Wall clock time and date at job start Tue Mar 31 2020 15:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31698 * 119.72071 * 2 1 4 4 C 1.31927 * 121.88385 * 180.27235 * 3 2 1 5 5 C 1.50694 * 119.46381 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.50166 * 163.59933 * 5 4 3 7 7 C 1.52997 * 60.00522 * 252.51559 * 6 5 4 8 8 C 1.38354 * 121.07878 * 0.02562 * 4 3 2 9 9 C 1.38359 * 119.30127 * 359.97438 * 8 4 3 10 10 C 1.39525 * 119.71852 * 180.27647 * 2 1 3 11 11 C 1.47843 * 120.55090 * 359.74586 * 10 2 1 12 12 O 1.21552 * 120.00179 * 305.04607 * 11 10 2 13 13 N 1.34780 * 119.99982 * 125.05643 * 11 10 2 14 14 C 1.46500 * 119.99583 * 4.53413 * 13 11 10 15 15 C 1.50706 * 109.46980 * 95.91939 * 14 13 11 16 16 H 1.07992 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99826 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00462 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99915 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47495 * 89.99491 * 19 17 15 21 21 H 1.48501 * 109.47563 * 210.00105 * 19 17 15 22 22 H 1.48509 * 109.46986 * 329.99956 * 19 17 15 23 23 C 1.46495 * 119.99926 * 184.54363 * 13 11 10 24 24 C 1.52998 * 109.47552 * 89.99964 * 23 13 11 25 25 C 1.53003 * 109.47151 * 179.97438 * 24 23 13 26 26 C 1.52994 * 109.47224 * 64.99786 * 25 24 23 27 27 C 1.52997 * 109.46944 * 184.99337 * 25 24 23 28 28 H 1.09003 * 109.47092 * 264.39985 * 1 2 3 29 29 H 1.09003 * 109.46617 * 24.39723 * 1 2 3 30 30 H 1.08995 * 109.47057 * 144.39309 * 1 2 3 31 31 H 1.08999 * 115.55087 * 309.31739 * 5 4 3 32 32 H 1.09005 * 117.49801 * 0.02562 * 6 5 4 33 33 H 1.09002 * 117.49703 * 145.02254 * 6 5 4 34 34 H 1.08999 * 117.49800 * 252.51074 * 7 6 5 35 35 H 1.08994 * 117.51591 * 107.48044 * 7 6 5 36 36 H 1.07995 * 120.35085 * 180.02562 * 8 4 3 37 37 H 1.08001 * 120.85441 * 180.02562 * 9 8 4 38 38 H 1.09005 * 109.46931 * 215.91296 * 14 13 11 39 39 H 1.09003 * 109.47700 * 335.91351 * 14 13 11 40 40 H 0.96993 * 120.00579 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.46374 * 209.99462 * 23 13 11 42 42 H 1.08996 * 109.47550 * 329.99073 * 23 13 11 43 43 H 1.09004 * 109.46742 * 299.99730 * 24 23 13 44 44 H 1.08996 * 109.47420 * 59.99030 * 24 23 13 45 45 H 1.08999 * 109.47026 * 304.99453 * 25 24 23 46 46 H 1.08998 * 109.47301 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.46823 * 299.99707 * 26 25 24 48 48 H 1.09006 * 109.47623 * 59.99570 * 26 25 24 49 49 H 1.09008 * 109.47050 * 59.99803 * 27 25 24 50 50 H 1.09002 * 109.47268 * 179.97438 * 27 25 24 51 51 H 1.08998 * 109.47244 * 300.00458 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1935 -0.0053 5 6 4.1694 2.5326 -0.0044 6 6 5.6518 2.5622 0.3727 7 6 4.6037 3.1025 1.3475 8 6 4.2366 0.0364 -0.0117 9 6 3.5987 -1.1913 -0.0120 10 6 2.1986 -1.2117 -0.0058 11 6 1.4655 -2.4955 -0.0064 12 8 0.6425 -2.7258 0.8580 13 7 1.7098 -3.4107 -0.9652 14 6 2.7707 -3.1765 -1.9480 15 6 4.0328 -3.8669 -1.4989 16 1 4.0436 -4.4239 -0.5738 17 6 5.1739 -3.7863 -2.2686 18 7 5.1608 -3.1075 -3.3949 19 14 6.7384 -4.6414 -1.7116 20 1 6.7681 -6.0229 -2.2554 21 1 7.9180 -3.8884 -2.2084 22 1 6.7731 -4.6928 -0.2278 23 6 0.9143 -4.6394 -1.0247 24 6 -0.3106 -4.4116 -1.9128 25 6 -1.1410 -5.6952 -1.9754 26 6 -1.7007 -6.0088 -0.5864 27 6 -2.2966 -5.5074 -2.9603 28 1 -0.3633 -0.1003 1.0228 29 1 -0.3633 0.9360 -0.4245 30 1 -0.3633 -0.8355 -0.5983 31 1 3.8282 3.2383 -0.7619 32 1 6.1274 1.6130 0.6198 33 1 6.2863 3.2874 -0.1369 34 1 4.5486 4.1831 1.4793 35 1 4.3892 2.5090 2.2362 36 1 5.3152 0.0909 -0.0156 37 1 4.1660 -2.1103 -0.0165 38 1 2.4638 -3.5738 -2.9155 39 1 2.9540 -2.1056 -2.0366 40 1 5.9637 -3.0506 -3.9362 41 1 1.5201 -5.4445 -1.4409 42 1 0.5895 -4.9111 -0.0204 43 1 -0.9163 -3.6065 -1.4967 44 1 0.0142 -4.1400 -2.9171 45 1 -0.5106 -6.5199 -2.3078 46 1 -2.2918 -6.9234 -0.6309 47 1 -0.8773 -6.1426 0.1153 48 1 -2.3311 -5.1840 -0.2539 49 1 -1.8978 -5.2839 -3.9499 50 1 -2.8879 -6.4220 -3.0053 51 1 -2.9269 -4.6826 -2.6279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294576013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:02 Heat of formation + Delta-G solvation = -12.125069 kcal Electronic energy + Delta-G solvation = -29191.614558 eV Core-core repulsion = 25476.350099 eV Total energy + Delta-G solvation = -3715.264459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90885 -40.37913 -38.08294 -37.66677 -36.52053 -34.52758 -33.87656 -33.22287 -30.66446 -29.12665 -28.51837 -27.99991 -26.33602 -25.03817 -24.23557 -23.73095 -22.83269 -21.75755 -20.90356 -20.37491 -18.65414 -18.23296 -17.99456 -17.19058 -17.17306 -16.41459 -16.20253 -15.91165 -15.82236 -15.25013 -15.22615 -14.87174 -14.52476 -14.50118 -14.32044 -14.23208 -13.79502 -13.61637 -13.42712 -13.32437 -13.15073 -13.10446 -12.85903 -12.75140 -12.69245 -12.63365 -12.31306 -12.24145 -12.11217 -11.96088 -11.61249 -11.55151 -11.53656 -11.42676 -11.36284 -11.08307 -10.73996 -10.55367 -10.37423 -9.73762 -9.49386 -8.22646 -6.37659 -0.19792 0.26350 1.39397 1.42664 1.50924 1.66673 2.17815 2.39195 2.63361 2.85495 3.06527 3.16494 3.57292 3.68975 3.85075 3.93227 3.95444 3.97582 4.01990 4.07074 4.14927 4.25985 4.32910 4.49905 4.55439 4.60064 4.62146 4.68254 4.69622 4.75142 4.79370 4.80818 4.88186 4.92500 4.95771 5.02620 5.04983 5.11038 5.12206 5.13480 5.16794 5.18626 5.26838 5.30753 5.32075 5.47068 5.50224 5.61201 5.66455 5.78726 6.00614 6.47081 6.74624 6.90424 7.18114 7.34572 8.82964 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.004710 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.588921 B = 5942.999950 C = 8456.286354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.160 3.840 3 N -0.498 5.498 4 C 0.171 3.829 5 C -0.128 4.128 6 C -0.161 4.161 7 C -0.150 4.150 8 C -0.187 4.187 9 C -0.027 4.027 10 C -0.199 4.199 11 C 0.565 3.435 12 O -0.577 6.577 13 N -0.589 5.589 14 C 0.253 3.747 15 C -0.544 4.544 16 H 0.055 0.945 17 C 0.031 3.969 18 N -0.912 5.912 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.268 1.268 23 C 0.117 3.883 24 C -0.117 4.117 25 C -0.091 4.091 26 C -0.144 4.144 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.016 0.984 39 H 0.025 0.975 40 H 0.269 0.731 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.049 0.951 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 5.119 3.884 8.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.021 3.979 3 N -0.208 5.208 4 C 0.033 3.967 5 C -0.146 4.146 6 C -0.199 4.199 7 C -0.188 4.188 8 C -0.206 4.206 9 C -0.052 4.052 10 C -0.204 4.204 11 C 0.353 3.647 12 O -0.460 6.460 13 N -0.318 5.318 14 C 0.132 3.868 15 C -0.583 4.583 16 H 0.073 0.927 17 C -0.170 4.170 18 N -0.551 5.551 19 Si 0.775 3.225 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.193 1.193 23 C -0.006 4.006 24 C -0.155 4.155 25 C -0.110 4.110 26 C -0.201 4.201 27 C -0.198 4.198 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.729 5.791 4.138 9.137 hybrid contribution 1.537 -1.472 -0.187 2.137 sum -4.192 4.320 3.951 7.200 Atomic orbital electron populations 1.20655 0.87096 1.03361 1.03628 1.21521 0.97834 0.86474 0.92061 1.67292 1.09911 1.28109 1.15442 1.20932 0.88838 0.94961 0.91938 1.20837 0.97869 0.93566 1.02353 1.23224 0.90121 1.03914 1.02596 1.23035 1.01813 1.02149 0.91773 1.22064 1.02486 0.91847 1.04215 1.22269 0.93193 1.00290 0.89473 1.20774 0.95312 0.94887 1.09430 1.18195 0.81551 0.83796 0.81113 1.90651 1.37255 1.79863 1.38203 1.48183 1.34726 1.19080 1.29764 1.19136 0.84293 0.96711 0.86673 1.21518 0.95739 1.33440 1.07557 0.92675 1.25569 1.01475 0.95403 0.94590 1.70015 1.30220 1.41053 1.13769 0.85677 0.79231 0.78759 0.78836 1.20143 1.20401 1.19288 1.21537 0.92111 0.86007 1.00901 1.21893 0.95759 0.98758 0.99132 1.21044 0.96868 0.96334 0.96722 1.21848 1.00731 1.01715 0.95842 1.21790 0.97486 1.02224 0.98345 0.89488 0.88905 0.91847 0.85399 0.88443 0.85781 0.85909 0.89602 0.82823 0.83644 0.96586 0.95714 0.92220 0.90652 0.90708 0.92974 0.92771 0.90767 0.91122 0.93437 0.93190 0.92893 0.91144 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.94 9.16 71.23 0.65 -2.29 16 2 C 0.16 6.13 6.82 42.89 0.29 6.42 16 3 N -0.50 -18.18 10.17 -171.06 -1.74 -19.92 16 4 C 0.17 5.74 6.46 42.57 0.28 6.01 16 5 C -0.13 -3.19 6.21 -11.54 -0.07 -3.26 16 6 C -0.16 -3.14 9.79 30.59 0.30 -2.84 16 7 C -0.15 -2.96 10.23 30.60 0.31 -2.65 16 8 C -0.19 -6.66 9.34 22.33 0.21 -6.45 16 9 C -0.03 -1.10 7.85 22.73 0.18 -0.92 16 10 C -0.20 -8.39 4.69 -19.99 -0.09 -8.49 16 11 C 0.57 24.84 6.13 86.79 0.53 25.37 16 12 O -0.58 -26.41 15.80 -3.88 -0.06 -26.47 16 13 N -0.59 -25.50 2.46 -829.56 -2.04 -27.54 16 14 C 0.25 12.22 4.68 85.63 0.40 12.62 16 15 C -0.54 -27.43 7.12 25.60 0.18 -27.25 16 16 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 17 C 0.03 1.58 5.46 84.65 0.46 2.05 16 18 N -0.91 -48.90 13.29 21.45 0.28 -48.61 16 19 Si 0.95 40.19 29.54 68.60 2.03 42.22 16 20 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C 0.12 4.35 5.21 86.38 0.45 4.80 16 24 C -0.12 -3.72 5.01 30.59 0.15 -3.57 16 25 C -0.09 -2.27 2.92 -10.80 -0.03 -2.30 16 26 C -0.14 -3.41 8.95 71.98 0.64 -2.77 16 27 C -0.14 -2.99 9.19 71.98 0.66 -2.32 16 28 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.06 2.15 7.19 -2.39 -0.02 2.14 16 31 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.10 1.98 6.38 -2.38 -0.02 1.97 16 33 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.15 4.73 6.23 -2.91 -0.02 4.72 16 37 H 0.15 6.56 5.61 -2.91 -0.02 6.54 16 38 H 0.02 0.83 8.12 -2.38 -0.02 0.81 16 39 H 0.02 1.29 5.70 -2.39 -0.01 1.28 16 40 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 41 H 0.08 2.82 8.07 -2.38 -0.02 2.80 16 42 H 0.07 2.80 5.79 -2.39 -0.01 2.79 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 1.22 6.57 -2.38 -0.02 1.21 16 48 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -60.19 407.59 4.89 -55.30 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.91 Total: 32.85 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.51 Total: -7.84 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.49 Total: -96.07 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.06 Total: -26.47 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -60.19 4.89 -55.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294576013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.180 kcal (2) G-P(sol) polarization free energy of solvation -60.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds