Wall clock time and date at job start Tue Mar 31 2020 15:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99934 * 2 1 4 4 N 1.46895 * 109.47132 * 124.51914 * 3 2 1 5 5 C 1.46897 * 110.99994 * 199.67574 * 4 3 2 6 6 C 1.50701 * 109.47414 * 66.04466 * 5 4 3 7 7 H 1.08002 * 119.99918 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99939 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99686 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00178 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47083 * 89.99927 * 10 8 6 12 12 H 1.48502 * 109.47414 * 209.99969 * 10 8 6 13 13 H 1.48500 * 109.47200 * 330.00086 * 10 8 6 14 14 C 1.46902 * 111.00379 * 75.71757 * 4 3 2 15 15 C 1.50692 * 109.47441 * 199.80355 * 14 4 3 16 16 O 1.21284 * 120.00365 * 5.29184 * 15 14 4 17 17 N 1.34780 * 119.99914 * 185.56846 * 15 14 4 18 18 C 1.39924 * 120.00062 * 175.64972 * 17 15 14 19 19 C 1.38890 * 120.07107 * 306.11505 * 18 17 15 20 20 C 1.50702 * 120.03566 * 359.97438 * 19 18 17 21 21 C 1.38101 * 119.92792 * 179.70024 * 19 18 17 22 22 C 1.38302 * 120.06640 * 0.57163 * 21 19 18 23 23 C 1.38257 * 120.14594 * 359.72232 * 22 21 19 24 24 C 1.38131 * 120.06898 * 359.97438 * 23 22 21 25 25 C 1.50706 * 120.03761 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.46976 * 300.02430 * 25 24 23 27 27 C 1.52996 * 109.46891 * 60.02660 * 25 24 23 28 28 H 1.07997 * 119.99913 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00033 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99913 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46959 * 4.51695 * 3 2 1 32 32 H 1.09001 * 109.47143 * 244.51824 * 3 2 1 33 33 H 1.08998 * 109.47208 * 186.04616 * 5 4 3 34 34 H 1.08999 * 109.46881 * 306.04505 * 5 4 3 35 35 H 0.97002 * 120.00184 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46509 * 79.79991 * 14 4 3 37 37 H 1.08998 * 109.46955 * 319.80697 * 14 4 3 38 38 H 0.96997 * 119.99935 * 355.65623 * 17 15 14 39 39 H 1.09003 * 109.46525 * 96.94177 * 20 19 18 40 40 H 1.09001 * 109.46875 * 216.93672 * 20 19 18 41 41 H 1.08990 * 109.47119 * 336.94181 * 20 19 18 42 42 H 1.08001 * 119.96216 * 180.27032 * 21 19 18 43 43 H 1.07998 * 119.92429 * 179.70652 * 22 21 19 44 44 H 1.07997 * 119.97081 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.47179 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.46910 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47092 * 300.00105 * 26 25 24 48 48 H 1.09005 * 109.46941 * 59.99753 * 26 25 24 49 49 H 1.08996 * 109.47499 * 59.99807 * 27 25 24 50 50 H 1.08999 * 109.47312 * 180.02562 * 27 25 24 51 51 H 1.09005 * 109.46939 * 300.00193 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9880 1.3368 1.1411 5 6 3.3873 2.7147 1.4570 6 6 2.1882 3.4857 1.9456 7 1 1.2256 3.0008 2.0141 8 6 2.3198 4.8106 2.3041 9 7 1.2733 5.4836 2.7300 10 14 3.9842 5.6499 2.1836 11 1 4.1361 6.2569 0.8367 12 1 4.0798 6.7109 3.2183 13 1 5.0600 4.6493 2.3998 14 6 4.1636 0.4924 0.8899 15 6 4.8277 0.1535 2.1994 16 8 4.3151 0.4923 3.2451 17 7 5.9944 -0.5213 2.2085 18 6 6.6571 -0.7566 3.4182 19 6 6.9564 0.3026 4.2653 20 6 6.5682 1.7075 3.8825 21 6 7.6050 0.0662 5.4613 22 6 7.9671 -1.2221 5.8105 23 6 7.6760 -2.2779 4.9667 24 6 7.0218 -2.0489 3.7718 25 6 6.7055 -3.2003 2.8523 26 6 8.0050 -3.8921 2.4355 27 6 5.8053 -4.2012 3.5794 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3579 2.1320 0.0809 32 1 2.6281 1.3987 -0.9277 33 1 4.1523 2.7023 2.2334 34 1 3.7859 3.1917 0.5617 35 1 1.3659 6.4156 2.9826 36 1 4.8672 1.0294 0.2538 37 1 3.8517 -0.4258 0.3923 38 1 6.3746 -0.8438 1.3765 39 1 5.6257 1.9680 4.3642 40 1 7.3452 2.4001 4.2061 41 1 6.4529 1.7705 2.8005 42 1 7.8342 0.8889 6.1225 43 1 8.4785 -1.4037 6.7442 44 1 7.9596 -3.2829 5.2423 45 1 6.1922 -2.8271 1.9661 46 1 7.7761 -4.7250 1.7708 47 1 8.6462 -3.1790 1.9175 48 1 8.5183 -4.2652 3.3217 49 1 4.8796 -3.7083 3.8764 50 1 5.5768 -5.0341 2.9146 51 1 6.3186 -4.5743 4.4657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292368859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:57 Heat of formation + Delta-G solvation = 16.133984 kcal Electronic energy + Delta-G solvation = -29282.455142 eV Core-core repulsion = 25568.416087 eV Total energy + Delta-G solvation = -3714.039055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.71437 -38.76117 -36.77309 -35.74839 -34.44420 -33.11882 -32.27722 -31.70916 -29.72703 -28.30887 -27.33117 -27.08962 -26.42964 -23.99509 -23.24057 -22.10510 -20.71100 -20.09103 -19.48375 -19.15601 -17.69771 -16.93147 -16.74437 -16.12143 -15.51243 -15.03991 -14.81988 -14.48968 -14.29018 -14.08264 -13.89898 -13.80288 -13.56266 -13.45841 -13.24353 -13.13746 -12.64959 -12.47112 -12.23310 -12.19363 -12.13048 -12.03053 -11.78878 -11.61628 -11.33278 -11.23040 -11.21893 -10.85483 -10.77486 -10.70972 -10.69377 -10.16928 -9.85164 -9.74684 -9.44288 -9.20799 -8.92434 -8.53210 -8.51964 -8.15895 -7.43966 -6.00479 -3.96451 1.31796 1.41352 2.70773 2.99788 3.23439 3.28867 3.37467 3.39220 3.75988 4.45294 4.49019 4.63938 4.80176 4.97258 5.02286 5.04222 5.05678 5.21048 5.30955 5.31539 5.36763 5.41436 5.46559 5.49686 5.54880 5.58546 5.62128 5.65292 5.66583 5.78087 5.87024 5.97239 5.98366 5.99394 6.06365 6.08278 6.26969 6.42724 6.45609 6.47847 6.51399 6.62245 6.70740 6.81055 6.90423 7.04046 7.13503 7.26824 7.49339 7.66393 7.86161 7.97597 8.57141 8.69363 9.09007 9.61089 11.12892 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.004081 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.106357 B = 6858.998930 C = 8678.055075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 C 0.084 3.916 4 N -0.503 5.503 5 C 0.164 3.836 6 C -0.501 4.501 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.035 3.965 15 C 0.507 3.493 16 O -0.475 6.475 17 N -0.691 5.691 18 C 0.150 3.850 19 C -0.068 4.068 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.088 4.088 25 C -0.055 4.055 26 C -0.143 4.143 27 C -0.142 4.142 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.031 0.969 33 H 0.036 0.964 34 H -0.020 1.020 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.402 0.598 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.681 -18.216 -2.539 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.156 4.156 3 C -0.044 4.044 4 N -0.227 5.227 5 C 0.038 3.962 6 C -0.540 4.540 7 H 0.100 0.900 8 C -0.132 4.132 9 N -0.540 5.540 10 Si 0.698 3.302 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.097 4.097 15 C 0.293 3.707 16 O -0.344 6.344 17 N -0.341 5.341 18 C 0.057 3.943 19 C -0.070 4.070 20 C -0.169 4.169 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.133 4.133 24 C -0.090 4.090 25 C -0.074 4.074 26 C -0.200 4.200 27 C -0.199 4.199 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.049 0.951 33 H 0.054 0.946 34 H -0.002 1.002 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.238 0.762 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.930 -17.896 -1.329 22.717 hybrid contribution 1.504 0.696 -0.996 1.934 sum 15.434 -17.200 -2.325 23.226 Atomic orbital electron populations 1.23748 0.95974 1.01459 1.01758 1.22874 0.95974 0.97994 0.98773 1.21261 0.95994 0.96457 0.90653 1.61637 1.11586 1.12671 1.36798 1.20265 0.98061 0.83353 0.94498 1.20965 0.95585 0.94582 1.42843 0.90033 1.24853 0.96121 0.97214 0.94986 1.69888 1.29241 1.09759 1.45065 0.86927 0.85632 0.79695 0.77904 1.20458 1.21133 1.19160 1.21952 0.94642 0.99932 0.93161 1.20947 0.79658 0.77486 0.92598 1.90783 1.61775 1.48472 1.33342 1.43625 1.23515 1.59267 1.07715 1.17250 0.96859 0.91818 0.88360 1.19958 0.96742 0.95427 0.94847 1.20894 1.02395 0.91638 1.01959 1.20892 0.99308 0.97131 0.95925 1.21038 1.00962 0.92706 0.99558 1.20710 0.99893 0.98827 0.93821 1.19766 1.00659 0.92541 0.96045 1.20034 0.96608 0.93411 0.97313 1.21861 0.96660 1.00104 1.01359 1.21822 0.99678 0.98218 1.00182 0.88278 0.89213 0.88598 0.88036 0.95134 0.94577 1.00215 0.92745 0.92748 0.88815 0.76189 0.89146 0.92251 0.92305 0.85961 0.86224 0.86186 0.90556 0.92452 0.92652 0.92450 0.92340 0.92508 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 14.32 29.01 0.42 -2.51 16 2 C -0.14 -2.19 9.33 -36.03 -0.34 -2.53 16 3 C 0.08 1.55 5.24 -4.98 -0.03 1.52 16 4 N -0.50 -10.44 3.94 -238.97 -0.94 -11.38 16 5 C 0.16 4.00 3.43 -4.98 -0.02 3.98 16 6 C -0.50 -14.45 8.79 -34.44 -0.30 -14.75 16 7 H 0.08 2.57 7.55 -52.49 -0.40 2.18 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 10 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 14 C 0.04 0.56 5.30 -4.98 -0.03 0.54 16 15 C 0.51 8.65 5.58 -10.99 -0.06 8.59 16 16 O -0.47 -10.43 12.80 5.55 0.07 -10.36 16 17 N -0.69 -9.14 3.88 -9.86 -0.04 -9.18 16 18 C 0.15 2.12 5.80 -83.69 -0.49 1.63 16 19 C -0.07 -1.03 5.49 -104.43 -0.57 -1.60 16 20 C -0.11 -1.89 8.28 36.01 0.30 -1.59 16 21 C -0.11 -1.50 9.72 -39.61 -0.39 -1.88 16 22 C -0.12 -1.40 10.04 -39.55 -0.40 -1.80 16 23 C -0.11 -1.25 8.71 -39.61 -0.35 -1.59 16 24 C -0.09 -1.04 4.80 -104.43 -0.50 -1.54 16 25 C -0.06 -0.52 3.04 -91.77 -0.28 -0.80 16 26 C -0.14 -1.07 9.01 37.16 0.33 -0.73 16 27 C -0.14 -1.31 9.01 37.16 0.33 -0.98 16 28 H 0.10 1.59 7.84 -52.49 -0.41 1.18 16 29 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.10 1.34 7.28 -52.49 -0.38 0.96 16 31 H 0.10 2.17 6.23 -51.93 -0.32 1.84 16 32 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 33 H 0.04 0.93 5.95 -51.93 -0.31 0.62 16 34 H -0.02 -0.47 7.55 -51.93 -0.39 -0.86 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.05 0.78 8.00 -51.93 -0.42 0.37 16 37 H 0.09 1.21 6.81 -51.93 -0.35 0.86 16 38 H 0.40 3.89 8.17 -40.82 -0.33 3.56 16 39 H 0.09 1.81 7.14 -51.93 -0.37 1.44 16 40 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 41 H 0.06 1.02 6.29 -51.93 -0.33 0.69 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.05 7.10 -52.49 -0.37 0.67 16 45 H 0.08 0.72 6.50 -51.93 -0.34 0.38 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.41 7.39 -51.93 -0.38 0.02 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 LS Contribution 402.52 15.07 6.07 6.07 Total: -1.00 -34.14 402.52 -9.65 -43.79 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.46 Total: 5.22 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.45 Total: -14.10 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.21 Total: -47.75 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.14 -9.65 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292368859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.923 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds