09003 * 109.57211 * 62.28079 * 8 7 6 39 39 H 1.09002 * 109.49859 * 297.70733 * 9 8 7 40 40 H 1.09000 * 109.50089 * 177.59653 * 9 8 7 41 41 H 1.09010 * 109.46857 * 65.06953 * 12 10 5 42 42 H 1.08997 * 109.47458 * 185.06880 * 12 10 5 43 43 H 1.09000 * 109.46824 * 305.07735 * 12 10 5 44 44 H 1.08001 * 120.00126 * 179.97438 * 13 4 3 45 45 H 1.08006 * 119.99372 * 180.02562 * 14 13 4 46 46 H 0.97001 * 120.00077 * 34.68899 * 16 15 2 47 47 H 1.09001 * 109.46884 * 299.99501 * 19 17 16 48 48 H 1.08996 * 109.47331 * 59.99551 * 19 17 16 49 49 H 1.08997 * 109.47147 * 299.99802 * 20 19 17 50 50 H 1.09005 * 109.47558 * 59.99705 * 20 19 17 51 51 H 0.96996 * 119.99614 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1958 0.0000 4 6 3.5861 1.1957 0.0005 5 7 4.2857 2.4071 0.0011 6 6 3.9422 3.2126 1.1799 7 6 4.8293 4.4589 1.2239 8 6 4.6183 5.2750 -0.0544 9 6 4.9364 4.3982 -1.2688 10 6 4.0462 3.1538 -1.2404 11 1 2.9996 3.4549 -1.2869 12 6 4.3747 2.2647 -2.4415 13 6 4.2803 -0.0074 0.0005 14 6 3.5897 -1.2027 0.0005 15 6 2.2010 -1.2024 0.0005 16 7 1.5001 -2.4160 0.0005 17 6 1.9939 -3.4794 0.6653 18 8 3.0829 -3.4112 1.1951 19 6 1.1931 -4.7532 0.7502 20 6 1.9746 -5.7943 1.5541 21 6 1.1734 -7.0679 1.6395 22 1 0.2037 -7.1285 1.1681 23 6 1.6786 -8.1557 2.3196 24 7 0.9792 -9.2670 2.3947 25 14 3.3562 -8.0511 3.1346 26 1 3.1997 -7.5656 4.5292 27 1 3.9856 -9.3961 3.1463 28 1 4.2171 -7.1084 2.3759 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6574 2.1311 0.0042 33 1 2.8961 3.5133 1.1219 34 1 4.1006 2.6220 2.0822 35 1 5.8747 4.1590 1.2957 36 1 4.5641 5.0647 2.0903 37 1 5.2802 6.1410 -0.0471 38 1 3.5821 5.6089 -0.1077 39 1 5.9836 4.0974 -1.2361 40 1 4.7471 4.9604 -2.1832 41 1 3.6802 1.4249 -2.4727 42 1 4.2837 2.8455 -3.3593 43 1 5.3939 1.8899 -2.3482 44 1 5.3604 -0.0077 0.0005 45 1 4.1296 -2.1382 0.0010 46 1 0.6596 -2.4907 -0.4779 47 1 0.2423 -4.5524 1.2440 48 1 1.0076 -5.1335 -0.2543 49 1 2.9255 -5.9953 1.0608 50 1 2.1597 -5.4138 2.5586 51 1 1.3348 -10.0324 2.8728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291849477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:27 Heat of formation + Delta-G solvation = -24.105380 kcal Electronic energy + Delta-G solvation = -28193.071307 eV Core-core repulsion = 24477.287342 eV Total energy + Delta-G solvation = -3715.783965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86131 -39.82235 -37.99398 -35.05995 -33.58116 -33.24284 -32.71816 -32.49560 -31.33290 -28.75085 -27.34137 -27.14093 -25.95866 -24.22981 -22.84960 -22.05192 -21.47917 -20.59462 -19.96762 -19.55001 -17.65032 -17.16753 -16.81262 -16.18507 -15.75021 -15.55033 -14.99327 -14.74838 -14.47524 -14.27395 -14.14993 -14.07262 -13.77693 -13.74684 -13.39021 -13.14877 -12.82314 -12.65328 -12.58807 -12.55966 -12.24643 -12.18941 -11.94989 -11.90822 -11.49305 -11.39922 -11.29568 -11.07437 -11.00963 -10.82032 -10.58213 -10.22338 -10.13038 -10.04279 -9.81247 -9.33090 -9.22480 -8.75891 -8.67575 -8.53734 -7.91523 -6.05844 -4.05111 1.20659 1.35345 2.92220 3.26064 3.36264 3.43101 3.53194 3.53625 3.71797 4.41572 4.48340 4.48554 4.55567 4.71914 4.79395 4.82499 5.00022 5.02038 5.07879 5.13941 5.19663 5.27654 5.29482 5.35115 5.41260 5.42791 5.50318 5.52751 5.56914 5.57215 5.61949 5.66970 5.75106 5.81269 5.86263 5.91935 5.97158 5.99586 6.05551 6.06432 6.09395 6.38109 6.43328 6.59025 6.61745 6.78342 6.93932 7.30107 7.34633 7.37264 7.56835 7.74641 8.40908 8.50754 8.96573 9.56823 11.06816 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.002253 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.010920 B =12427.101908 C =12901.627783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C -0.133 4.133 4 C 0.073 3.927 5 N -0.495 5.495 6 C 0.060 3.940 7 C -0.117 4.117 8 C -0.122 4.122 9 C -0.112 4.112 10 C 0.087 3.913 11 H 0.041 0.959 12 C -0.146 4.146 13 C -0.081 4.081 14 C -0.114 4.114 15 C 0.152 3.848 16 N -0.683 5.683 17 C 0.509 3.491 18 O -0.518 6.518 19 C -0.121 4.121 20 C 0.001 3.999 21 C -0.526 4.526 22 H 0.073 0.927 23 C 0.069 3.931 24 N -0.902 5.902 25 Si 0.878 3.122 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.261 1.261 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.128 0.872 45 H 0.144 0.856 46 H 0.409 0.591 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.025 0.975 50 H 0.020 0.980 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 30.689 -8.927 32.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 C -0.154 4.154 4 C -0.022 4.022 5 N -0.217 5.217 6 C -0.067 4.067 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.019 4.019 11 H 0.059 0.941 12 C -0.204 4.204 13 C -0.101 4.101 14 C -0.134 4.134 15 C 0.058 3.942 16 N -0.329 5.329 17 C 0.299 3.701 18 O -0.392 6.392 19 C -0.161 4.161 20 C -0.036 4.036 21 C -0.564 4.564 22 H 0.091 0.909 23 C -0.132 4.132 24 N -0.541 5.541 25 Si 0.705 3.295 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.185 1.185 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.146 0.854 45 H 0.162 0.838 46 H 0.245 0.755 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.043 0.957 50 H 0.038 0.962 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.632 30.377 -8.416 31.859 hybrid contribution -0.552 0.106 0.273 0.625 sum 4.080 30.483 -8.143 31.814 Atomic orbital electron populations 1.20724 0.91087 1.03091 1.02173 1.19526 0.95919 0.91578 1.04151 1.21191 0.94348 0.96972 1.02844 1.18597 0.90007 0.90772 1.02781 1.59642 1.56828 1.02894 1.02336 1.22128 0.97249 0.94299 0.92994 1.21600 1.00916 0.95443 0.97535 1.21596 1.01349 0.98071 0.94965 1.21652 1.00623 0.94871 0.97841 1.21650 0.97547 0.93447 0.89296 0.94130 1.21855 1.02773 0.99573 0.96196 1.20898 1.00083 0.90152 0.98924 1.21334 0.92637 0.99322 1.00136 1.17722 0.91425 0.85025 1.00068 1.43921 1.26031 1.09817 1.53118 1.21806 0.87103 0.85059 0.76096 1.90655 1.21040 1.82705 1.44849 1.21709 0.99717 0.91084 1.03570 1.19382 0.95923 0.93138 0.95201 1.21081 1.05101 0.95387 1.34849 0.90891 1.24977 0.97407 0.95165 0.95691 1.69912 1.38114 1.03204 1.42860 0.86792 0.84994 0.77347 0.80406 1.20232 1.21405 1.18519 0.91251 0.91340 0.91491 0.86574 0.94699 0.90472 0.90933 0.91480 0.91767 0.92374 0.90915 0.91548 0.92345 0.92290 0.91659 0.85405 0.83849 0.75525 0.89262 0.89209 0.95707 0.96189 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.47 36.00 0.34 -0.67 16 2 C -0.11 -1.25 5.89 -104.46 -0.62 -1.87 16 3 C -0.13 -1.46 8.35 -39.41 -0.33 -1.79 16 4 C 0.07 0.83 3.12 -83.70 -0.26 0.57 16 5 N -0.49 -4.89 4.47 -163.56 -0.73 -5.62 16 6 C 0.06 0.53 5.11 -3.83 -0.02 0.51 16 7 C -0.12 -0.83 6.09 -26.65 -0.16 -0.99 16 8 C -0.12 -0.78 6.00 -26.60 -0.16 -0.94 16 9 C -0.11 -0.78 5.37 -26.65 -0.14 -0.92 16 10 C 0.09 0.74 2.18 -67.73 -0.15 0.59 16 11 H 0.04 0.35 7.60 -51.93 -0.39 -0.04 16 12 C -0.15 -1.24 8.84 37.16 0.33 -0.91 16 13 C -0.08 -1.04 9.96 -39.41 -0.39 -1.43 16 14 C -0.11 -1.67 8.69 -39.42 -0.34 -2.01 16 15 C 0.15 2.10 6.29 -83.60 -0.53 1.58 16 16 N -0.68 -9.29 4.75 -9.81 -0.05 -9.34 16 17 C 0.51 8.98 7.68 -10.98 -0.08 8.90 16 18 O -0.52 -11.00 13.40 5.54 0.07 -10.93 16 19 C -0.12 -2.25 5.64 -27.88 -0.16 -2.40 16 20 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 21 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 22 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 23 C 0.07 2.03 5.47 -17.81 -0.10 1.93 16 24 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 25 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.62 7.16 -51.93 -0.37 0.25 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.12 1.11 7.12 -52.48 -0.37 0.74 16 33 H 0.03 0.30 7.29 -51.93 -0.38 -0.08 16 34 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.57 7.28 -51.92 -0.38 0.19 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.14 2.39 6.19 -52.48 -0.33 2.07 16 46 H 0.41 4.23 7.84 -40.82 -0.32 3.91 16 47 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 49 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 50 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 51 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -32.79 397.24 -10.61 -43.40 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.80 Total: 0.81 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -3.20 Total: -15.09 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.00 Total: -41.94 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.79 -10.61 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291849477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.293 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds