Wall clock time and date at job start Tue Mar 31 2020 15:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38080 * 120.00457 * 2 1 4 4 C 1.38865 * 120.00208 * 179.97438 * 3 2 1 5 5 N 1.39894 * 120.00581 * 180.02562 * 4 3 2 6 6 C 1.46846 * 110.99654 * 59.29281 * 5 4 3 7 7 C 1.53039 * 109.52155 * 174.15995 * 6 5 4 8 8 C 1.53125 * 109.27960 * 59.17618 * 7 6 5 9 9 C 1.53123 * 109.15948 * 302.34948 * 8 7 6 10 10 C 1.46842 * 111.00256 * 295.08139 * 5 4 3 11 11 H 1.09000 * 109.46027 * 65.83153 * 10 5 4 12 12 C 1.53004 * 109.46456 * 305.85534 * 10 5 4 13 13 C 1.38907 * 119.98975 * 0.02562 * 4 3 2 14 14 C 1.38042 * 119.99374 * 359.97438 * 13 4 3 15 15 C 1.38837 * 119.99391 * 179.97438 * 2 1 3 16 16 N 1.40142 * 119.99878 * 0.02562 * 15 2 1 17 17 C 1.34778 * 120.00096 * 214.69057 * 16 15 2 18 18 O 1.21295 * 119.99988 * 355.51766 * 17 16 15 19 19 C 1.50705 * 119.99996 * 175.51874 * 17 16 15 20 20 C 1.52997 * 109.47156 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.46990 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00318 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99613 * 179.97438 * 21 20 19 24 24 N 1.31523 * 119.99813 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00417 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46915 * 90.00016 * 25 23 21 27 27 H 1.48496 * 109.47362 * 210.00329 * 25 23 21 28 28 H 1.48497 * 109.46789 * 330.00277 * 25 23 21 29 29 H 1.08993 * 109.47684 * 89.99631 * 1 2 3 30 30 H 1.09006 * 109.47018 * 210.00275 * 1 2 3 31 31 H 1.09003 * 109.46692 * 329.99837 * 1 2 3 32 32 H 1.08009 * 119.99716 * 0.25621 * 3 2 1 33 33 H 1.09003 * 109.46344 * 294.17483 * 6 5 4 34 34 H 1.09002 * 109.46623 * 54.14171 * 6 5 4 35 35 H 1.08998 * 109.50155 * 299.23739 * 7 6 5 36 36 H 1.08997 * 109.53690 * 179.13802 * 7 6 5 37 37 H 1.08996 * 109.52303 * 182.44213 * 8 7 6 38 38 H 1.09003 * 109.57211 * 62.28079 * 8 7 6 39 39 H 1.09002 * 109.49859 * 297.70733 * 9 8 7 40 40 H 1.09000 * 109.50089 * 177.59653 * 9 8 7 41 41 H 1.09010 * 109.46857 * 65.06953 * 12 10 5 42 42 H 1.08997 * 109.47458 * 185.06880 * 12 10 5 43 43 H 1.09000 * 109.46824 * 305.07735 * 12 10 5 44 44 H 1.08001 * 120.00126 * 179.97438 * 13 4 3 45 45 H 1.08006 * 119.99372 * 180.02562 * 14 13 4 46 46 H 0.97001 * 120.00077 * 34.68899 * 16 15 2 47 47 H 1.09001 * 109.46884 * 299.99501 * 19 17 16 48 48 H 1.08996 * 109.47331 * 59.99551 * 19 17 16 49 49 H 1.08997 * 109.47147 * 299.99802 * 20 19 17 50 50 H 1.09005 * 109.47558 * 59.99705 * 20 19 17 51 51 H 0.96996 * 119.99614 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1958 0.0000 4 6 3.5861 1.1957 0.0005 5 7 4.2857 2.4071 0.0011 6 6 3.9422 3.2126 1.1799 7 6 4.8293 4.4589 1.2239 8 6 4.6183 5.2750 -0.0544 9 6 4.9364 4.3982 -1.2688 10 6 4.0462 3.1538 -1.2404 11 1 2.9996 3.4549 -1.2869 12 6 4.3747 2.2647 -2.4415 13 6 4.2803 -0.0074 0.0005 14 6 3.5897 -1.2027 0.0005 15 6 2.2010 -1.2024 0.0005 16 7 1.5001 -2.4160 0.0005 17 6 1.9939 -3.4794 0.6653 18 8 3.0829 -3.4112 1.1951 19 6 1.1931 -4.7532 0.7502 20 6 1.9746 -5.7943 1.5541 21 6 1.1734 -7.0679 1.6395 22 1 0.2037 -7.1285 1.1681 23 6 1.6786 -8.1557 2.3196 24 7 0.9792 -9.2670 2.3947 25 14 3.3562 -8.0511 3.1346 26 1 3.1997 -7.5656 4.5292 27 1 3.9856 -9.3961 3.1463 28 1 4.2171 -7.1084 2.3759 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6574 2.1311 0.0042 33 1 2.8961 3.5133 1.1219 34 1 4.1006 2.6220 2.0822 35 1 5.8747 4.1590 1.2957 36 1 4.5641 5.0647 2.0903 37 1 5.2802 6.1410 -0.0471 38 1 3.5821 5.6089 -0.1077 39 1 5.9836 4.0974 -1.2361 40 1 4.7471 4.9604 -2.1832 41 1 3.6802 1.4249 -2.4727 42 1 4.2837 2.8455 -3.3593 43 1 5.3939 1.8899 -2.3482 44 1 5.3604 -0.0077 0.0005 45 1 4.1296 -2.1382 0.0010 46 1 0.6596 -2.4907 -0.4779 47 1 0.2423 -4.5524 1.2440 48 1 1.0076 -5.1335 -0.2543 49 1 2.9255 -5.9953 1.0608 50 1 2.1597 -5.4138 2.5586 51 1 1.3348 -10.0324 2.8728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291849477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:26 Heat of formation + Delta-G solvation = -42.888632 kcal Electronic energy + Delta-G solvation = -28193.885810 eV Core-core repulsion = 24477.287342 eV Total energy + Delta-G solvation = -3716.598468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86376 -40.86852 -39.00769 -36.08598 -35.57065 -34.15789 -33.50235 -33.42578 -33.14229 -29.79355 -28.29944 -28.01510 -27.37125 -25.12651 -23.85905 -23.03780 -22.76114 -21.47319 -21.29574 -20.39637 -19.26664 -18.57535 -17.76099 -17.59170 -16.85483 -16.38986 -16.32402 -16.06983 -15.44504 -15.35744 -15.22381 -15.02098 -14.71419 -14.62631 -14.56750 -14.43660 -14.26114 -13.97604 -13.51414 -13.38891 -13.25793 -12.99898 -12.89660 -12.86865 -12.78236 -12.66184 -12.34098 -12.13166 -11.99501 -11.94666 -11.78342 -11.61440 -11.48435 -11.41328 -11.23649 -11.11330 -10.78880 -10.75345 -9.73013 -9.42704 -8.94820 -8.32426 -6.35180 0.19682 0.38474 1.32199 1.34551 1.48968 1.58333 2.07550 2.33749 2.72123 2.78664 3.03335 3.76484 3.82166 3.88940 3.90025 3.93475 3.99117 4.21104 4.24132 4.31127 4.38172 4.38741 4.44257 4.46206 4.52472 4.59323 4.70855 4.72618 4.78610 4.78845 4.89243 4.90846 4.93437 4.98050 5.00228 5.05261 5.16743 5.24722 5.25061 5.25662 5.31951 5.33011 5.39000 5.42120 5.46802 5.51216 5.57794 5.60572 5.91366 6.09740 6.21928 6.43668 6.48469 6.71359 7.16123 7.30131 8.83023 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.002253 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.010920 B =12427.101908 C =12901.627783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.132 4.132 4 C 0.084 3.916 5 N -0.505 5.505 6 C 0.058 3.942 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.109 4.109 10 C 0.087 3.913 11 H 0.045 0.955 12 C -0.143 4.143 13 C -0.093 4.093 14 C -0.130 4.130 15 C 0.127 3.873 16 N -0.661 5.661 17 C 0.514 3.486 18 O -0.561 6.561 19 C -0.113 4.113 20 C 0.005 3.995 21 C -0.528 4.528 22 H 0.053 0.947 23 C 0.014 3.986 24 N -0.942 5.942 25 Si 0.937 3.063 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.261 1.261 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.426 0.574 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.011 0.989 50 H 0.008 0.992 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 33.909 -9.513 35.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.153 4.153 4 C -0.010 4.010 5 N -0.227 5.227 6 C -0.068 4.068 7 C -0.152 4.152 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.019 4.019 11 H 0.063 0.937 12 C -0.201 4.201 13 C -0.113 4.113 14 C -0.151 4.151 15 C 0.033 3.967 16 N -0.308 5.308 17 C 0.304 3.696 18 O -0.439 6.439 19 C -0.153 4.153 20 C -0.033 4.033 21 C -0.566 4.566 22 H 0.071 0.929 23 C -0.184 4.184 24 N -0.583 5.583 25 Si 0.762 3.238 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.186 1.186 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.144 0.856 45 H 0.134 0.866 46 H 0.265 0.735 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.030 0.970 50 H 0.027 0.973 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.009 33.635 -9.034 35.057 hybrid contribution -0.400 -0.796 0.394 0.974 sum 3.608 32.840 -8.640 34.148 Atomic orbital electron populations 1.20816 0.88759 1.03805 1.03690 1.19813 0.97528 0.90634 1.02142 1.21433 0.94151 0.97657 1.02052 1.18689 0.90432 0.90959 1.00968 1.59667 1.56881 1.02751 1.03444 1.22169 0.98070 0.94631 0.91923 1.21586 0.99975 0.94877 0.98724 1.21590 1.02027 0.98096 0.93962 1.21646 0.99742 0.94334 0.98979 1.21726 0.98141 0.93779 0.88281 0.93737 1.21833 1.01689 0.99329 0.97243 1.20906 1.00150 0.90408 0.99827 1.21199 0.93427 0.98836 1.01640 1.17836 0.91198 0.85582 1.02083 1.43536 1.26319 1.08930 1.52024 1.21478 0.86323 0.85583 0.76171 1.90652 1.22725 1.83465 1.47044 1.21518 0.99586 0.90351 1.03855 1.19230 0.95516 0.93130 0.95469 1.21409 1.04602 0.96865 1.33709 0.92908 1.25793 1.00940 0.95041 0.96654 1.70021 1.39945 1.04051 1.44253 0.85851 0.80825 0.77610 0.79559 1.19509 1.20406 1.18571 0.89212 0.91439 0.90001 0.84431 0.94033 0.91849 0.91782 0.90178 0.90559 0.91752 0.91702 0.89995 0.93904 0.90536 0.92620 0.85562 0.86606 0.73491 0.87376 0.87333 0.97048 0.97317 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.47 71.23 0.67 -0.97 16 2 C -0.10 -2.07 5.89 -19.76 -0.12 -2.19 16 3 C -0.13 -2.62 8.35 22.38 0.19 -2.44 16 4 C 0.08 1.84 3.12 38.16 0.12 1.96 16 5 N -0.50 -9.34 4.47 -671.37 -3.00 -12.34 16 6 C 0.06 0.94 5.11 86.33 0.44 1.38 16 7 C -0.11 -1.39 6.09 30.65 0.19 -1.20 16 8 C -0.12 -1.18 6.00 30.68 0.18 -1.00 16 9 C -0.11 -1.25 5.37 30.65 0.16 -1.08 16 10 C 0.09 1.29 2.18 44.94 0.10 1.39 16 11 H 0.04 0.64 7.60 -2.39 -0.02 0.63 16 12 C -0.14 -2.23 8.84 71.98 0.64 -1.60 16 13 C -0.09 -2.46 9.96 22.38 0.22 -2.23 16 14 C -0.13 -3.96 8.69 22.38 0.19 -3.76 16 15 C 0.13 3.43 6.29 38.11 0.24 3.67 16 16 N -0.66 -17.33 4.75 -303.34 -1.44 -18.77 16 17 C 0.51 18.04 7.68 87.66 0.67 18.72 16 18 O -0.56 -24.41 13.40 -3.08 -0.04 -24.45 16 19 C -0.11 -4.14 5.64 29.85 0.17 -3.97 16 20 C 0.00 0.22 3.33 29.85 0.10 0.32 16 21 C -0.53 -30.11 9.66 25.60 0.25 -29.87 16 22 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 23 C 0.01 0.80 5.47 84.65 0.46 1.26 16 24 N -0.94 -58.78 13.96 21.45 0.30 -58.49 16 25 Si 0.94 46.82 27.47 68.60 1.88 48.70 16 26 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 27 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 28 H -0.26 -12.98 6.54 99.48 0.65 -12.33 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.02 7.16 -2.38 -0.02 1.00 16 31 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 32 H 0.14 2.15 7.12 -2.91 -0.02 2.13 16 33 H 0.04 0.61 7.29 -2.39 -0.02 0.59 16 34 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.04 0.79 7.28 -2.38 -0.02 0.78 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 45 H 0.12 4.14 6.19 -2.91 -0.02 4.13 16 46 H 0.43 7.94 7.84 -92.71 -0.73 7.22 16 47 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 48 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 49 H 0.01 0.58 7.15 -2.39 -0.02 0.56 16 50 H 0.01 0.43 7.53 -2.38 -0.02 0.41 16 51 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -72.22 397.24 2.71 -69.51 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.12 Total: 17.44 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 4.88 Total: -21.60 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -4.14 Total: -89.60 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.45 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.88 Total: 48.70 kcal Total: -72.22 2.71 -69.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291849477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.623 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds