Wall clock time and date at job start Tue Mar 31 2020 15:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99934 * 2 1 4 4 N 1.46895 * 109.47132 * 124.51914 * 3 2 1 5 5 C 1.46897 * 110.99994 * 199.67574 * 4 3 2 6 6 C 1.50701 * 109.47414 * 66.04466 * 5 4 3 7 7 H 1.08002 * 119.99918 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99939 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99686 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00178 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47083 * 89.99927 * 10 8 6 12 12 H 1.48502 * 109.47414 * 209.99969 * 10 8 6 13 13 H 1.48500 * 109.47200 * 330.00086 * 10 8 6 14 14 C 1.46902 * 111.00379 * 75.71757 * 4 3 2 15 15 C 1.50692 * 109.47441 * 199.80355 * 14 4 3 16 16 O 1.21284 * 120.00365 * 5.29184 * 15 14 4 17 17 N 1.34780 * 119.99914 * 185.56846 * 15 14 4 18 18 C 1.39924 * 120.00062 * 175.64972 * 17 15 14 19 19 C 1.38890 * 120.07107 * 306.11505 * 18 17 15 20 20 C 1.50702 * 120.03566 * 359.97438 * 19 18 17 21 21 C 1.38101 * 119.92792 * 179.70024 * 19 18 17 22 22 C 1.38302 * 120.06640 * 0.57163 * 21 19 18 23 23 C 1.38257 * 120.14594 * 359.72232 * 22 21 19 24 24 C 1.38131 * 120.06898 * 359.97438 * 23 22 21 25 25 C 1.50706 * 120.03761 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.46976 * 300.02430 * 25 24 23 27 27 C 1.52996 * 109.46891 * 60.02660 * 25 24 23 28 28 H 1.07997 * 119.99913 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00033 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99913 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46959 * 4.51695 * 3 2 1 32 32 H 1.09001 * 109.47143 * 244.51824 * 3 2 1 33 33 H 1.08998 * 109.47208 * 186.04616 * 5 4 3 34 34 H 1.08999 * 109.46881 * 306.04505 * 5 4 3 35 35 H 0.97002 * 120.00184 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46509 * 79.79991 * 14 4 3 37 37 H 1.08998 * 109.46955 * 319.80697 * 14 4 3 38 38 H 0.96997 * 119.99935 * 355.65623 * 17 15 14 39 39 H 1.09003 * 109.46525 * 96.94177 * 20 19 18 40 40 H 1.09001 * 109.46875 * 216.93672 * 20 19 18 41 41 H 1.08990 * 109.47119 * 336.94181 * 20 19 18 42 42 H 1.08001 * 119.96216 * 180.27032 * 21 19 18 43 43 H 1.07998 * 119.92429 * 179.70652 * 22 21 19 44 44 H 1.07997 * 119.97081 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.47179 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.46910 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47092 * 300.00105 * 26 25 24 48 48 H 1.09005 * 109.46941 * 59.99753 * 26 25 24 49 49 H 1.08996 * 109.47499 * 59.99807 * 27 25 24 50 50 H 1.08999 * 109.47312 * 180.02562 * 27 25 24 51 51 H 1.09005 * 109.46939 * 300.00193 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9880 1.3368 1.1411 5 6 3.3873 2.7147 1.4570 6 6 2.1882 3.4857 1.9456 7 1 1.2256 3.0008 2.0141 8 6 2.3198 4.8106 2.3041 9 7 1.2733 5.4836 2.7300 10 14 3.9842 5.6499 2.1836 11 1 4.1361 6.2569 0.8367 12 1 4.0798 6.7109 3.2183 13 1 5.0600 4.6493 2.3998 14 6 4.1636 0.4924 0.8899 15 6 4.8277 0.1535 2.1994 16 8 4.3151 0.4923 3.2451 17 7 5.9944 -0.5213 2.2085 18 6 6.6571 -0.7566 3.4182 19 6 6.9564 0.3026 4.2653 20 6 6.5682 1.7075 3.8825 21 6 7.6050 0.0662 5.4613 22 6 7.9671 -1.2221 5.8105 23 6 7.6760 -2.2779 4.9667 24 6 7.0218 -2.0489 3.7718 25 6 6.7055 -3.2003 2.8523 26 6 8.0050 -3.8921 2.4355 27 6 5.8053 -4.2012 3.5794 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3579 2.1320 0.0809 32 1 2.6281 1.3987 -0.9277 33 1 4.1523 2.7023 2.2334 34 1 3.7859 3.1917 0.5617 35 1 1.3659 6.4156 2.9826 36 1 4.8672 1.0294 0.2538 37 1 3.8517 -0.4258 0.3923 38 1 6.3746 -0.8438 1.3765 39 1 5.6257 1.9680 4.3642 40 1 7.3452 2.4001 4.2061 41 1 6.4529 1.7705 2.8005 42 1 7.8342 0.8889 6.1225 43 1 8.4785 -1.4037 6.7442 44 1 7.9596 -3.2829 5.2423 45 1 6.1922 -2.8271 1.9661 46 1 7.7761 -4.7250 1.7708 47 1 8.6462 -3.1790 1.9175 48 1 8.5183 -4.2652 3.3217 49 1 4.8796 -3.7083 3.8764 50 1 5.5768 -5.0341 2.9146 51 1 6.3186 -4.5743 4.4657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292368859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:56 Heat of formation + Delta-G solvation = -5.167271 kcal Electronic energy + Delta-G solvation = -29283.378833 eV Core-core repulsion = 25568.416087 eV Total energy + Delta-G solvation = -3714.962747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.82230 -39.96256 -38.25400 -36.57245 -35.63903 -34.91994 -34.03111 -32.77702 -30.98577 -29.90894 -28.43019 -27.94926 -27.61968 -25.68826 -24.12601 -23.39801 -22.27968 -21.31822 -20.51316 -20.34008 -19.09022 -18.64321 -18.12302 -17.26159 -16.66358 -16.46426 -16.18869 -15.92044 -15.62705 -15.23913 -15.09432 -14.87033 -14.79044 -14.64855 -14.54618 -14.30862 -14.09724 -14.01167 -13.57602 -13.30330 -13.20834 -13.06877 -12.96076 -12.82343 -12.65421 -12.55500 -12.44211 -12.33050 -11.97774 -11.87296 -11.77442 -11.67951 -11.52722 -11.45399 -10.93464 -10.78358 -10.66995 -10.25215 -9.49013 -9.20352 -8.99277 -8.28787 -6.29981 0.34804 0.43605 1.27267 1.31752 1.41605 1.44311 1.73107 2.11148 2.31894 2.80415 3.04629 3.32814 3.66271 3.83830 3.85666 4.03305 4.05219 4.21991 4.27693 4.30055 4.33480 4.34623 4.39383 4.43823 4.53196 4.57524 4.63797 4.67323 4.72722 4.73575 4.84725 4.95860 4.98163 5.02923 5.03455 5.05391 5.10673 5.16359 5.26032 5.31635 5.42515 5.50533 5.55661 5.57887 5.65144 5.68703 5.74400 5.92274 6.03382 6.14411 6.30212 6.48046 6.66654 6.74844 7.31834 7.37359 8.88434 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.004081 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.106357 B = 6858.998930 C = 8678.055075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.143 4.143 3 C 0.085 3.915 4 N -0.528 5.528 5 C 0.180 3.820 6 C -0.507 4.507 7 H 0.035 0.965 8 C 0.008 3.992 9 N -0.949 5.949 10 Si 0.941 3.059 11 H -0.260 1.260 12 H -0.283 1.283 13 H -0.255 1.255 14 C 0.035 3.965 15 C 0.508 3.492 16 O -0.534 6.534 17 N -0.670 5.670 18 C 0.127 3.873 19 C -0.097 4.097 20 C -0.103 4.103 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.087 4.087 25 C -0.055 4.055 26 C -0.137 4.137 27 C -0.140 4.140 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.023 0.977 34 H -0.010 1.010 35 H 0.265 0.735 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.421 0.579 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.130 0.870 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.031 0.969 50 H 0.073 0.927 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.904 -21.251 -3.638 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.161 4.161 3 C -0.041 4.041 4 N -0.252 5.252 5 C 0.053 3.947 6 C -0.545 4.545 7 H 0.053 0.947 8 C -0.189 4.189 9 N -0.590 5.590 10 Si 0.765 3.235 11 H -0.184 1.184 12 H -0.209 1.209 13 H -0.179 1.179 14 C -0.096 4.096 15 C 0.295 3.705 16 O -0.408 6.408 17 N -0.321 5.321 18 C 0.034 3.966 19 C -0.099 4.099 20 C -0.159 4.159 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.089 4.089 25 C -0.073 4.073 26 C -0.194 4.194 27 C -0.197 4.197 28 H 0.097 0.903 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.007 0.993 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.150 0.850 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.148 0.852 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.092 0.908 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.190 -20.978 -2.478 27.235 hybrid contribution 0.441 1.516 -0.607 1.692 sum 17.631 -19.462 -3.085 26.442 Atomic orbital electron populations 1.23918 0.96118 1.01978 1.00956 1.22914 0.96103 0.97702 0.99410 1.21188 0.95337 0.96650 0.90966 1.61407 1.14102 1.10978 1.38713 1.19889 0.95346 0.85375 0.94061 1.21209 0.95529 0.95158 1.42596 0.94693 1.25784 1.00430 0.98036 0.94602 1.70051 1.31919 1.10308 1.46737 0.85807 0.80449 0.78548 0.78739 1.18431 1.20850 1.17936 1.22090 0.93472 1.00824 0.93203 1.21175 0.80192 0.76955 0.92156 1.90776 1.63675 1.51123 1.35199 1.43334 1.22189 1.57917 1.08646 1.17478 0.97748 0.92656 0.88732 1.20017 0.98684 0.94745 0.96444 1.20707 1.00745 0.93711 1.00777 1.21102 0.99445 0.98598 0.95469 1.21400 1.00045 0.91835 1.00559 1.21110 0.98710 1.00122 0.93118 1.20079 0.99727 0.92276 0.96779 1.20102 0.97809 0.92699 0.96726 1.21823 0.95329 1.00331 1.01954 1.21815 0.98485 0.98424 1.01009 0.90292 0.86246 0.85543 0.92306 0.92598 0.95945 0.99274 0.92563 0.90271 0.84956 0.74004 0.93310 0.90920 0.93375 0.85202 0.83333 0.83312 0.90617 0.91007 0.92631 0.91777 0.94944 0.90808 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.77 14.32 67.78 0.97 -4.80 16 2 C -0.14 -4.38 9.33 25.65 0.24 -4.14 16 3 C 0.09 3.17 5.24 85.56 0.45 3.62 16 4 N -0.53 -22.03 3.94 -909.97 -3.59 -25.61 16 5 C 0.18 8.98 3.43 85.56 0.29 9.28 16 6 C -0.51 -30.76 8.79 25.60 0.22 -30.53 16 7 H 0.03 2.38 7.55 -2.91 -0.02 2.36 16 8 C 0.01 0.51 5.47 84.66 0.46 0.97 16 9 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 10 Si 0.94 46.11 27.47 68.60 1.88 47.99 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.26 -11.93 6.54 99.48 0.65 -11.28 16 14 C 0.04 1.06 5.30 85.55 0.45 1.52 16 15 C 0.51 17.12 5.58 87.65 0.49 17.60 16 16 O -0.53 -24.30 12.80 -3.04 -0.04 -24.34 16 17 N -0.67 -16.87 3.88 -303.51 -1.18 -18.05 16 18 C 0.13 3.46 5.80 38.15 0.22 3.68 16 19 C -0.10 -2.96 5.49 -19.74 -0.11 -3.06 16 20 C -0.10 -3.58 8.28 71.24 0.59 -2.99 16 21 C -0.13 -3.25 9.72 22.25 0.22 -3.04 16 22 C -0.12 -2.42 10.04 22.29 0.22 -2.19 16 23 C -0.11 -2.12 8.71 22.25 0.19 -1.93 16 24 C -0.09 -1.86 4.80 -19.74 -0.09 -1.95 16 25 C -0.05 -0.87 3.04 -11.54 -0.04 -0.91 16 26 C -0.14 -1.51 9.01 71.98 0.65 -0.86 16 27 C -0.14 -2.21 9.01 71.98 0.65 -1.56 16 28 H 0.08 2.66 7.84 -2.91 -0.02 2.64 16 29 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.13 3.11 7.28 -2.91 -0.02 3.09 16 31 H 0.06 2.66 6.23 -2.38 -0.01 2.64 16 32 H 0.06 1.75 8.00 -2.39 -0.02 1.73 16 33 H 0.02 1.19 5.95 -2.39 -0.01 1.17 16 34 H -0.01 -0.49 7.55 -2.39 -0.02 -0.50 16 35 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 36 H 0.08 2.04 8.00 -2.39 -0.02 2.02 16 37 H 0.13 2.94 6.81 -2.39 -0.02 2.92 16 38 H 0.42 7.11 8.17 -92.71 -0.76 6.35 16 39 H 0.05 2.09 7.14 -2.39 -0.02 2.07 16 40 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 41 H 0.05 1.70 6.29 -2.39 -0.02 1.69 16 42 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.15 1.93 7.10 -2.91 -0.02 1.91 16 45 H 0.08 1.20 6.50 -2.39 -0.02 1.18 16 46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 0.63 7.39 -2.38 -0.02 0.62 16 49 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.07 0.90 7.39 -2.38 -0.02 0.88 16 Total: -1.00 -80.86 402.52 3.56 -77.30 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.10 Total: 25.44 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 6.08 Total: -21.30 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.47 Total: -105.09 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.04 Total: -24.34 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -80.86 3.56 -77.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292368859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.132 kcal (2) G-P(sol) polarization free energy of solvation -80.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds