Wall clock time and date at job start Tue Mar 31 2020 17:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00029 * 2 1 4 4 N 1.46897 * 109.47256 * 124.11073 * 3 2 1 5 5 C 1.46896 * 110.99929 * 298.60211 * 4 3 2 6 6 C 1.50706 * 109.47513 * 287.97272 * 5 4 3 7 7 H 1.07994 * 119.99380 * 354.68555 * 6 5 4 8 8 C 1.37872 * 119.99894 * 174.68363 * 6 5 4 9 9 N 1.31512 * 120.00320 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99778 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47046 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47429 * 119.99617 * 10 8 6 13 13 H 1.48498 * 109.47233 * 239.99809 * 10 8 6 14 14 C 1.46899 * 111.00270 * 62.56099 * 4 3 2 15 15 C 1.50694 * 109.47312 * 66.04558 * 14 4 3 16 16 O 1.21282 * 119.99959 * 0.02562 * 15 14 4 17 17 N 1.34775 * 120.00277 * 179.97438 * 15 14 4 18 18 C 1.46502 * 119.99925 * 0.02562 * 17 15 14 19 19 C 1.46500 * 120.00555 * 179.97438 * 17 15 14 20 20 C 1.50695 * 109.47177 * 270.00651 * 19 17 15 21 21 C 1.38240 * 119.99874 * 269.71855 * 20 19 17 22 22 C 1.38233 * 119.99826 * 179.76487 * 21 20 19 23 23 C 1.38238 * 120.00406 * 0.49273 * 22 21 20 24 24 C 1.50694 * 120.00167 * 179.76709 * 23 22 21 25 25 C 1.53007 * 109.47044 * 270.01771 * 24 23 22 26 26 C 1.38237 * 119.99506 * 359.78257 * 23 22 21 27 27 C 1.38233 * 120.00417 * 89.99842 * 20 19 17 28 28 H 1.07998 * 119.99852 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.99806 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99676 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47150 * 4.10562 * 3 2 1 32 32 H 1.09009 * 109.46866 * 244.11093 * 3 2 1 33 33 H 1.08998 * 109.47169 * 47.97355 * 5 4 3 34 34 H 1.08999 * 109.47442 * 167.97322 * 5 4 3 35 35 H 0.96998 * 119.99988 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46855 * 306.04284 * 14 4 3 37 37 H 1.09003 * 109.47018 * 186.04537 * 14 4 3 38 38 H 1.09001 * 109.47110 * 89.99108 * 18 17 15 39 39 H 1.08997 * 109.47148 * 209.99997 * 18 17 15 40 40 H 1.09009 * 109.46802 * 329.99839 * 18 17 15 41 41 H 1.09004 * 109.46392 * 30.00281 * 19 17 15 42 42 H 1.08994 * 109.47105 * 150.00185 * 19 17 15 43 43 H 1.07995 * 119.99948 * 0.02562 * 21 20 19 44 44 H 1.08008 * 119.99624 * 180.25359 * 22 21 20 45 45 H 1.09001 * 109.47260 * 30.01886 * 24 23 22 46 46 H 1.08994 * 109.47298 * 150.02158 * 24 23 22 47 47 H 1.08993 * 109.46965 * 179.97438 * 25 24 23 48 48 H 1.08992 * 109.47064 * 300.00369 * 25 24 23 49 49 H 1.09006 * 109.46386 * 59.99928 * 25 24 23 50 50 H 1.08002 * 119.99892 * 179.97438 * 26 23 22 51 51 H 1.08005 * 120.00136 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3408 1.1467 5 6 2.2432 1.2547 2.4140 6 6 1.5164 2.5515 2.6614 7 1 1.6624 3.3880 1.9942 8 6 0.6651 2.6698 3.7395 9 7 0.4869 1.6508 4.5517 10 14 -0.2363 4.2769 4.0458 11 1 0.1325 5.2594 2.9949 12 1 -1.7015 4.0380 4.0069 13 1 0.1429 4.8110 5.3785 14 6 3.9869 0.2747 1.0495 15 6 4.8823 0.5352 -0.1342 16 8 4.7007 1.5131 -0.8284 17 7 5.8856 -0.3178 -0.4210 18 6 6.1053 -1.4986 0.4178 19 6 6.7557 -0.0648 -1.5721 20 6 6.1779 -0.7303 -2.7945 21 6 6.5357 -2.0279 -3.1093 22 6 6.0019 -2.6400 -4.2279 23 6 5.1180 -1.9511 -5.0373 24 6 4.5402 -2.6166 -6.2596 25 6 5.4489 -2.3524 -7.4619 26 6 4.7646 -0.6515 -4.7256 27 6 5.2944 -0.0412 -3.6041 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3574 2.1323 0.0736 32 1 2.6338 1.3953 -0.9246 33 1 1.5224 0.4388 2.3601 34 1 2.9421 1.0687 3.2294 35 1 -0.1117 1.7342 5.3103 36 1 3.4873 -0.6857 0.9228 37 1 4.5852 0.2557 1.9605 38 1 5.5262 -2.3351 0.0266 39 1 7.1645 -1.7559 0.4126 40 1 5.7887 -1.2833 1.4384 41 1 6.8286 1.0092 -1.7433 42 1 7.7481 -0.4692 -1.3731 43 1 7.2291 -2.5648 -2.4791 44 1 6.2784 -3.6552 -4.4716 45 1 4.4673 -3.6906 -6.0884 46 1 3.5478 -2.2122 -6.4586 47 1 5.0312 -2.8341 -8.3458 48 1 5.5218 -1.2784 -7.6331 49 1 6.4414 -2.7568 -7.2628 50 1 4.0744 -0.1131 -5.3582 51 1 5.0179 0.9740 -3.3604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292286713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:33 Heat of formation + Delta-G solvation = -1.687263 kcal Electronic energy + Delta-G solvation = -28501.733815 eV Core-core repulsion = 24786.921973 eV Total energy + Delta-G solvation = -3714.811842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25792 -40.19540 -38.48742 -36.69478 -35.02243 -34.83360 -33.73879 -31.80869 -31.61006 -29.88867 -28.40790 -27.95560 -26.65504 -25.63917 -23.91736 -23.57823 -22.71936 -21.55892 -20.89891 -19.79020 -18.41825 -17.99692 -17.55412 -17.03703 -16.86084 -16.53611 -16.32335 -16.17965 -15.88033 -15.51238 -15.34325 -14.73441 -14.58799 -14.52484 -14.21200 -14.16485 -14.04950 -13.91902 -13.68998 -13.37132 -13.17742 -13.08421 -12.80478 -12.75491 -12.66103 -12.56454 -12.55777 -12.22594 -12.17480 -12.05215 -12.01687 -11.75999 -11.65279 -11.43444 -10.74082 -10.57214 -10.16213 -9.80472 -9.68343 -9.43981 -8.94242 -8.17057 -6.24876 0.34819 0.52135 1.38525 1.39737 1.40643 1.53867 1.69999 2.05434 2.42314 2.90925 3.15208 3.41240 3.68065 3.81617 3.91932 4.01464 4.02457 4.14740 4.14979 4.19426 4.29653 4.41331 4.44902 4.45626 4.50307 4.58807 4.61474 4.65886 4.71928 4.76172 4.80964 4.94780 4.96036 5.06355 5.07972 5.11004 5.16164 5.20259 5.21937 5.33847 5.37276 5.52738 5.58352 5.66184 5.67562 5.72550 5.73758 5.86880 6.08267 6.13564 6.34005 6.35679 6.64215 6.89837 7.29116 7.43555 8.93005 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.002692 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.425461 B =10400.288019 C =11109.323294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.191 4.191 3 C 0.096 3.904 4 N -0.529 5.529 5 C 0.209 3.791 6 C -0.516 4.516 7 H 0.049 0.951 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.271 1.271 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.037 3.963 15 C 0.518 3.482 16 O -0.555 6.555 17 N -0.611 5.611 18 C 0.071 3.929 19 C 0.157 3.843 20 C -0.119 4.119 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.085 4.085 24 C -0.085 4.085 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.113 4.113 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.079 0.921 33 H -0.011 1.011 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.119 0.881 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.047 0.953 49 H 0.058 0.942 50 H 0.120 0.880 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.017 -14.508 -18.318 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.210 4.210 3 C -0.032 4.032 4 N -0.252 5.252 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.569 5.569 10 Si 0.785 3.215 11 H -0.196 1.196 12 H -0.203 1.203 13 H -0.202 1.202 14 C -0.094 4.094 15 C 0.306 3.694 16 O -0.433 6.433 17 N -0.345 5.345 18 C -0.071 4.071 19 C 0.035 3.965 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.144 4.144 23 C -0.086 4.086 24 C -0.123 4.123 25 C -0.200 4.200 26 C -0.154 4.154 27 C -0.132 4.132 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.007 0.993 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.138 0.862 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.115 -13.567 -18.504 26.939 hybrid contribution -1.270 0.332 0.608 1.447 sum 12.845 -13.235 -17.896 25.699 Atomic orbital electron populations 1.23865 0.95910 1.01899 0.99696 1.23546 0.97079 0.99389 1.01011 1.21177 0.94016 0.94051 0.93947 1.61986 1.15442 1.44431 1.03369 1.19431 0.91264 0.95773 0.85162 1.21377 1.24863 0.98749 1.10472 0.93225 1.25725 0.97515 0.99931 0.95763 1.70055 1.38511 1.32069 1.16243 0.85485 0.78254 0.79742 0.78060 1.19594 1.20271 1.20206 1.22028 0.94818 0.95002 0.97526 1.20745 0.80958 0.82148 0.85549 1.90601 1.70822 1.29738 1.52128 1.47958 1.31307 1.25924 1.29272 1.22085 1.04236 0.86254 0.94529 1.20415 0.93401 1.00451 0.82237 1.20296 0.99042 0.95741 0.96922 1.21280 0.99785 0.93462 0.97304 1.21306 0.97375 1.00749 0.94987 1.20193 0.97214 0.93870 0.97278 1.20595 0.99020 1.00798 0.91844 1.21718 0.99638 1.01575 0.97078 1.21166 1.00981 0.95670 0.97583 1.21190 0.96969 0.99870 0.95172 0.89482 0.87100 0.87438 0.92639 0.90262 0.99342 0.97734 0.92755 0.91504 0.87833 0.91929 0.87815 0.90725 0.91381 0.86340 0.83416 0.83816 0.89790 0.91231 0.91112 0.93419 0.92316 0.86225 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.49 14.32 67.78 0.97 -5.52 16 2 C -0.19 -7.37 7.46 25.65 0.19 -7.18 16 3 C 0.10 4.20 5.31 85.56 0.45 4.65 16 4 N -0.53 -24.37 4.39 -909.95 -4.00 -28.37 16 5 C 0.21 11.17 4.60 85.56 0.39 11.56 16 6 C -0.52 -30.12 8.51 25.60 0.22 -29.91 16 7 H 0.05 2.98 7.68 -2.91 -0.02 2.95 16 8 C 0.01 0.51 5.46 84.65 0.46 0.97 16 9 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 10 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 C 0.04 1.34 3.82 85.56 0.33 1.67 16 15 C 0.52 17.46 7.38 87.66 0.65 18.10 16 16 O -0.56 -22.88 13.43 -3.03 -0.04 -22.92 16 17 N -0.61 -14.62 2.86 -851.14 -2.43 -17.05 16 18 C 0.07 1.10 10.29 127.77 1.31 2.42 16 19 C 0.16 3.31 5.58 85.63 0.48 3.79 16 20 C -0.12 -2.62 5.46 -19.87 -0.11 -2.73 16 21 C -0.10 -1.68 9.70 22.27 0.22 -1.46 16 22 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 23 C -0.09 -1.61 5.13 -19.87 -0.10 -1.71 16 24 C -0.09 -1.19 6.06 29.85 0.18 -1.01 16 25 C -0.14 -1.70 9.90 71.98 0.71 -0.99 16 26 C -0.14 -3.16 9.70 22.27 0.22 -2.94 16 27 C -0.11 -3.00 9.70 22.27 0.22 -2.78 16 28 H 0.09 3.38 7.84 -2.91 -0.02 3.36 16 29 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.11 3.77 6.75 -2.91 -0.02 3.75 16 31 H 0.06 2.68 7.02 -2.39 -0.02 2.67 16 32 H 0.08 3.48 5.84 -2.38 -0.01 3.46 16 33 H -0.01 -0.63 6.77 -2.39 -0.02 -0.64 16 34 H 0.00 0.26 7.81 -2.39 -0.02 0.24 16 35 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.07 2.21 6.23 -2.39 -0.01 2.20 16 37 H 0.10 3.48 7.12 -2.39 -0.02 3.47 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.93 7.89 -2.39 -0.02 0.92 16 40 H 0.07 1.21 6.44 -2.38 -0.02 1.20 16 41 H 0.07 1.77 7.36 -2.39 -0.02 1.75 16 42 H 0.12 1.59 7.84 -2.39 -0.02 1.57 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 46 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 47 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 50 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 51 H 0.10 3.18 7.59 -2.91 -0.02 3.16 16 Total: -1.00 -72.74 412.36 3.73 -69.02 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.89 Total: 21.83 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 7.00 Total: -14.92 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -6.14 Total: -100.57 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.74 3.73 -69.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292286713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.329 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds