Wall clock time and date at job start Tue Mar 31 2020 15:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31698 * 119.72071 * 2 1 4 4 C 1.31927 * 121.88385 * 180.27235 * 3 2 1 5 5 C 1.50694 * 119.46381 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.50166 * 163.59933 * 5 4 3 7 7 C 1.52997 * 60.00522 * 252.51559 * 6 5 4 8 8 C 1.38354 * 121.07878 * 0.02562 * 4 3 2 9 9 C 1.38359 * 119.30127 * 359.97438 * 8 4 3 10 10 C 1.39525 * 119.71852 * 180.27647 * 2 1 3 11 11 C 1.47843 * 120.55090 * 359.74586 * 10 2 1 12 12 O 1.21552 * 120.00179 * 305.04607 * 11 10 2 13 13 N 1.34780 * 119.99982 * 125.05643 * 11 10 2 14 14 C 1.46500 * 119.99583 * 4.53413 * 13 11 10 15 15 C 1.50706 * 109.46980 * 95.91939 * 14 13 11 16 16 H 1.07992 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99826 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00462 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99915 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47495 * 89.99491 * 19 17 15 21 21 H 1.48501 * 109.47563 * 210.00105 * 19 17 15 22 22 H 1.48509 * 109.46986 * 329.99956 * 19 17 15 23 23 C 1.46495 * 119.99926 * 184.54363 * 13 11 10 24 24 C 1.52998 * 109.47552 * 89.99964 * 23 13 11 25 25 C 1.53003 * 109.47151 * 179.97438 * 24 23 13 26 26 C 1.52994 * 109.47224 * 64.99786 * 25 24 23 27 27 C 1.52997 * 109.46944 * 184.99337 * 25 24 23 28 28 H 1.09003 * 109.47092 * 264.39985 * 1 2 3 29 29 H 1.09003 * 109.46617 * 24.39723 * 1 2 3 30 30 H 1.08995 * 109.47057 * 144.39309 * 1 2 3 31 31 H 1.08999 * 115.55087 * 309.31739 * 5 4 3 32 32 H 1.09005 * 117.49801 * 0.02562 * 6 5 4 33 33 H 1.09002 * 117.49703 * 145.02254 * 6 5 4 34 34 H 1.08999 * 117.49800 * 252.51074 * 7 6 5 35 35 H 1.08994 * 117.51591 * 107.48044 * 7 6 5 36 36 H 1.07995 * 120.35085 * 180.02562 * 8 4 3 37 37 H 1.08001 * 120.85441 * 180.02562 * 9 8 4 38 38 H 1.09005 * 109.46931 * 215.91296 * 14 13 11 39 39 H 1.09003 * 109.47700 * 335.91351 * 14 13 11 40 40 H 0.96993 * 120.00579 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.46374 * 209.99462 * 23 13 11 42 42 H 1.08996 * 109.47550 * 329.99073 * 23 13 11 43 43 H 1.09004 * 109.46742 * 299.99730 * 24 23 13 44 44 H 1.08996 * 109.47420 * 59.99030 * 24 23 13 45 45 H 1.08999 * 109.47026 * 304.99453 * 25 24 23 46 46 H 1.08998 * 109.47301 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.46823 * 299.99707 * 26 25 24 48 48 H 1.09006 * 109.47623 * 59.99570 * 26 25 24 49 49 H 1.09008 * 109.47050 * 59.99803 * 27 25 24 50 50 H 1.09002 * 109.47268 * 179.97438 * 27 25 24 51 51 H 1.08998 * 109.47244 * 300.00458 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1935 -0.0053 5 6 4.1694 2.5326 -0.0044 6 6 5.6518 2.5622 0.3727 7 6 4.6037 3.1025 1.3475 8 6 4.2366 0.0364 -0.0117 9 6 3.5987 -1.1913 -0.0120 10 6 2.1986 -1.2117 -0.0058 11 6 1.4655 -2.4955 -0.0064 12 8 0.6425 -2.7258 0.8580 13 7 1.7098 -3.4107 -0.9652 14 6 2.7707 -3.1765 -1.9480 15 6 4.0328 -3.8669 -1.4989 16 1 4.0436 -4.4239 -0.5738 17 6 5.1739 -3.7863 -2.2686 18 7 5.1608 -3.1075 -3.3949 19 14 6.7384 -4.6414 -1.7116 20 1 6.7681 -6.0229 -2.2554 21 1 7.9180 -3.8884 -2.2084 22 1 6.7731 -4.6928 -0.2278 23 6 0.9143 -4.6394 -1.0247 24 6 -0.3106 -4.4116 -1.9128 25 6 -1.1410 -5.6952 -1.9754 26 6 -1.7007 -6.0088 -0.5864 27 6 -2.2966 -5.5074 -2.9603 28 1 -0.3633 -0.1003 1.0228 29 1 -0.3633 0.9360 -0.4245 30 1 -0.3633 -0.8355 -0.5983 31 1 3.8282 3.2383 -0.7619 32 1 6.1274 1.6130 0.6198 33 1 6.2863 3.2874 -0.1369 34 1 4.5486 4.1831 1.4793 35 1 4.3892 2.5090 2.2362 36 1 5.3152 0.0909 -0.0156 37 1 4.1660 -2.1103 -0.0165 38 1 2.4638 -3.5738 -2.9155 39 1 2.9540 -2.1056 -2.0366 40 1 5.9637 -3.0506 -3.9362 41 1 1.5201 -5.4445 -1.4409 42 1 0.5895 -4.9111 -0.0204 43 1 -0.9163 -3.6065 -1.4967 44 1 0.0142 -4.1400 -2.9171 45 1 -0.5106 -6.5199 -2.3078 46 1 -2.2918 -6.9234 -0.6309 47 1 -0.8773 -6.1426 0.1153 48 1 -2.3311 -5.1840 -0.2539 49 1 -1.8978 -5.2839 -3.9499 50 1 -2.8879 -6.4220 -3.0053 51 1 -2.9269 -4.6826 -2.6279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294576013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:03 Heat of formation + Delta-G solvation = -0.358601 kcal Electronic energy + Delta-G solvation = -29191.104326 eV Core-core repulsion = 25476.350099 eV Total energy + Delta-G solvation = -3714.754227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.41607 -38.85505 -36.95281 -36.40044 -34.88424 -32.66916 -32.41770 -31.81959 -29.21550 -27.45015 -27.05694 -26.96516 -24.98971 -23.24553 -22.77691 -22.61851 -21.62995 -20.50945 -19.77362 -18.78802 -16.80596 -16.67437 -16.45962 -15.83408 -15.60611 -14.99919 -14.82152 -14.58111 -14.39357 -13.91166 -13.82508 -13.50416 -13.29268 -13.19790 -12.73860 -12.54028 -12.44506 -12.23217 -12.10311 -11.96770 -11.88964 -11.63373 -11.54794 -11.41735 -11.33223 -11.07662 -11.00019 -10.87894 -10.73263 -10.52663 -10.50776 -10.39833 -10.30488 -10.07961 -9.81848 -9.47060 -9.17789 -8.86274 -8.65406 -8.30482 -7.77113 -6.27579 -4.36138 1.26634 1.76616 3.14922 3.23240 3.24319 3.31675 3.69263 3.87866 4.16025 4.24046 4.37502 4.85966 4.96276 5.02376 5.03225 5.05322 5.11249 5.12763 5.23896 5.28591 5.35449 5.53094 5.64227 5.65329 5.72054 5.80709 5.82447 5.88692 5.91638 5.94741 5.95068 5.99238 6.01361 6.04723 6.10416 6.11615 6.15199 6.25092 6.33116 6.36526 6.39451 6.59987 6.64328 6.67015 6.72857 6.77191 7.08858 7.14775 7.47549 7.65731 7.95472 8.23664 8.35506 8.68561 8.90664 9.31160 10.78351 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.004710 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.588921 B = 5942.999950 C = 8456.286354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.166 3.834 3 N -0.491 5.491 4 C 0.166 3.834 5 C -0.102 4.102 6 C -0.174 4.174 7 C -0.164 4.164 8 C -0.182 4.182 9 C -0.013 4.013 10 C -0.173 4.173 11 C 0.565 3.435 12 O -0.562 6.562 13 N -0.587 5.587 14 C 0.233 3.767 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.070 3.930 18 N -0.882 5.882 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.119 3.881 24 C -0.128 4.128 25 C -0.094 4.094 26 C -0.147 4.147 27 C -0.145 4.145 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.166 0.834 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.267 0.733 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.050 0.950 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 4.371 3.527 7.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.028 3.972 3 N -0.200 5.200 4 C 0.029 3.971 5 C -0.121 4.121 6 C -0.211 4.211 7 C -0.202 4.202 8 C -0.202 4.202 9 C -0.039 4.039 10 C -0.178 4.178 11 C 0.352 3.648 12 O -0.444 6.444 13 N -0.315 5.315 14 C 0.113 3.887 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.520 5.520 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.004 4.004 24 C -0.166 4.166 25 C -0.113 4.113 26 C -0.204 4.204 27 C -0.202 4.202 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.183 0.817 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.099 5.057 3.776 8.777 hybrid contribution 1.648 -1.290 -0.101 2.096 sum -4.450 3.767 3.676 6.892 Atomic orbital electron populations 1.20654 0.88693 1.02667 1.03317 1.21138 0.96602 0.86744 0.92750 1.67153 1.09174 1.28679 1.15040 1.20314 0.89142 0.93383 0.94272 1.20724 0.96105 0.95104 1.00164 1.23095 0.91229 1.03469 1.03312 1.22940 1.03031 1.00858 0.93335 1.21834 1.01402 0.92407 1.04512 1.22395 0.93183 1.00030 0.88257 1.20725 0.95028 0.94710 1.07302 1.18045 0.81771 0.83482 0.81482 1.90682 1.36473 1.79428 1.37768 1.48174 1.34887 1.18192 1.30287 1.19542 0.83991 0.98101 0.87055 1.21448 0.95052 1.33700 1.07957 0.91909 1.24934 0.98904 0.94974 0.94667 1.69921 1.29384 1.39874 1.12787 0.86593 0.82539 0.79815 0.79200 1.20371 1.20921 1.19632 1.21387 0.91542 0.87124 1.00379 1.21994 0.96679 0.97334 1.00606 1.21044 0.96564 0.98014 0.95643 1.21878 1.01003 1.00834 0.96724 1.21822 0.98096 1.01199 0.99089 0.90028 0.90931 0.91004 0.86289 0.88075 0.88182 0.88418 0.88781 0.84728 0.81667 0.94755 0.94026 0.92367 0.90322 0.90610 0.92062 0.91796 0.91154 0.93298 0.92251 0.92755 0.92780 0.93056 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.16 36.00 0.33 -1.24 16 2 C 0.17 3.16 6.82 -82.17 -0.56 2.60 16 3 N -0.49 -9.05 10.17 -5.42 -0.06 -9.11 16 4 C 0.17 2.85 6.46 -82.51 -0.53 2.31 16 5 C -0.10 -1.38 6.21 -91.77 -0.57 -1.95 16 6 C -0.17 -1.93 9.79 -26.73 -0.26 -2.20 16 7 C -0.16 -1.84 10.23 -26.73 -0.27 -2.12 16 8 C -0.18 -3.23 9.34 -39.49 -0.37 -3.60 16 9 C -0.01 -0.26 7.85 -38.87 -0.31 -0.57 16 10 C -0.17 -3.53 4.69 -104.82 -0.49 -4.02 16 11 C 0.57 11.98 6.13 -12.33 -0.08 11.90 16 12 O -0.56 -12.53 15.80 5.32 0.08 -12.44 16 13 N -0.59 -12.20 2.46 -176.17 -0.43 -12.63 16 14 C 0.23 5.41 4.68 -5.19 -0.02 5.38 16 15 C -0.54 -13.34 7.12 -34.44 -0.25 -13.59 16 16 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 17 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.88 -23.35 13.29 55.43 0.74 -22.61 16 19 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 C 0.12 2.15 5.21 -4.05 -0.02 2.12 16 24 C -0.13 -1.99 5.01 -26.73 -0.13 -2.12 16 25 C -0.09 -1.20 2.92 -90.62 -0.26 -1.47 16 26 C -0.15 -1.81 8.95 37.15 0.33 -1.48 16 27 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.20 7.19 -51.93 -0.37 0.82 16 31 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.10 1.14 6.38 -51.93 -0.33 0.81 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.13 2.11 6.23 -52.49 -0.33 1.78 16 37 H 0.17 3.56 5.61 -52.49 -0.29 3.27 16 38 H 0.03 0.85 8.12 -51.93 -0.42 0.42 16 39 H 0.04 1.03 5.70 -51.93 -0.30 0.74 16 40 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 42 H 0.08 1.38 5.79 -51.93 -0.30 1.08 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 50 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 407.59 15.07 6.14 6.14 Total: -1.00 -27.82 407.59 -10.34 -38.16 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.57 Total: 7.60 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.22 Total: -9.67 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.25 Total: -44.35 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.44 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -27.82 -10.34 -38.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294576013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.798 kcal (2) G-P(sol) polarization free energy of solvation -27.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds