Wall clock time and date at job start Tue Mar 31 2020 16:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53121 * 109.52602 * 2 1 4 4 C 1.53166 * 109.20909 * 177.56496 * 3 2 1 5 5 N 1.46850 * 109.55591 * 300.85637 * 4 3 2 6 6 C 1.46902 * 110.99995 * 185.84341 * 5 4 3 7 7 C 1.50698 * 109.47358 * 45.79156 * 6 5 4 8 8 C 1.38285 * 119.92877 * 269.72580 * 7 6 5 9 9 C 1.38108 * 120.06829 * 179.76604 * 8 7 6 10 10 C 1.38865 * 119.93023 * 0.50723 * 9 8 7 11 11 N 1.39928 * 120.07431 * 179.72426 * 10 9 8 12 12 C 1.34769 * 120.00245 * 213.31344 * 11 10 9 13 13 O 1.21283 * 120.00499 * 5.27415 * 12 11 10 14 14 C 1.50706 * 119.99901 * 185.27015 * 12 11 10 15 15 C 1.53004 * 109.46836 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46836 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99727 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99652 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00144 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.46829 * 90.00045 * 20 18 16 22 22 H 1.48503 * 109.46811 * 209.99753 * 20 18 16 23 23 H 1.48494 * 109.47215 * 330.00168 * 20 18 16 24 24 C 1.38871 * 119.86038 * 359.74669 * 10 9 8 25 25 C 1.38115 * 119.92986 * 359.97438 * 24 10 9 26 26 C 1.46847 * 111.19542 * 61.74590 * 5 4 3 27 27 C 1.53033 * 109.52359 * 298.25793 * 26 5 4 28 28 H 1.09000 * 109.46729 * 300.12962 * 1 2 3 29 29 H 1.09001 * 109.47157 * 60.11943 * 1 2 3 30 30 H 1.08996 * 109.47132 * 180.12884 * 1 2 3 31 31 H 1.09001 * 109.51999 * 239.87712 * 2 1 3 32 32 H 1.09008 * 109.49983 * 297.56867 * 3 2 1 33 33 H 1.09005 * 109.50385 * 57.68191 * 3 2 1 34 34 H 1.09002 * 109.44501 * 180.83466 * 4 3 2 35 35 H 1.08992 * 109.44283 * 60.88393 * 4 3 2 36 36 H 1.08994 * 109.46934 * 165.79597 * 6 5 4 37 37 H 1.09000 * 109.46564 * 285.79368 * 6 5 4 38 38 H 1.08002 * 119.96605 * 0.02562 * 8 7 6 39 39 H 1.08003 * 120.03348 * 180.25882 * 9 8 7 40 40 H 0.97003 * 120.00011 * 33.31013 * 11 10 9 41 41 H 1.08997 * 109.47394 * 300.00146 * 14 12 11 42 42 H 1.09004 * 109.46831 * 60.00412 * 14 12 11 43 43 H 1.08997 * 109.47458 * 300.00364 * 15 14 12 44 44 H 1.09004 * 109.46864 * 60.00689 * 15 14 12 45 45 H 0.96999 * 119.99647 * 180.02562 * 19 18 16 46 46 H 1.08003 * 120.03911 * 179.97438 * 24 10 9 47 47 H 1.07995 * 119.96609 * 180.02562 * 25 24 10 48 48 H 1.09002 * 109.46331 * 178.24417 * 26 5 4 49 49 H 1.09000 * 109.45253 * 58.26420 * 26 5 4 50 50 H 1.09007 * 109.50265 * 299.23689 * 27 26 5 51 51 H 1.08998 * 109.50529 * 179.12456 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4431 0.0000 4 6 3.5722 1.4351 0.0615 5 7 4.0116 0.7398 1.2779 6 6 5.4686 0.8332 1.4405 7 6 5.9119 2.2520 1.1923 8 6 6.2660 2.6510 -0.0835 9 6 6.6680 3.9518 -0.3152 10 6 6.7264 4.8566 0.7366 11 7 7.1388 6.1738 0.5063 12 6 7.8259 6.8404 1.4549 13 8 8.1700 6.2698 2.4683 14 6 8.1668 8.2949 1.2563 15 6 8.9425 8.8074 2.4716 16 6 9.2839 10.2617 2.2727 17 1 8.9779 10.7697 1.3701 18 6 9.9869 10.9436 3.2431 19 7 10.2844 12.2130 3.0698 20 14 10.5168 10.0647 4.8040 21 1 11.8608 9.4658 4.6028 22 1 10.5709 11.0368 5.9253 23 1 9.5403 8.9930 5.1244 24 6 6.3752 4.4514 2.0176 25 6 5.9685 3.1507 2.2417 26 6 3.5709 -0.6610 1.2774 27 6 2.0418 -0.7161 1.2529 28 1 -0.3633 0.5159 0.8888 29 1 -0.3633 0.5120 -0.8911 30 1 -0.3633 -1.0276 0.0023 31 1 1.8942 -0.5156 -0.8886 32 1 1.7152 1.9450 -0.9109 33 1 1.6457 1.9698 0.8683 34 1 3.9401 2.4610 0.0766 35 1 3.9677 0.9204 -0.8141 36 1 5.7406 0.5397 2.4544 37 1 5.9571 0.1698 0.7268 38 1 6.2242 1.9457 -0.9004 39 1 6.9404 4.2639 -1.3126 40 1 6.9302 6.6071 -0.3361 41 1 8.7786 8.4058 0.3611 42 1 7.2485 8.8710 1.1425 43 1 8.3303 8.6965 3.3665 44 1 9.8608 8.2313 2.5857 45 1 10.7794 12.6926 3.7524 46 1 6.4200 5.1527 2.8378 47 1 5.6948 2.8351 3.2376 48 1 3.9379 -1.1576 2.1756 49 1 3.9666 -1.1657 0.3959 50 1 1.6457 -0.2234 2.1410 51 1 1.7152 -1.7559 1.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292558249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:00 Heat of formation + Delta-G solvation = -47.662248 kcal Electronic energy + Delta-G solvation = -27436.302157 eV Core-core repulsion = 23719.496690 eV Total energy + Delta-G solvation = -3716.805467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62124 -40.50470 -39.24713 -36.47088 -35.56712 -35.11647 -33.39523 -32.02691 -31.81915 -31.32986 -29.09467 -27.91874 -25.79906 -24.23066 -24.00699 -23.43919 -22.61621 -21.72661 -21.16722 -20.49978 -19.27572 -18.61131 -17.73177 -17.06442 -16.87914 -16.57168 -16.28805 -15.97871 -15.54685 -15.40704 -15.37655 -15.09209 -14.90831 -14.67593 -14.56604 -14.37802 -14.26358 -14.04463 -13.67839 -13.44325 -13.24173 -12.98361 -12.90750 -12.80236 -12.66937 -12.26989 -12.14915 -12.09573 -12.01074 -11.99232 -11.78498 -11.52213 -11.41815 -11.35189 -11.15563 -11.04580 -10.79418 -10.77902 -9.85081 -9.28414 -8.93212 -8.32649 -6.35555 0.23366 0.46339 1.31924 1.34260 1.48703 1.59672 2.09096 2.33550 2.72172 3.03133 3.19440 3.75757 3.79202 3.90350 3.92005 3.94780 3.97572 4.07571 4.29490 4.34944 4.35874 4.44880 4.45469 4.47929 4.54217 4.60496 4.63048 4.71490 4.76802 4.81675 4.86807 4.87832 4.96007 4.98582 5.05869 5.09480 5.16600 5.26989 5.27522 5.30746 5.33066 5.35551 5.39180 5.41860 5.54412 5.56448 5.59995 5.67329 6.05621 6.15415 6.21665 6.23266 6.45226 6.70934 7.16491 7.29864 8.82850 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.001894 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.776436 B =14777.140312 C =14974.223337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.111 4.111 4 C 0.054 3.946 5 N -0.544 5.544 6 C 0.102 3.898 7 C -0.102 4.102 8 C -0.089 4.089 9 C -0.143 4.143 10 C 0.136 3.864 11 N -0.665 5.665 12 C 0.515 3.485 13 O -0.562 6.562 14 C -0.114 4.114 15 C 0.004 3.996 16 C -0.529 4.529 17 H 0.052 0.948 18 C 0.015 3.985 19 N -0.942 5.942 20 Si 0.937 3.063 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.147 4.147 25 C -0.087 4.087 26 C 0.055 3.945 27 C -0.108 4.108 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.428 0.572 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.010 0.990 44 H 0.009 0.991 45 H 0.267 0.733 46 H 0.105 0.895 47 H 0.127 0.873 48 H 0.079 0.921 49 H 0.037 0.963 50 H 0.060 0.940 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.405 -30.541 -10.947 37.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.148 4.148 4 C -0.074 4.074 5 N -0.269 5.269 6 C -0.025 4.025 7 C -0.104 4.104 8 C -0.108 4.108 9 C -0.163 4.163 10 C 0.041 3.959 11 N -0.311 5.311 12 C 0.304 3.696 13 O -0.440 6.440 14 C -0.154 4.154 15 C -0.034 4.034 16 C -0.567 4.567 17 H 0.071 0.929 18 C -0.183 4.183 19 N -0.582 5.582 20 Si 0.761 3.239 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.167 4.167 25 C -0.106 4.106 26 C -0.073 4.073 27 C -0.146 4.146 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.267 0.733 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.123 0.877 47 H 0.145 0.855 48 H 0.097 0.903 49 H 0.055 0.945 50 H 0.079 0.921 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.289 -30.498 -9.743 36.872 hybrid contribution 0.855 0.317 0.007 0.912 sum -17.434 -30.181 -9.736 36.189 Atomic orbital electron populations 1.21789 0.94599 1.02011 1.01757 1.21181 0.96069 0.95655 0.98209 1.21669 0.94377 0.96949 1.01852 1.22195 0.95898 0.99139 0.90179 1.62035 1.11396 1.14881 1.38565 1.20993 0.87521 0.91714 1.02281 1.19812 1.01089 0.96116 0.93335 1.21082 0.97718 0.95419 0.96598 1.21100 1.03508 0.92801 0.98892 1.18035 0.97897 0.85108 0.94838 1.43548 1.54954 1.12283 1.20342 1.21458 0.75764 0.89981 0.82350 1.90664 1.53245 1.70178 1.29890 1.21526 1.03083 0.89118 1.01658 1.19238 0.95429 0.94148 0.94580 1.21417 1.35138 0.95196 1.04969 0.92938 1.25784 0.95668 0.95350 1.01531 1.70021 1.41474 1.10348 1.36405 0.85856 0.79497 0.78798 0.79718 1.19416 1.20375 1.18638 1.21132 1.01317 0.97718 0.96552 1.20952 0.97913 0.92014 0.99712 1.22142 0.96281 0.87754 1.01107 1.21629 0.94114 1.00823 0.98056 0.93091 0.92491 0.92075 0.91314 0.91047 0.92513 0.91086 0.94534 0.89745 0.92873 0.83588 0.83080 0.73296 0.87279 0.87427 0.97137 0.97218 0.92376 0.87692 0.85467 0.90300 0.94473 0.92099 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 71.98 0.66 -0.72 16 2 C -0.09 -1.01 2.78 -10.71 -0.03 -1.04 16 3 C -0.11 -1.47 5.39 30.69 0.17 -1.31 16 4 C 0.05 0.78 4.58 86.37 0.40 1.18 16 5 N -0.54 -8.33 4.80 -900.68 -4.32 -12.65 16 6 C 0.10 1.56 5.43 85.56 0.46 2.02 16 7 C -0.10 -1.98 4.12 -19.84 -0.08 -2.06 16 8 C -0.09 -1.52 7.80 22.25 0.17 -1.35 16 9 C -0.14 -2.74 9.96 22.39 0.22 -2.52 16 10 C 0.14 3.54 6.28 38.15 0.24 3.78 16 11 N -0.66 -17.16 5.34 -303.51 -1.62 -18.78 16 12 C 0.51 18.07 7.57 87.66 0.66 18.73 16 13 O -0.56 -24.58 13.67 -3.04 -0.04 -24.62 16 14 C -0.11 -4.18 5.64 29.85 0.17 -4.01 16 15 C 0.00 0.20 3.33 29.85 0.10 0.30 16 16 C -0.53 -30.29 9.66 25.60 0.25 -30.04 16 17 H 0.05 3.15 7.99 -2.91 -0.02 3.12 16 18 C 0.01 0.86 5.47 84.65 0.46 1.32 16 19 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 20 Si 0.94 46.81 27.47 68.60 1.88 48.69 16 21 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.26 -13.04 6.54 99.48 0.65 -12.39 16 24 C -0.15 -4.35 8.66 22.39 0.19 -4.16 16 25 C -0.09 -2.12 9.69 22.25 0.22 -1.90 16 26 C 0.05 0.65 5.42 86.32 0.47 1.12 16 27 C -0.11 -1.19 5.38 30.65 0.16 -1.02 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 1.24 5.65 -2.39 -0.01 1.22 16 35 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 37 H 0.05 0.69 8.02 -2.39 -0.02 0.67 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.43 7.59 8.82 -92.71 -0.82 6.77 16 41 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 42 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 44 H 0.01 0.48 7.52 -2.39 -0.02 0.47 16 45 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.10 3.73 6.41 -2.91 -0.02 3.71 16 47 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 48 H 0.08 0.87 8.12 -2.39 -0.02 0.85 16 49 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 51 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -72.77 400.33 1.12 -71.65 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.02 Total: 15.88 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 4.90 Total: -21.66 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -5.65 Total: -89.95 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.04 Total: -24.62 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.88 Total: 48.69 kcal Total: -72.77 1.12 -71.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292558249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.992 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds