Wall clock time and date at job start Tue Mar 31 2020 16:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.46976 * 2 1 4 4 C 1.38237 * 119.99920 * 90.00397 * 3 2 1 5 5 C 1.38235 * 120.00031 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00153 * 359.95598 * 5 4 3 7 7 C 1.50695 * 120.00264 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.88569 * 357.56902 * 7 6 5 9 9 C 1.55163 * 111.00356 * 233.64905 * 7 6 5 10 10 C 1.54313 * 102.86043 * 206.22693 * 9 7 6 11 11 N 1.47019 * 107.27699 * 22.52581 * 10 9 7 12 12 C 1.34784 * 125.64840 * 180.96622 * 11 10 9 13 13 O 1.21579 * 120.00114 * 179.69265 * 12 11 10 14 14 N 1.34777 * 119.99908 * 359.68992 * 12 11 10 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47551 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47473 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47235 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00370 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99790 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99910 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46949 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46931 * 119.99831 * 22 20 18 25 25 H 1.48493 * 109.47546 * 240.00072 * 22 20 18 26 26 C 1.47426 * 108.70490 * 0.70329 * 11 10 9 27 27 C 1.38239 * 119.99834 * 0.27299 * 6 5 4 28 28 C 1.38234 * 120.00055 * 269.97697 * 3 2 1 29 29 H 1.09000 * 109.47373 * 299.99890 * 1 2 3 30 30 H 1.09004 * 109.47480 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.47552 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46951 * 239.99800 * 2 1 3 33 33 H 1.09005 * 109.46992 * 120.00039 * 2 1 3 34 34 H 1.07999 * 120.00368 * 359.97063 * 4 3 2 35 35 H 1.07999 * 120.00106 * 179.97438 * 5 4 3 36 36 H 1.09001 * 110.71814 * 324.78091 * 9 7 6 37 37 H 1.08999 * 110.72172 * 87.88255 * 9 7 6 38 38 H 1.09001 * 109.98925 * 263.04475 * 10 9 7 39 39 H 1.09008 * 109.77301 * 141.88207 * 10 9 7 40 40 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 41 41 H 1.09000 * 109.47024 * 300.00478 * 15 14 12 42 42 H 1.09004 * 109.46875 * 60.00324 * 15 14 12 43 43 H 1.09000 * 109.47250 * 300.00222 * 16 15 14 44 44 H 1.09004 * 109.46862 * 60.00198 * 16 15 14 45 45 H 1.09000 * 109.46870 * 300.00218 * 17 16 15 46 46 H 1.08996 * 109.47261 * 59.99829 * 17 16 15 47 47 H 0.97001 * 120.00657 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.36773 * 94.93788 * 26 11 10 49 49 H 1.09000 * 110.36333 * 217.15132 * 26 11 10 50 50 H 1.08000 * 120.00285 * 179.72836 * 27 6 5 51 51 H 1.07999 * 119.99950 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9557 4.0268 0.0001 7 6 3.4590 5.4472 0.0001 8 1 3.5475 5.8281 1.0175 9 6 2.5457 6.3609 -0.8593 10 6 3.5032 7.4888 -1.2978 11 7 4.8718 6.9592 -1.2081 12 6 5.9987 7.6431 -1.4894 13 8 7.0820 7.1034 -1.3743 14 7 5.9246 8.9252 -1.8983 15 6 7.1494 9.6688 -2.2034 16 6 6.7880 11.0896 -2.6409 17 6 8.0671 11.8659 -2.9602 18 6 7.7111 13.2656 -3.3904 19 1 6.6760 13.5711 -3.4316 20 6 8.7069 14.1565 -3.7305 21 7 9.9673 13.7848 -3.6799 22 14 8.2656 15.8913 -4.2646 23 1 6.7901 16.0572 -4.2378 24 1 8.8900 16.8687 -3.3371 25 1 8.7657 16.1275 -5.6426 26 6 4.8078 5.5583 -0.7536 27 6 2.7207 3.3767 -1.1971 28 6 2.2631 2.0723 -1.1971 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0824 1.5635 2.1325 35 1 2.9036 3.8847 2.1325 36 1 2.1613 5.8188 -1.7233 37 1 1.7270 6.7604 -0.2608 38 1 3.3942 8.3482 -0.6363 39 1 3.2847 7.7793 -2.3255 40 1 5.0603 9.3559 -1.9898 41 1 7.7793 9.7117 -1.3149 42 1 7.6884 9.1669 -3.0070 43 1 6.1579 11.0470 -3.5293 44 1 6.2492 11.5912 -1.8369 45 1 8.6975 11.9084 -2.0720 46 1 8.6055 11.3641 -3.7641 47 1 10.6679 14.4114 -3.9196 48 1 4.8220 4.8812 -1.6078 49 1 5.6384 5.3389 -0.0827 50 1 2.8975 3.8870 -2.1324 51 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292642961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:58 Heat of formation + Delta-G solvation = -50.561809 kcal Electronic energy + Delta-G solvation = -26725.476355 eV Core-core repulsion = 23008.545154 eV Total energy + Delta-G solvation = -3716.931202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51491 -40.46836 -38.65484 -36.93734 -35.42967 -35.13052 -33.33429 -32.35879 -31.79409 -30.59181 -29.18052 -28.16992 -25.60564 -24.57732 -23.87326 -23.70444 -22.34977 -22.18464 -20.92258 -20.85380 -19.13490 -18.47920 -17.89551 -17.07340 -16.84718 -16.57034 -16.43034 -16.10082 -15.83974 -15.42567 -15.26402 -14.65600 -14.53917 -14.43384 -14.31267 -14.27867 -14.06714 -14.00496 -13.72245 -13.65807 -13.37948 -13.10829 -12.96193 -12.77082 -12.55360 -12.34388 -12.33297 -12.19834 -12.06870 -11.76316 -11.68347 -11.65487 -11.60827 -11.47264 -11.31297 -11.14146 -10.55548 -10.27495 -9.78593 -9.54532 -9.35982 -8.18784 -6.30330 0.41175 0.54342 1.42309 1.42529 1.53583 1.56410 2.06220 2.42450 2.80357 3.00896 3.15166 3.52820 3.72368 3.75705 3.93515 4.01523 4.15343 4.17463 4.21386 4.22552 4.25971 4.32970 4.42462 4.53651 4.54918 4.60685 4.63437 4.72849 4.73183 4.81636 4.87922 4.94330 4.95558 5.03996 5.08730 5.11006 5.15563 5.17103 5.17937 5.26843 5.30683 5.40121 5.44995 5.53803 5.56786 5.71029 5.74320 5.77681 5.84638 6.00473 6.15094 6.22997 6.86666 6.94035 7.39295 7.49374 8.93618 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.040946 B = 0.001534 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.662491 B =18253.187815 C =18491.816232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.091 4.091 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.051 4.051 8 H 0.098 0.902 9 C -0.110 4.110 10 C 0.090 3.910 11 N -0.637 5.637 12 C 0.712 3.288 13 O -0.641 6.641 14 N -0.727 5.727 15 C 0.149 3.851 16 C -0.099 4.099 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.131 3.869 27 C -0.117 4.117 28 C -0.126 4.126 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.410 0.590 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.068 0.932 45 H -0.008 1.008 46 H -0.008 1.008 47 H 0.263 0.737 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.127 0.873 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.691 -26.411 9.249 37.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.144 4.144 5 C -0.135 4.135 6 C -0.084 4.084 7 C -0.070 4.070 8 H 0.117 0.883 9 C -0.148 4.148 10 C -0.031 4.031 11 N -0.375 5.375 12 C 0.414 3.586 13 O -0.523 6.523 14 N -0.383 5.383 15 C 0.025 3.975 16 C -0.137 4.137 17 C -0.015 4.015 18 C -0.578 4.578 19 H 0.086 0.914 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.181 1.181 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.008 3.992 27 C -0.135 4.135 28 C -0.144 4.144 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.247 0.753 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.011 0.989 46 H 0.011 0.989 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.145 0.855 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.680 -26.677 9.271 37.506 hybrid contribution 0.406 1.111 -0.398 1.248 sum -24.274 -25.565 8.873 36.353 Atomic orbital electron populations 1.21725 0.94217 1.02280 1.01912 1.20586 0.96545 0.91779 1.03393 1.20173 0.98694 0.97071 0.93200 1.21243 0.99953 0.94905 0.98253 1.21256 0.99238 0.95099 0.97905 1.19554 1.00372 0.94775 0.93666 1.21223 0.92964 0.92405 1.00374 0.88338 1.22739 0.96976 0.94699 1.00375 1.22321 0.79785 0.98367 1.02665 1.47576 1.05196 1.13890 1.70831 1.15686 0.83161 0.81493 0.78265 1.90883 1.28572 1.70353 1.62531 1.45028 1.10702 1.10749 1.71776 1.21105 0.85579 0.91663 0.99184 1.21583 0.99085 0.91952 1.01089 1.18950 0.93125 0.94428 0.94981 1.21706 0.93539 0.97750 1.44790 0.91441 1.26023 0.94815 1.03560 0.95665 1.70120 1.00431 1.37195 1.49819 0.85358 0.78988 0.78740 0.77692 1.18107 1.20618 1.20617 1.22191 0.98010 0.80994 0.97992 1.21142 0.99335 0.95080 0.97943 1.21225 1.00047 0.94885 0.98274 0.92796 0.92927 0.91423 0.90640 0.90461 0.84797 0.84872 0.89363 0.87518 0.90139 0.90201 0.75322 0.93530 0.93548 0.91318 0.91291 0.98919 0.98921 0.92838 0.91610 0.92444 0.85493 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.89 71.98 0.71 -0.39 16 2 C -0.09 -0.75 6.06 29.85 0.18 -0.57 16 3 C -0.09 -1.14 5.13 -19.87 -0.10 -1.24 16 4 C -0.13 -1.56 9.70 22.27 0.22 -1.35 16 5 C -0.12 -1.54 9.69 22.27 0.22 -1.32 16 6 C -0.08 -1.16 5.00 -19.87 -0.10 -1.26 16 7 C -0.05 -0.69 3.26 -10.15 -0.03 -0.73 16 8 H 0.10 1.27 7.96 -2.39 -0.02 1.25 16 9 C -0.11 -1.13 6.35 31.78 0.20 -0.92 16 10 C 0.09 1.30 6.14 86.73 0.53 1.83 16 11 N -0.64 -15.16 3.33 -829.77 -2.76 -17.92 16 12 C 0.71 23.70 8.49 179.05 1.52 25.22 16 13 O -0.64 -27.74 16.60 -3.96 -0.07 -27.81 16 14 N -0.73 -22.11 5.52 -478.55 -2.64 -24.75 16 15 C 0.15 5.59 5.67 86.38 0.49 6.08 16 16 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 17 C 0.02 1.21 4.97 29.85 0.15 1.36 16 18 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 19 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 20 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 21 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 22 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.13 2.77 6.33 86.85 0.55 3.31 16 27 C -0.12 -1.62 8.29 22.27 0.18 -1.43 16 28 C -0.13 -1.66 9.70 22.27 0.22 -1.44 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 33 H 0.08 0.58 8.09 -2.38 -0.02 0.56 16 34 H 0.13 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.13 1.36 7.99 -2.91 -0.02 1.34 16 36 H 0.09 0.81 6.75 -2.39 -0.02 0.80 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.41 9.60 7.46 -92.71 -0.69 8.91 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 45 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 47 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.07 1.39 7.08 -2.38 -0.02 1.37 16 49 H 0.06 1.46 8.03 -2.39 -0.02 1.44 16 50 H 0.13 1.57 7.01 -2.91 -0.02 1.54 16 51 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -74.82 412.43 2.84 -71.98 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.20 Total: 16.12 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.79 Total: -6.34 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -5.12 Total: -99.89 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.07 Total: -27.81 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -74.82 2.84 -71.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292642961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.420 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds