Wall clock time and date at job start Tue Mar 31 2020 16:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.46976 * 2 1 4 4 C 1.38237 * 119.99920 * 90.00397 * 3 2 1 5 5 C 1.38235 * 120.00031 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00153 * 359.95598 * 5 4 3 7 7 C 1.50695 * 120.00264 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.88569 * 357.56902 * 7 6 5 9 9 C 1.55163 * 111.00356 * 233.64905 * 7 6 5 10 10 C 1.54313 * 102.86043 * 206.22693 * 9 7 6 11 11 N 1.47019 * 107.27699 * 22.52581 * 10 9 7 12 12 C 1.34784 * 125.64840 * 180.96622 * 11 10 9 13 13 O 1.21579 * 120.00114 * 179.69265 * 12 11 10 14 14 N 1.34777 * 119.99908 * 359.68992 * 12 11 10 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47551 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47473 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47235 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00370 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99790 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99910 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46949 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46931 * 119.99831 * 22 20 18 25 25 H 1.48493 * 109.47546 * 240.00072 * 22 20 18 26 26 C 1.47426 * 108.70490 * 0.70329 * 11 10 9 27 27 C 1.38239 * 119.99834 * 0.27299 * 6 5 4 28 28 C 1.38234 * 120.00055 * 269.97697 * 3 2 1 29 29 H 1.09000 * 109.47373 * 299.99890 * 1 2 3 30 30 H 1.09004 * 109.47480 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.47552 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46951 * 239.99800 * 2 1 3 33 33 H 1.09005 * 109.46992 * 120.00039 * 2 1 3 34 34 H 1.07999 * 120.00368 * 359.97063 * 4 3 2 35 35 H 1.07999 * 120.00106 * 179.97438 * 5 4 3 36 36 H 1.09001 * 110.71814 * 324.78091 * 9 7 6 37 37 H 1.08999 * 110.72172 * 87.88255 * 9 7 6 38 38 H 1.09001 * 109.98925 * 263.04475 * 10 9 7 39 39 H 1.09008 * 109.77301 * 141.88207 * 10 9 7 40 40 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 41 41 H 1.09000 * 109.47024 * 300.00478 * 15 14 12 42 42 H 1.09004 * 109.46875 * 60.00324 * 15 14 12 43 43 H 1.09000 * 109.47250 * 300.00222 * 16 15 14 44 44 H 1.09004 * 109.46862 * 60.00198 * 16 15 14 45 45 H 1.09000 * 109.46870 * 300.00218 * 17 16 15 46 46 H 1.08996 * 109.47261 * 59.99829 * 17 16 15 47 47 H 0.97001 * 120.00657 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.36773 * 94.93788 * 26 11 10 49 49 H 1.09000 * 110.36333 * 217.15132 * 26 11 10 50 50 H 1.08000 * 120.00285 * 179.72836 * 27 6 5 51 51 H 1.07999 * 119.99950 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9557 4.0268 0.0001 7 6 3.4590 5.4472 0.0001 8 1 3.5475 5.8281 1.0175 9 6 2.5457 6.3609 -0.8593 10 6 3.5032 7.4888 -1.2978 11 7 4.8718 6.9592 -1.2081 12 6 5.9987 7.6431 -1.4894 13 8 7.0820 7.1034 -1.3743 14 7 5.9246 8.9252 -1.8983 15 6 7.1494 9.6688 -2.2034 16 6 6.7880 11.0896 -2.6409 17 6 8.0671 11.8659 -2.9602 18 6 7.7111 13.2656 -3.3904 19 1 6.6760 13.5711 -3.4316 20 6 8.7069 14.1565 -3.7305 21 7 9.9673 13.7848 -3.6799 22 14 8.2656 15.8913 -4.2646 23 1 6.7901 16.0572 -4.2378 24 1 8.8900 16.8687 -3.3371 25 1 8.7657 16.1275 -5.6426 26 6 4.8078 5.5583 -0.7536 27 6 2.7207 3.3767 -1.1971 28 6 2.2631 2.0723 -1.1971 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0824 1.5635 2.1325 35 1 2.9036 3.8847 2.1325 36 1 2.1613 5.8188 -1.7233 37 1 1.7270 6.7604 -0.2608 38 1 3.3942 8.3482 -0.6363 39 1 3.2847 7.7793 -2.3255 40 1 5.0603 9.3559 -1.9898 41 1 7.7793 9.7117 -1.3149 42 1 7.6884 9.1669 -3.0070 43 1 6.1579 11.0470 -3.5293 44 1 6.2492 11.5912 -1.8369 45 1 8.6975 11.9084 -2.0720 46 1 8.6055 11.3641 -3.7641 47 1 10.6679 14.4114 -3.9196 48 1 4.8220 4.8812 -1.6078 49 1 5.6384 5.3389 -0.0827 50 1 2.8975 3.8870 -2.1324 51 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292642961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:59 Heat of formation + Delta-G solvation = -32.352436 kcal Electronic energy + Delta-G solvation = -26724.686737 eV Core-core repulsion = 23008.545154 eV Total energy + Delta-G solvation = -3716.141584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60645 -39.65209 -37.74707 -35.32883 -34.77652 -33.30254 -32.17294 -31.28455 -30.92693 -29.92405 -28.26397 -26.58039 -24.59290 -23.51484 -23.20527 -22.60867 -21.69837 -20.58126 -20.30966 -19.64693 -17.99385 -17.19690 -16.43521 -16.08608 -15.81141 -15.62554 -15.34045 -14.89079 -14.47689 -14.30533 -14.18562 -14.02607 -13.93163 -13.81546 -13.60265 -13.44355 -13.02340 -12.85853 -12.57939 -12.41856 -12.27685 -11.84040 -11.77375 -11.68934 -11.65610 -11.47444 -11.32059 -11.11556 -10.93119 -10.90929 -10.70464 -10.55511 -10.07591 -9.84593 -9.43288 -9.25710 -9.09828 -8.92723 -8.83113 -8.45337 -8.36251 -6.00640 -4.03633 0.94728 1.06926 2.66726 3.30587 3.32818 3.37482 3.38059 3.41530 4.07699 4.14994 4.29913 4.38293 4.44979 4.49558 4.50884 4.66463 4.72829 4.80456 4.91038 4.98042 5.00529 5.08451 5.14775 5.24659 5.33677 5.35217 5.44221 5.45272 5.50024 5.58810 5.65101 5.65962 5.71273 5.73991 5.76917 5.82236 5.83884 6.06406 6.15686 6.20900 6.27039 6.29267 6.56018 6.64378 6.65746 6.86363 7.04147 7.13894 7.65687 7.78429 7.98449 8.11259 8.39450 8.76234 9.03288 9.60492 11.10690 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.040946 B = 0.001534 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.662491 B =18253.187815 C =18491.816232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.074 4.074 7 C -0.064 4.064 8 H 0.093 0.907 9 C -0.121 4.121 10 C 0.098 3.902 11 N -0.642 5.642 12 C 0.718 3.282 13 O -0.590 6.590 14 N -0.739 5.739 15 C 0.134 3.866 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.136 3.864 27 C -0.109 4.109 28 C -0.115 4.115 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.260 0.740 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.123 0.877 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.523 -26.616 9.078 36.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.127 4.127 6 C -0.075 4.075 7 C -0.083 4.083 8 H 0.112 0.888 9 C -0.158 4.158 10 C -0.025 4.025 11 N -0.382 5.382 12 C 0.420 3.580 13 O -0.468 6.468 14 N -0.393 5.393 15 C 0.011 3.989 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.013 3.987 27 C -0.127 4.127 28 C -0.133 4.133 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.227 0.773 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.141 0.859 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.422 -26.870 9.092 35.547 hybrid contribution -0.574 1.279 -0.366 1.449 sum -21.996 -25.591 8.726 34.855 Atomic orbital electron populations 1.21747 0.94690 1.01716 1.02236 1.20551 0.96200 0.92716 1.02874 1.19910 0.99129 0.96254 0.93248 1.21001 1.00095 0.94838 0.97531 1.21046 0.99370 0.94790 0.97511 1.19542 0.99741 0.94816 0.93366 1.21339 0.94726 0.91800 1.00407 0.88836 1.22731 0.97281 0.95769 1.00051 1.22002 0.81858 0.97244 1.01424 1.47562 1.04742 1.13462 1.72412 1.15518 0.82738 0.81404 0.78322 1.90922 1.26159 1.69287 1.60414 1.45393 1.10975 1.10998 1.71944 1.21527 0.84654 0.92189 1.00494 1.21887 1.01856 0.92073 0.99974 1.19035 0.91038 0.94175 0.97181 1.21243 0.92907 0.96775 1.45068 0.92605 1.25027 0.95014 0.98723 0.95684 1.69974 0.99148 1.35422 1.48693 0.86534 0.78502 0.84670 0.78262 1.19770 1.21017 1.21011 1.22068 0.96779 0.81884 0.98016 1.21014 0.99212 0.94741 0.97738 1.21011 0.99974 0.94799 0.97557 0.92564 0.92539 0.92412 0.91038 0.91071 0.86174 0.85976 0.90115 0.89722 0.91402 0.91388 0.77320 0.91932 0.91923 0.92791 0.92788 0.96217 0.96209 0.92992 0.91570 0.90251 0.85902 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.09 -0.44 6.06 -27.89 -0.17 -0.61 16 3 C -0.09 -0.59 5.13 -104.63 -0.54 -1.12 16 4 C -0.12 -0.80 9.70 -39.58 -0.38 -1.19 16 5 C -0.11 -0.79 9.69 -39.58 -0.38 -1.17 16 6 C -0.07 -0.56 5.00 -104.62 -0.52 -1.09 16 7 C -0.06 -0.49 3.26 -89.62 -0.29 -0.78 16 8 H 0.09 0.69 7.96 -51.93 -0.41 0.27 16 9 C -0.12 -0.78 6.35 -24.90 -0.16 -0.94 16 10 C 0.10 0.83 6.14 -3.07 -0.02 0.81 16 11 N -0.64 -7.91 3.33 -176.24 -0.59 -8.50 16 12 C 0.72 11.93 8.49 -86.91 -0.74 11.19 16 13 O -0.59 -12.32 16.60 5.30 0.09 -12.23 16 14 N -0.74 -11.50 5.52 -65.23 -0.36 -11.86 16 15 C 0.13 2.49 5.67 -4.05 -0.02 2.46 16 16 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 17 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 18 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.14 1.45 6.33 -2.53 -0.02 1.43 16 27 C -0.11 -0.82 8.29 -39.58 -0.33 -1.14 16 28 C -0.12 -0.82 9.70 -39.58 -0.38 -1.20 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.12 0.72 7.99 -52.49 -0.42 0.30 16 36 H 0.08 0.49 6.75 -51.93 -0.35 0.14 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.39 5.02 7.46 -40.82 -0.30 4.72 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.07 0.70 7.08 -51.93 -0.37 0.33 16 49 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 50 H 0.12 0.83 7.01 -52.49 -0.37 0.46 16 51 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 412.43 15.07 6.22 6.22 Total: -1.00 -33.89 412.43 -12.15 -46.04 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.94 Total: -0.82 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -4.28 Total: -9.16 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.21 Total: -46.58 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.89 -12.15 -46.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292642961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.688 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds