Wall clock time and date at job start Tue Mar 31 2020 15:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31699 * 119.71475 * 2 1 4 4 C 1.31923 * 121.87824 * 180.27245 * 3 2 1 5 5 C 1.50708 * 119.45879 * 180.02562 * 4 3 2 6 6 C 1.52992 * 117.49614 * 163.59836 * 5 4 3 7 7 C 1.53000 * 117.49481 * 94.97668 * 5 4 3 8 8 C 1.38349 * 121.08297 * 359.97438 * 4 3 2 9 9 C 1.38357 * 119.30098 * 0.02562 * 8 4 3 10 10 C 1.39522 * 119.71904 * 180.26949 * 2 1 3 11 11 C 1.47837 * 120.55609 * 359.74861 * 10 2 1 12 12 O 1.21555 * 119.99729 * 55.34521 * 11 10 2 13 13 N 1.34777 * 120.00063 * 235.34705 * 11 10 2 14 14 C 1.46501 * 119.99839 * 5.66180 * 13 11 10 15 15 C 1.50700 * 109.46760 * 90.00499 * 14 13 11 16 16 H 1.07995 * 120.00136 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99819 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99811 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47470 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47278 * 120.00264 * 19 17 15 22 22 H 1.48502 * 109.47270 * 239.99672 * 19 17 15 23 23 C 1.46501 * 119.99927 * 185.66656 * 13 11 10 24 24 C 1.53002 * 109.47145 * 89.92508 * 23 13 11 25 25 C 1.52998 * 109.47333 * 63.03531 * 24 23 13 26 26 C 1.52994 * 109.47146 * 183.03638 * 24 23 13 27 27 C 1.53001 * 109.46984 * 303.03481 * 24 23 13 28 28 H 1.08996 * 109.47569 * 264.14841 * 1 2 3 29 29 H 1.09000 * 109.46899 * 24.15322 * 1 2 3 30 30 H 1.09007 * 109.46593 * 144.14287 * 1 2 3 31 31 H 1.08997 * 115.54620 * 309.31029 * 5 4 3 32 32 H 1.09001 * 117.50234 * 0.02562 * 6 5 4 33 33 H 1.09003 * 117.49369 * 145.02247 * 6 5 4 34 34 H 1.09001 * 117.49881 * 214.97814 * 7 5 4 35 35 H 1.08999 * 117.50281 * 359.97438 * 7 5 4 36 36 H 1.07997 * 120.35247 * 180.02562 * 8 4 3 37 37 H 1.08003 * 120.85473 * 180.02562 * 9 8 4 38 38 H 1.08998 * 109.46868 * 210.00382 * 14 13 11 39 39 H 1.09000 * 109.47101 * 330.00255 * 14 13 11 40 40 H 0.97008 * 120.00070 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.46669 * 209.92267 * 23 13 11 42 42 H 1.08994 * 109.47310 * 329.92545 * 23 13 11 43 43 H 1.08997 * 109.47358 * 59.99570 * 25 24 23 44 44 H 1.09002 * 109.47581 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.47248 * 300.00355 * 25 24 23 46 46 H 1.09002 * 109.47483 * 59.99963 * 26 24 23 47 47 H 1.09004 * 109.47668 * 180.02562 * 26 24 23 48 48 H 1.09005 * 109.47131 * 299.99702 * 26 24 23 49 49 H 1.09000 * 109.46910 * 65.60702 * 27 24 23 50 50 H 1.09008 * 109.46790 * 185.60422 * 27 24 23 51 51 H 1.08997 * 109.47207 * 305.60408 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0053 5 6 4.1692 2.5329 -0.0044 6 6 5.6516 2.5625 0.3727 7 6 4.6034 3.1028 1.3475 8 6 4.2366 0.0366 -0.0107 9 6 3.5987 -1.1912 -0.0109 10 6 2.1987 -1.2117 -0.0057 11 6 1.4657 -2.4955 -0.0062 12 8 0.6412 -2.7243 -0.8696 13 7 1.7116 -3.4123 0.9508 14 6 2.6119 -3.0893 2.0604 15 6 1.8185 -2.4896 3.1927 16 1 0.7506 -2.3614 3.0952 17 6 2.4560 -2.1046 4.3530 18 7 3.7565 -2.2602 4.4714 19 14 1.4728 -1.3606 5.7561 20 1 0.0394 -1.2923 5.3745 21 1 1.6231 -2.2051 6.9684 22 1 1.9744 0.0078 6.0410 23 6 1.0786 -4.7316 0.8811 24 6 1.9762 -5.6870 0.0921 25 6 3.3037 -5.8669 0.8312 26 6 1.2813 -7.0430 -0.0455 27 6 2.2413 -5.1062 -1.2984 28 1 -0.3634 -0.1048 1.0222 29 1 -0.3633 0.9377 -0.4205 30 1 -0.3633 -0.8330 -0.6020 31 1 3.8280 3.2384 -0.7619 32 1 6.1272 1.6134 0.6198 33 1 6.2861 3.2877 -0.1369 34 1 4.5483 4.1834 1.4792 35 1 4.3888 2.5094 2.2362 36 1 5.3152 0.0911 -0.0146 37 1 4.1661 -2.1102 -0.0146 38 1 3.1054 -3.9984 2.4041 39 1 3.3619 -2.3739 1.7234 40 1 4.2051 -1.9897 5.2879 41 1 0.9338 -5.1187 1.8897 42 1 0.1130 -4.6455 0.3829 43 1 3.1149 -6.2805 1.8218 44 1 3.9431 -6.5478 0.2694 45 1 3.7988 -4.9008 0.9293 46 1 0.3356 -6.9149 -0.5721 47 1 1.9209 -7.7238 -0.6073 48 1 1.0924 -7.4567 0.9451 49 1 2.8237 -4.1897 -1.2043 50 1 2.7969 -5.8302 -1.8946 51 1 1.2923 -4.8852 -1.7868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294720970.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:06 Heat of formation + Delta-G solvation = 10.583511 kcal Electronic energy + Delta-G solvation = -30109.756509 eV Core-core repulsion = 26395.476768 eV Total energy + Delta-G solvation = -3714.279742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49951 -39.14460 -37.10507 -36.41645 -34.46274 -32.58964 -32.27483 -31.67807 -27.79517 -27.55217 -26.98726 -26.76508 -25.94505 -24.38717 -22.94290 -22.55489 -21.70604 -20.64324 -19.32298 -18.22534 -16.94199 -16.63841 -16.33895 -15.83666 -15.62864 -14.96675 -14.69204 -14.53272 -14.17773 -13.94242 -13.81861 -13.50845 -13.20966 -12.98608 -12.70391 -12.44007 -12.32628 -12.19245 -11.99800 -11.88240 -11.68568 -11.59535 -11.49147 -11.32679 -11.28056 -11.12866 -10.97425 -10.90285 -10.58933 -10.48690 -10.39691 -10.39394 -10.28823 -10.12380 -9.72587 -9.40734 -9.25170 -8.90707 -8.52791 -8.27948 -7.70067 -6.20065 -4.25401 1.27961 1.67112 3.19919 3.25954 3.29187 3.34612 3.74247 3.82255 4.19862 4.32430 4.42352 4.88849 4.98616 5.05929 5.08749 5.14294 5.14935 5.16483 5.23872 5.27541 5.34643 5.48355 5.68011 5.79137 5.83035 5.83704 5.88107 5.91256 5.93954 6.03785 6.07350 6.09844 6.14718 6.15311 6.16544 6.20121 6.27276 6.32289 6.43944 6.46353 6.47415 6.51528 6.59626 6.62335 6.74118 6.83034 7.03868 7.14356 7.49901 7.74641 8.05038 8.24376 8.37925 8.75510 8.92552 9.41332 10.86603 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.005396 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.840574 B = 5187.585559 C = 6729.704827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.179 3.821 3 N -0.485 5.485 4 C 0.169 3.831 5 C -0.105 4.105 6 C -0.174 4.174 7 C -0.162 4.162 8 C -0.180 4.180 9 C -0.027 4.027 10 C -0.154 4.154 11 C 0.569 3.431 12 O -0.561 6.561 13 N -0.582 5.582 14 C 0.225 3.775 15 C -0.533 4.533 16 H 0.059 0.941 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.129 3.871 24 C -0.084 4.084 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.132 4.132 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.043 0.957 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 0.947 -8.380 8.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.041 3.959 3 N -0.195 5.195 4 C 0.031 3.969 5 C -0.123 4.123 6 C -0.212 4.212 7 C -0.200 4.200 8 C -0.200 4.200 9 C -0.053 4.053 10 C -0.159 4.159 11 C 0.356 3.644 12 O -0.442 6.442 13 N -0.310 5.310 14 C 0.106 3.894 15 C -0.571 4.571 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.209 1.209 23 C 0.006 3.994 24 C -0.086 4.086 25 C -0.198 4.198 26 C -0.193 4.193 27 C -0.189 4.189 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.625 1.601 -8.657 8.953 hybrid contribution 0.248 -0.346 1.219 1.291 sum 1.874 1.255 -7.439 7.773 Atomic orbital electron populations 1.20897 0.88671 1.03973 1.03632 1.21109 0.96761 0.86504 0.91523 1.67172 1.09122 1.28877 1.14301 1.20280 0.89167 0.93322 0.94137 1.20727 0.96003 0.95076 1.00537 1.23082 0.91040 1.03465 1.03574 1.22972 1.02467 1.00968 0.93557 1.21699 1.01156 0.92414 1.04691 1.21518 0.92985 0.98371 0.92427 1.20614 0.94514 0.95184 1.05555 1.17931 0.81893 0.83030 0.81504 1.90653 1.35252 1.79356 1.38965 1.48101 1.46451 1.12118 1.24346 1.19784 0.89090 0.97546 0.83026 1.21497 0.94784 1.41401 0.99436 0.92246 1.24882 0.94894 0.95472 0.98363 1.69916 1.07991 1.47359 1.27563 0.86534 0.80505 0.79007 0.82069 1.19626 1.20812 1.20858 1.21401 0.95574 0.82159 1.00299 1.20958 0.96329 0.95185 0.96087 1.21970 0.96189 1.02045 0.99641 1.21781 1.00142 0.95929 1.01494 1.21825 1.01856 0.99769 0.95450 0.90299 0.90917 0.88815 0.86359 0.88111 0.88297 0.88397 0.88317 0.84746 0.84681 0.93724 0.93882 0.92685 0.90359 0.90775 0.92584 0.93616 0.91702 0.92754 0.92888 0.92668 0.93324 0.93812 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.66 36.01 0.35 -1.70 16 2 C 0.18 3.56 6.82 -82.17 -0.56 3.00 16 3 N -0.49 -9.29 10.17 -5.42 -0.06 -9.34 16 4 C 0.17 2.89 6.46 -82.51 -0.53 2.36 16 5 C -0.10 -1.42 6.21 -91.77 -0.57 -1.99 16 6 C -0.17 -1.94 9.79 -26.73 -0.26 -2.21 16 7 C -0.16 -2.06 10.23 -26.73 -0.27 -2.33 16 8 C -0.18 -2.99 9.34 -39.50 -0.37 -3.36 16 9 C -0.03 -0.49 7.69 -38.87 -0.30 -0.79 16 10 C -0.15 -3.09 4.93 -104.82 -0.52 -3.61 16 11 C 0.57 11.67 4.83 -12.33 -0.06 11.61 16 12 O -0.56 -11.94 13.21 5.32 0.07 -11.87 16 13 N -0.58 -11.74 2.00 -176.18 -0.35 -12.09 16 14 C 0.22 5.15 4.00 -5.19 -0.02 5.13 16 15 C -0.53 -13.81 9.39 -34.44 -0.32 -14.14 16 16 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -24.19 13.29 55.43 0.74 -23.45 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.13 2.29 4.61 -4.04 -0.02 2.27 16 24 C -0.08 -1.27 0.85 -154.51 -0.13 -1.40 16 25 C -0.14 -2.15 7.36 37.16 0.27 -1.88 16 26 C -0.14 -1.70 8.47 37.15 0.31 -1.39 16 27 C -0.13 -2.04 7.14 37.16 0.27 -1.77 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.72 5.97 -51.93 -0.31 1.41 16 31 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.10 1.14 6.38 -51.93 -0.33 0.81 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.13 1.84 6.23 -52.49 -0.33 1.52 16 37 H 0.14 2.30 7.55 -52.48 -0.40 1.90 16 38 H 0.04 1.05 6.03 -51.93 -0.31 0.74 16 39 H 0.04 1.03 4.50 -51.93 -0.23 0.79 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.07 1.34 7.35 -51.93 -0.38 0.95 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.11 5.93 -51.93 -0.31 0.80 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.05 0.82 6.70 -51.93 -0.35 0.48 16 50 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 51 H 0.06 1.04 7.33 -51.93 -0.38 0.66 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -28.86 398.62 -9.81 -38.68 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.37 Total: 6.71 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.83 Total: -10.52 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.33 Total: -44.88 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.07 Total: -11.87 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.86 -9.81 -38.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294720970.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.261 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds