Wall clock time and date at job start Tue Mar 31 2020 16:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53121 * 109.52602 * 2 1 4 4 C 1.53166 * 109.20909 * 177.56496 * 3 2 1 5 5 N 1.46850 * 109.55591 * 300.85637 * 4 3 2 6 6 C 1.46902 * 110.99995 * 185.84341 * 5 4 3 7 7 C 1.50698 * 109.47358 * 45.79156 * 6 5 4 8 8 C 1.38285 * 119.92877 * 269.72580 * 7 6 5 9 9 C 1.38108 * 120.06829 * 179.76604 * 8 7 6 10 10 C 1.38865 * 119.93023 * 0.50723 * 9 8 7 11 11 N 1.39928 * 120.07431 * 179.72426 * 10 9 8 12 12 C 1.34769 * 120.00245 * 213.31344 * 11 10 9 13 13 O 1.21283 * 120.00499 * 5.27415 * 12 11 10 14 14 C 1.50706 * 119.99901 * 185.27015 * 12 11 10 15 15 C 1.53004 * 109.46836 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46836 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99727 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99652 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00144 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.46829 * 90.00045 * 20 18 16 22 22 H 1.48503 * 109.46811 * 209.99753 * 20 18 16 23 23 H 1.48494 * 109.47215 * 330.00168 * 20 18 16 24 24 C 1.38871 * 119.86038 * 359.74669 * 10 9 8 25 25 C 1.38115 * 119.92986 * 359.97438 * 24 10 9 26 26 C 1.46847 * 111.19542 * 61.74590 * 5 4 3 27 27 C 1.53033 * 109.52359 * 298.25793 * 26 5 4 28 28 H 1.09000 * 109.46729 * 300.12962 * 1 2 3 29 29 H 1.09001 * 109.47157 * 60.11943 * 1 2 3 30 30 H 1.08996 * 109.47132 * 180.12884 * 1 2 3 31 31 H 1.09001 * 109.51999 * 239.87712 * 2 1 3 32 32 H 1.09008 * 109.49983 * 297.56867 * 3 2 1 33 33 H 1.09005 * 109.50385 * 57.68191 * 3 2 1 34 34 H 1.09002 * 109.44501 * 180.83466 * 4 3 2 35 35 H 1.08992 * 109.44283 * 60.88393 * 4 3 2 36 36 H 1.08994 * 109.46934 * 165.79597 * 6 5 4 37 37 H 1.09000 * 109.46564 * 285.79368 * 6 5 4 38 38 H 1.08002 * 119.96605 * 0.02562 * 8 7 6 39 39 H 1.08003 * 120.03348 * 180.25882 * 9 8 7 40 40 H 0.97003 * 120.00011 * 33.31013 * 11 10 9 41 41 H 1.08997 * 109.47394 * 300.00146 * 14 12 11 42 42 H 1.09004 * 109.46831 * 60.00412 * 14 12 11 43 43 H 1.08997 * 109.47458 * 300.00364 * 15 14 12 44 44 H 1.09004 * 109.46864 * 60.00689 * 15 14 12 45 45 H 0.96999 * 119.99647 * 180.02562 * 19 18 16 46 46 H 1.08003 * 120.03911 * 179.97438 * 24 10 9 47 47 H 1.07995 * 119.96609 * 180.02562 * 25 24 10 48 48 H 1.09002 * 109.46331 * 178.24417 * 26 5 4 49 49 H 1.09000 * 109.45253 * 58.26420 * 26 5 4 50 50 H 1.09007 * 109.50265 * 299.23689 * 27 26 5 51 51 H 1.08998 * 109.50529 * 179.12456 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4431 0.0000 4 6 3.5722 1.4351 0.0615 5 7 4.0116 0.7398 1.2779 6 6 5.4686 0.8332 1.4405 7 6 5.9119 2.2520 1.1923 8 6 6.2660 2.6510 -0.0835 9 6 6.6680 3.9518 -0.3152 10 6 6.7264 4.8566 0.7366 11 7 7.1388 6.1738 0.5063 12 6 7.8259 6.8404 1.4549 13 8 8.1700 6.2698 2.4683 14 6 8.1668 8.2949 1.2563 15 6 8.9425 8.8074 2.4716 16 6 9.2839 10.2617 2.2727 17 1 8.9779 10.7697 1.3701 18 6 9.9869 10.9436 3.2431 19 7 10.2844 12.2130 3.0698 20 14 10.5168 10.0647 4.8040 21 1 11.8608 9.4658 4.6028 22 1 10.5709 11.0368 5.9253 23 1 9.5403 8.9930 5.1244 24 6 6.3752 4.4514 2.0176 25 6 5.9685 3.1507 2.2417 26 6 3.5709 -0.6610 1.2774 27 6 2.0418 -0.7161 1.2529 28 1 -0.3633 0.5159 0.8888 29 1 -0.3633 0.5120 -0.8911 30 1 -0.3633 -1.0276 0.0023 31 1 1.8942 -0.5156 -0.8886 32 1 1.7152 1.9450 -0.9109 33 1 1.6457 1.9698 0.8683 34 1 3.9401 2.4610 0.0766 35 1 3.9677 0.9204 -0.8141 36 1 5.7406 0.5397 2.4544 37 1 5.9571 0.1698 0.7268 38 1 6.2242 1.9457 -0.9004 39 1 6.9404 4.2639 -1.3126 40 1 6.9302 6.6071 -0.3361 41 1 8.7786 8.4058 0.3611 42 1 7.2485 8.8710 1.1425 43 1 8.3303 8.6965 3.3665 44 1 9.8608 8.2313 2.5857 45 1 10.7794 12.6926 3.7524 46 1 6.4200 5.1527 2.8378 47 1 5.6948 2.8351 3.2376 48 1 3.9379 -1.1576 2.1756 49 1 3.9666 -1.1657 0.3959 50 1 1.6457 -0.2234 2.1410 51 1 1.7152 -1.7559 1.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292558249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:01 Heat of formation + Delta-G solvation = -27.750241 kcal Electronic energy + Delta-G solvation = -27435.438708 eV Core-core repulsion = 23719.496690 eV Total energy + Delta-G solvation = -3715.942018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53156 -39.65573 -38.30867 -35.56138 -34.20416 -33.56200 -31.56924 -31.23827 -30.96923 -30.46281 -28.23981 -26.35049 -24.89509 -23.55179 -22.98683 -22.42666 -21.50304 -20.69076 -19.98436 -19.72570 -17.67844 -17.19211 -16.41161 -16.17579 -15.91200 -15.53167 -15.03172 -14.85983 -14.77667 -14.40940 -14.30755 -14.10369 -13.98485 -13.53658 -13.36604 -13.28073 -13.13741 -12.71279 -12.61328 -12.55007 -12.23812 -12.18369 -12.05895 -11.58240 -11.50226 -11.39630 -11.18703 -11.00926 -10.98335 -10.64662 -10.56024 -10.22939 -10.16469 -10.09522 -9.82032 -9.36636 -9.22599 -8.91720 -8.62131 -8.53837 -7.96562 -6.05922 -4.05223 1.20103 1.38000 2.91028 3.25676 3.35971 3.42827 3.52905 3.54202 3.94462 4.37046 4.44284 4.44973 4.48173 4.59869 4.72001 4.90461 4.94693 5.01827 5.03982 5.07338 5.18050 5.20384 5.29098 5.29424 5.30719 5.34015 5.36626 5.44365 5.51463 5.59643 5.64285 5.68048 5.69846 5.78589 5.83263 5.85269 5.95326 5.99338 6.00955 6.08961 6.20544 6.35758 6.51520 6.59010 6.61668 6.77983 6.82515 7.05168 7.30164 7.36917 7.56020 7.74392 8.40023 8.50371 8.96459 9.56748 11.06760 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.001894 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.776436 B =14777.140312 C =14974.223337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.112 4.112 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.100 3.900 7 C -0.111 4.111 8 C -0.095 4.095 9 C -0.154 4.154 10 C 0.161 3.839 11 N -0.685 5.685 12 C 0.509 3.491 13 O -0.518 6.518 14 C -0.121 4.121 15 C 0.001 3.999 16 C -0.527 4.527 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.902 5.902 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.124 4.124 25 C -0.077 4.077 26 C 0.055 3.945 27 C -0.111 4.111 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.029 0.971 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.410 0.590 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.264 0.736 46 H 0.136 0.864 47 H 0.125 0.875 48 H 0.074 0.926 49 H 0.031 0.969 50 H 0.072 0.928 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 -27.752 -9.354 34.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.150 4.150 4 C -0.077 4.077 5 N -0.256 5.256 6 C -0.027 4.027 7 C -0.113 4.113 8 C -0.114 4.114 9 C -0.174 4.174 10 C 0.066 3.934 11 N -0.331 5.331 12 C 0.299 3.701 13 O -0.392 6.392 14 C -0.161 4.161 15 C -0.037 4.037 16 C -0.565 4.565 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.541 5.541 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.144 4.144 25 C -0.096 4.096 26 C -0.073 4.073 27 C -0.149 4.149 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.246 0.754 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.154 0.846 47 H 0.143 0.857 48 H 0.092 0.908 49 H 0.049 0.951 50 H 0.090 0.910 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.488 -27.694 -8.101 33.740 hybrid contribution 0.706 -0.488 -0.409 0.951 sum -16.782 -28.182 -8.510 33.886 Atomic orbital electron populations 1.21811 0.95125 1.01531 1.01886 1.21197 0.95634 0.96446 0.98086 1.21686 0.94850 0.96224 1.02214 1.22242 0.95444 0.99957 0.90009 1.62042 1.11626 1.13773 1.38194 1.20996 0.87158 0.92869 1.01702 1.19581 1.02538 0.95589 0.93559 1.20744 0.99192 0.95307 0.96142 1.20822 1.04961 0.93094 0.98544 1.17872 0.96265 0.84903 0.94357 1.43926 1.56404 1.12153 1.20631 1.21805 0.75568 0.90414 0.82279 1.90673 1.51063 1.69474 1.27971 1.21717 1.02706 0.88074 1.03625 1.19389 0.95351 0.96504 0.92435 1.21085 1.36035 0.93397 1.05942 0.90877 1.24969 0.95242 0.94684 0.98292 1.69911 1.40172 1.08922 1.35066 0.86799 0.79792 0.79854 0.83127 1.20227 1.21388 1.18539 1.21235 0.99317 0.97168 0.96666 1.20873 0.97536 0.92429 0.98743 1.22093 0.95935 0.88659 1.00599 1.21640 0.94523 1.00134 0.98555 0.92532 0.92762 0.92860 0.91759 0.91686 0.91038 0.89640 0.95317 0.89892 0.94237 0.86406 0.85839 0.75449 0.89276 0.89104 0.95721 0.96180 0.92671 0.84601 0.85746 0.90754 0.95097 0.90972 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.20 37.16 0.34 -0.48 16 2 C -0.10 -0.61 2.78 -90.50 -0.25 -0.86 16 3 C -0.11 -0.83 5.39 -26.58 -0.14 -0.97 16 4 C 0.05 0.43 4.58 -3.77 -0.02 0.41 16 5 N -0.53 -4.58 4.80 -236.03 -1.13 -5.71 16 6 C 0.10 0.87 5.43 -4.98 -0.03 0.85 16 7 C -0.11 -1.18 4.12 -104.59 -0.43 -1.61 16 8 C -0.09 -0.95 7.80 -39.61 -0.31 -1.26 16 9 C -0.15 -1.69 9.96 -39.40 -0.39 -2.08 16 10 C 0.16 2.18 6.28 -83.70 -0.53 1.66 16 11 N -0.69 -9.26 5.34 -9.86 -0.05 -9.31 16 12 C 0.51 9.01 7.57 -10.99 -0.08 8.92 16 13 O -0.52 -11.08 13.67 5.55 0.08 -11.00 16 14 C -0.12 -2.26 5.64 -27.88 -0.16 -2.42 16 15 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 16 C -0.53 -14.88 9.66 -34.44 -0.33 -15.21 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 20 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 24 C -0.12 -1.79 8.66 -39.39 -0.34 -2.13 16 25 C -0.08 -0.94 9.69 -39.61 -0.38 -1.32 16 26 C 0.05 0.39 5.42 -3.84 -0.02 0.37 16 27 C -0.11 -0.71 5.38 -26.65 -0.14 -0.85 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.82 5.65 -51.93 -0.29 0.53 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.04 0.32 8.02 -51.93 -0.42 -0.09 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.41 4.09 8.82 -40.82 -0.36 3.73 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.02 0.63 7.16 -51.93 -0.37 0.25 16 44 H 0.02 0.51 7.52 -51.93 -0.39 0.11 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.14 2.26 6.41 -52.48 -0.34 1.92 16 47 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 48 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 49 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 50 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 51 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -33.04 400.33 -11.32 -44.36 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.94 Total: -0.05 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -3.41 Total: -15.10 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.41 Total: -42.01 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.04 -11.32 -44.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292558249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.611 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds