Wall clock time and date at job start Tue Mar 31 2020 17:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00029 * 2 1 4 4 N 1.46897 * 109.47256 * 124.11073 * 3 2 1 5 5 C 1.46896 * 110.99929 * 298.60211 * 4 3 2 6 6 C 1.50706 * 109.47513 * 287.97272 * 5 4 3 7 7 H 1.07994 * 119.99380 * 354.68555 * 6 5 4 8 8 C 1.37872 * 119.99894 * 174.68363 * 6 5 4 9 9 N 1.31512 * 120.00320 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99778 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47046 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47429 * 119.99617 * 10 8 6 13 13 H 1.48498 * 109.47233 * 239.99809 * 10 8 6 14 14 C 1.46899 * 111.00270 * 62.56099 * 4 3 2 15 15 C 1.50694 * 109.47312 * 66.04558 * 14 4 3 16 16 O 1.21282 * 119.99959 * 0.02562 * 15 14 4 17 17 N 1.34775 * 120.00277 * 179.97438 * 15 14 4 18 18 C 1.46502 * 119.99925 * 0.02562 * 17 15 14 19 19 C 1.46500 * 120.00555 * 179.97438 * 17 15 14 20 20 C 1.50695 * 109.47177 * 270.00651 * 19 17 15 21 21 C 1.38240 * 119.99874 * 269.71855 * 20 19 17 22 22 C 1.38233 * 119.99826 * 179.76487 * 21 20 19 23 23 C 1.38238 * 120.00406 * 0.49273 * 22 21 20 24 24 C 1.50694 * 120.00167 * 179.76709 * 23 22 21 25 25 C 1.53007 * 109.47044 * 270.01771 * 24 23 22 26 26 C 1.38237 * 119.99506 * 359.78257 * 23 22 21 27 27 C 1.38233 * 120.00417 * 89.99842 * 20 19 17 28 28 H 1.07998 * 119.99852 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.99806 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99676 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47150 * 4.10562 * 3 2 1 32 32 H 1.09009 * 109.46866 * 244.11093 * 3 2 1 33 33 H 1.08998 * 109.47169 * 47.97355 * 5 4 3 34 34 H 1.08999 * 109.47442 * 167.97322 * 5 4 3 35 35 H 0.96998 * 119.99988 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46855 * 306.04284 * 14 4 3 37 37 H 1.09003 * 109.47018 * 186.04537 * 14 4 3 38 38 H 1.09001 * 109.47110 * 89.99108 * 18 17 15 39 39 H 1.08997 * 109.47148 * 209.99997 * 18 17 15 40 40 H 1.09009 * 109.46802 * 329.99839 * 18 17 15 41 41 H 1.09004 * 109.46392 * 30.00281 * 19 17 15 42 42 H 1.08994 * 109.47105 * 150.00185 * 19 17 15 43 43 H 1.07995 * 119.99948 * 0.02562 * 21 20 19 44 44 H 1.08008 * 119.99624 * 180.25359 * 22 21 20 45 45 H 1.09001 * 109.47260 * 30.01886 * 24 23 22 46 46 H 1.08994 * 109.47298 * 150.02158 * 24 23 22 47 47 H 1.08993 * 109.46965 * 179.97438 * 25 24 23 48 48 H 1.08992 * 109.47064 * 300.00369 * 25 24 23 49 49 H 1.09006 * 109.46386 * 59.99928 * 25 24 23 50 50 H 1.08002 * 119.99892 * 179.97438 * 26 23 22 51 51 H 1.08005 * 120.00136 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3408 1.1467 5 6 2.2432 1.2547 2.4140 6 6 1.5164 2.5515 2.6614 7 1 1.6624 3.3880 1.9942 8 6 0.6651 2.6698 3.7395 9 7 0.4869 1.6508 4.5517 10 14 -0.2363 4.2769 4.0458 11 1 0.1325 5.2594 2.9949 12 1 -1.7015 4.0380 4.0069 13 1 0.1429 4.8110 5.3785 14 6 3.9869 0.2747 1.0495 15 6 4.8823 0.5352 -0.1342 16 8 4.7007 1.5131 -0.8284 17 7 5.8856 -0.3178 -0.4210 18 6 6.1053 -1.4986 0.4178 19 6 6.7557 -0.0648 -1.5721 20 6 6.1779 -0.7303 -2.7945 21 6 6.5357 -2.0279 -3.1093 22 6 6.0019 -2.6400 -4.2279 23 6 5.1180 -1.9511 -5.0373 24 6 4.5402 -2.6166 -6.2596 25 6 5.4489 -2.3524 -7.4619 26 6 4.7646 -0.6515 -4.7256 27 6 5.2944 -0.0412 -3.6041 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3574 2.1323 0.0736 32 1 2.6338 1.3953 -0.9246 33 1 1.5224 0.4388 2.3601 34 1 2.9421 1.0687 3.2294 35 1 -0.1117 1.7342 5.3103 36 1 3.4873 -0.6857 0.9228 37 1 4.5852 0.2557 1.9605 38 1 5.5262 -2.3351 0.0266 39 1 7.1645 -1.7559 0.4126 40 1 5.7887 -1.2833 1.4384 41 1 6.8286 1.0092 -1.7433 42 1 7.7481 -0.4692 -1.3731 43 1 7.2291 -2.5648 -2.4791 44 1 6.2784 -3.6552 -4.4716 45 1 4.4673 -3.6906 -6.0884 46 1 3.5478 -2.2122 -6.4586 47 1 5.0312 -2.8341 -8.3458 48 1 5.5218 -1.2784 -7.6331 49 1 6.4414 -2.7568 -7.2628 50 1 4.0744 -0.1131 -5.3582 51 1 5.0179 0.9740 -3.3604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292286713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:34 Heat of formation + Delta-G solvation = 16.235529 kcal Electronic energy + Delta-G solvation = -28500.956624 eV Core-core repulsion = 24786.921973 eV Total energy + Delta-G solvation = -3714.034652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.14032 -39.19177 -36.93164 -35.55440 -34.22863 -32.77542 -32.08759 -31.00242 -30.71474 -28.26484 -27.18560 -26.65504 -25.46998 -23.98293 -23.01976 -22.76896 -21.01317 -20.66247 -19.50376 -18.44050 -16.84890 -16.59813 -16.18987 -15.90475 -15.62874 -15.50281 -15.24847 -14.61059 -14.30253 -14.18817 -13.94374 -13.91558 -13.67066 -13.44219 -13.20619 -13.02935 -12.91706 -12.58033 -12.38405 -12.19531 -12.13395 -11.97247 -11.87499 -11.38359 -11.33166 -11.12212 -11.04720 -10.93154 -10.89491 -10.65558 -10.48730 -10.44922 -9.94412 -9.60224 -9.08707 -8.98047 -8.70598 -8.66042 -8.47628 -8.37655 -7.18162 -5.97745 -3.97605 1.17212 1.34731 2.90662 3.01328 3.10195 3.34440 3.41890 3.48341 3.76220 4.47252 4.53154 4.59107 4.73478 4.81961 4.91621 4.98112 5.07842 5.09180 5.13754 5.23749 5.29471 5.36824 5.38050 5.39452 5.50630 5.56882 5.61374 5.62831 5.63547 5.69167 5.74414 5.86149 5.86673 5.96573 5.98153 6.01673 6.31141 6.33140 6.47802 6.52002 6.54328 6.59325 6.85125 6.93550 7.18655 7.25178 7.37293 7.47216 7.48472 7.87810 8.10222 8.23050 8.51023 8.60621 9.11260 9.66094 11.12954 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.002692 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.425461 B =10400.288019 C =11109.323294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.182 4.182 3 C 0.086 3.914 4 N -0.512 5.512 5 C 0.190 3.810 6 C -0.498 4.498 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.036 3.964 15 C 0.519 3.481 16 O -0.515 6.515 17 N -0.622 5.622 18 C 0.080 3.920 19 C 0.156 3.844 20 C -0.108 4.108 21 C -0.105 4.105 22 C -0.125 4.125 23 C -0.082 4.082 24 C -0.086 4.086 25 C -0.146 4.146 26 C -0.120 4.120 27 C -0.090 4.090 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.007 0.993 34 H 0.022 0.978 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.119 0.881 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.953 -12.164 -17.830 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.202 4.202 3 C -0.042 4.042 4 N -0.235 5.235 5 C 0.066 3.934 6 C -0.537 4.537 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.096 4.096 15 C 0.308 3.692 16 O -0.389 6.389 17 N -0.357 5.357 18 C -0.064 4.064 19 C 0.034 3.966 20 C -0.109 4.109 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.083 4.083 24 C -0.123 4.123 25 C -0.203 4.203 26 C -0.138 4.138 27 C -0.108 4.108 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.025 0.975 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.137 0.863 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.016 -11.183 -18.006 24.874 hybrid contribution -0.995 -0.329 0.516 1.168 sum 12.021 -11.512 -17.490 24.144 Atomic orbital electron populations 1.23685 0.96003 1.01081 1.00952 1.23598 0.96783 0.99839 0.99932 1.21384 0.94526 0.93778 0.94462 1.62163 1.14957 1.41806 1.04573 1.19821 0.92125 0.97539 0.83953 1.21158 1.24035 0.98097 1.10378 0.91805 1.24955 0.96880 0.96608 0.96144 1.69964 1.37929 1.30286 1.15824 0.86484 0.79288 0.83835 0.78102 1.19615 1.21192 1.21109 1.21999 0.95509 0.95876 0.96177 1.20998 0.80172 0.81860 0.86216 1.90610 1.69462 1.27808 1.50997 1.47977 1.32859 1.26025 1.28881 1.21789 1.01675 0.87644 0.95268 1.20287 0.92179 1.01377 0.82771 1.20262 0.98878 0.94840 0.96957 1.20980 0.99959 0.94382 0.97057 1.20936 0.98171 0.99670 0.95486 1.19898 0.97382 0.94496 0.96490 1.20545 0.99049 1.00267 0.92453 1.21740 0.99595 1.01974 0.96987 1.21057 1.00466 0.94646 0.97658 1.21250 0.95303 1.00573 0.93690 0.88403 0.89806 0.89134 0.89876 0.90208 0.97506 0.96003 0.93132 0.92866 0.88695 0.92919 0.91314 0.90585 0.89060 0.90119 0.86394 0.86442 0.91182 0.91050 0.92490 0.92515 0.92640 0.86254 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 14.32 29.01 0.42 -2.91 16 2 C -0.18 -3.49 7.46 -36.03 -0.27 -3.76 16 3 C 0.09 1.82 5.31 -4.98 -0.03 1.79 16 4 N -0.51 -11.42 4.39 -238.97 -1.05 -12.47 16 5 C 0.19 4.93 4.60 -4.98 -0.02 4.91 16 6 C -0.50 -14.15 8.51 -34.44 -0.29 -14.44 16 7 H 0.06 1.85 7.68 -52.49 -0.40 1.44 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 10 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.04 0.64 3.82 -4.98 -0.02 0.62 16 15 C 0.52 8.67 7.38 -10.99 -0.08 8.59 16 16 O -0.51 -10.14 13.43 5.56 0.07 -10.06 16 17 N -0.62 -7.86 2.86 -182.96 -0.52 -8.38 16 18 C 0.08 0.74 10.29 59.85 0.62 1.36 16 19 C 0.16 1.75 5.58 -5.20 -0.03 1.72 16 20 C -0.11 -1.24 5.46 -104.63 -0.57 -1.82 16 21 C -0.11 -1.04 9.70 -39.58 -0.38 -1.43 16 22 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 23 C -0.08 -0.83 5.13 -104.63 -0.54 -1.37 16 24 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 25 C -0.15 -1.00 9.90 37.16 0.37 -0.63 16 26 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 27 C -0.09 -1.14 9.70 -39.58 -0.38 -1.52 16 28 H 0.10 1.86 7.84 -52.49 -0.41 1.45 16 29 H 0.08 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.09 1.63 6.75 -52.48 -0.35 1.27 16 31 H 0.08 1.90 7.02 -51.93 -0.36 1.54 16 32 H 0.08 1.66 5.84 -51.92 -0.30 1.36 16 33 H 0.01 0.20 6.77 -51.93 -0.35 -0.16 16 34 H 0.02 0.59 7.81 -51.93 -0.41 0.19 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 0.90 6.23 -51.93 -0.32 0.58 16 37 H 0.10 1.60 7.12 -51.93 -0.37 1.23 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 40 H 0.08 0.71 6.44 -51.92 -0.33 0.37 16 41 H 0.09 1.15 7.36 -51.93 -0.38 0.77 16 42 H 0.08 0.68 7.84 -51.93 -0.41 0.27 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 45 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 46 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 51 H 0.13 1.82 7.59 -52.48 -0.40 1.42 16 LS Contribution 412.36 15.07 6.21 6.21 Total: -1.00 -32.64 412.36 -10.40 -43.03 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.58 Total: 2.25 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.25 Total: -11.61 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.84 Total: -46.81 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.64 -10.40 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292286713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.269 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds